Guide to the Human Genome
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Name: LOC100288730 Sequence: fasta or formatted (325aa) NCBI GI: 239744803
Description:

PREDICTED: hypothetical protein XP_002343287

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.5         47           4
 C cysteine            1.2          4           1
 D aspartate           2.5          8           1
 E glutamate           4.3         14           2
 F phenylalanine       0.6          2           1
 G glycine            13.5         44           4
 H histidine           4.3         14           2
 I isoleucine          1.2          4           1
 K lysine              2.5          8           1
 L leucine             6.2         20           2
 M methionine          0.9          3           1
 N asparagine          0.9          3           1
 P proline            12.0         39           3
 Q glutamine           3.1         10           1
 R arginine           12.9         42           3
 S serine              8.9         29           3
 T threonine           5.5         18           2
 V valine              4.3         14           2
 W tryptophan          0.3          1           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343287 
LOC100290367          1.000   PREDICTED: hypothetical protein XP_002347417 
LOC100292058          0.920   PREDICTED: hypothetical protein XP_002344766 
SLC4A3                0.047   solute carrier family 4, anion exchanger, member 3 ...
C10orf95              0.045   hypothetical protein LOC79946 
KDM6B                 0.039   lysine (K)-specific demethylase 6B 
FOXC1                 0.039   forkhead box C1 
CNOT3                 0.039   CCR4-NOT transcription complex, subunit 3 
SPHK2                 0.038   sphingosine kinase 2 
LOC100289721          0.036   PREDICTED: hypothetical protein XP_002347280 
EN1                   0.034   engrailed homeobox 1 
SLC4A3                0.034   solute carrier family 4, anion exchanger, member 3 ...
OTUD5                 0.034   OTU domain containing 5 isoform a 
OTUD5                 0.034   OTU domain containing 5 isoform b 
OTUD5                 0.034   OTU domain containing 5 isoform b 
FLJ34208              0.033   PREDICTED: hypothetical protein LOC401106 
FLJ34208              0.033   PREDICTED: hypothetical protein LOC401106 
FLJ34208              0.033   PREDICTED: hypothetical protein LOC401106 
NACA                  0.033   nascent polypeptide-associated complex alpha subuni...
LOC100293604          0.033   PREDICTED: hypothetical protein 
LOC100287837          0.033   PREDICTED: hypothetical protein XP_002343157 
GGN                   0.033   gametogenetin 
SCARF1                0.031   scavenger receptor class F, member 1 isoform 1 precu...
SCARF1                0.031   scavenger receptor class F, member 1 isoform 5 prec...
COL3A1                0.031   collagen type III alpha 1 preproprotein 
FLJ22184              0.031   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.031   PREDICTED: hypothetical protein LOC80164 
XIRP1                 0.031   xin actin-binding repeat containing 1 
FLJ22184              0.031   PREDICTED: hypothetical protein FLJ22184 
LOC100292370          0.030   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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