Guide to the Human Genome
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Name: LOC100293935 Sequence: fasta or formatted (195aa) NCBI GI: 239757070
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.4         28           3
 C cysteine            2.1          4           1
 D aspartate           1.5          3           1
 E glutamate           6.2         12           4
 F phenylalanine       0.5          1           1
 G glycine            16.9         33           3
 H histidine           7.2         14           3
 I isoleucine          0.0          0           0
 K lysine              1.0          2           1
 L leucine             6.2         12           1
 M methionine          2.1          4           1
 N asparagine          0.5          1           1
 P proline             9.7         19           2
 Q glutamine           5.6         11           3
 R arginine           14.9         29           2
 S serine              6.7         13           2
 T threonine           1.5          3           1
 V valine              2.1          4           1
 W tryptophan          1.0          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287289          1.000   PREDICTED: hypothetical protein 
LOC100287289          1.000   PREDICTED: hypothetical protein XP_002343656 
IRS4                  0.051   insulin receptor substrate 4 
VEGFA                 0.051   vascular endothelial growth factor A isoform f precu...
VEGFA                 0.051   vascular endothelial growth factor A isoform e precu...
VEGFA                 0.051   vascular endothelial growth factor A isoform d precu...
VEGFA                 0.051   vascular endothelial growth factor A isoform c precu...
VEGFA                 0.051   vascular endothelial growth factor A isoform b precu...
VEGFA                 0.051   vascular endothelial growth factor A isoform a precu...
VEGFA                 0.051   vascular endothelial growth factor A isoform g precu...
FLJ37078              0.044   hypothetical protein LOC222183 
POU4F1                0.044   POU domain, class 4, transcription factor 1 
LOC100129463          0.044   PREDICTED: hypothetical protein 
LOC100291593          0.044   PREDICTED: similar to hCG2012845 
LOC100129463          0.044   PREDICTED: hypothetical protein 
LOC100129463          0.044   PREDICTED: hypothetical protein 
LOC100288658          0.044   PREDICTED: hypothetical protein XP_002342750 
LOC100129463          0.044   PREDICTED: hypothetical protein 
LOC100288658          0.044   PREDICTED: hypothetical protein 
LOC100293073          0.039   PREDICTED: hypothetical protein 
HABP4                 0.039   hyaluronan binding protein 4 
PPP1R10               0.039   protein phosphatase 1, regulatory subunit 10 
LOC100293776          0.039   PREDICTED: hypothetical protein 
LOC100292845          0.039   PREDICTED: hypothetical protein 
LOC100289230          0.039   PREDICTED: hypothetical protein XP_002342600 
PRDM13                0.039   PR domain containing 13 
LOC100294439          0.036   PREDICTED: similar to Os05g0242100 
EHBP1L1               0.036   tangerin 
FLG                   0.036   filaggrin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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