Guide to the Human Genome
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Name: LOC100288706 Sequence: fasta or formatted (121aa) NCBI GI: 239744671
Description:

PREDICTED: hypothetical protein XP_002343233

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         11           3
 C cysteine            1.7          2           1
 D aspartate           1.7          2           1
 E glutamate           7.4          9           3
 F phenylalanine       0.0          0           0
 G glycine            12.4         15           2
 H histidine           0.8          1           1
 I isoleucine          0.0          0           0
 K lysine              5.8          7           2
 L leucine            13.2         16           2
 M methionine          2.5          3           1
 N asparagine          0.8          1           1
 P proline             4.1          5           1
 Q glutamine           5.0          6           1
 R arginine           15.7         19           2
 S serine             11.6         14           2
 T threonine           4.1          5           1
 V valine              1.7          2           1
 W tryptophan          2.5          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343233 
LOC100293384          1.000   PREDICTED: hypothetical protein 
LOC100289983          1.000   PREDICTED: hypothetical protein XP_002347407 
LOC730351             0.050   PREDICTED: hypothetical protein 
LOC730351             0.050   PREDICTED: hypothetical protein 
LOC730351             0.050   PREDICTED: hypothetical protein 
LOC730351             0.050   PREDICTED: hypothetical protein 
UBAP2L                0.032   ubiquitin associated protein 2-like isoform a [Homo...
UBAP2L                0.032   ubiquitin associated protein 2-like isoform b [Homo...
HFE                   0.032   hemochromatosis protein isoform 10 precursor 
RPGR                  0.032   retinitis pigmentosa GTPase regulator isoform C [Hom...
DDX50                 0.032   nucleolar protein GU2 
LOC100133599          0.028   PREDICTED: hypothetical protein 
LOC100133758          0.028   PREDICTED: hypothetical protein, partial 
FAM38A                0.028   family with sequence similarity 38, member A 
PCNT                  0.023   pericentrin 
HOXA11                0.023   homeobox A11 
CHD8                  0.023   chromodomain helicase DNA binding protein 8 
MGC87042              0.023   PREDICTED: similar to Six transmembrane epithelial ...
LOC100133599          0.023   PREDICTED: hypothetical protein 
LOC100286959          0.023   PREDICTED: hypothetical protein XP_002343921 
MGC87042              0.023   PREDICTED: hypothetical protein LOC256227 
PTPLA                 0.023   protein tyrosine phosphatase-like, member A 
LOC100293604          0.018   PREDICTED: hypothetical protein 
LOC100289721          0.018   PREDICTED: hypothetical protein XP_002347280 
LOC100287837          0.018   PREDICTED: hypothetical protein XP_002343157 
PPARGC1B              0.018   peroxisome proliferator-activated receptor gamma, co...
SRRM2                 0.018   splicing coactivator subunit SRm300 
TRH                   0.018   thyrotropin-releasing hormone 
LOC100293519          0.018   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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