RGAG4 34626

Name: RGAG4	Sequence: fasta or formatted (569aa)		NCBI GI: 66792814
Description: retrotransposon gag domain containing 4		Referenced in: NF-kappaB Pathway DNA Transposon and Retrovirus-related Sequences
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.3 36 2 C cysteine 1.1 6 1 D aspartate 5.1 29 3 E glutamate 14.9 85 7 F phenylalanine 4.4 25 2 G glycine 6.0 34 2 H histidine 1.6 9 1 I isoleucine 4.4 25 2 K lysine 4.6 26 3 L leucine 9.3 53 2 M methionine 1.9 11 1 N asparagine 3.5 20 1 P proline 10.4 59 4 Q glutamine 4.6 26 2 R arginine 7.7 44 3 S serine 5.6 32 2 T threonine 2.5 14 1 V valine 4.0 23 1 W tryptophan 0.7 4 1 Y tyrosine 1.4 8 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 retrotransposon gag domain containing 4 PEG10 0.070 paternally expressed 10 isoform RF1 PEG10 0.070 paternally expressed 10 isoform RF1/2 LDOC1L 0.055 leucine zipper, down-regulated in cancer 1-like [Hom... RTL1 0.053 retrotransposon-like 1 ZCCHC5 0.048 zinc finger, CCHC domain containing 5 BAT2D1 0.042 HBxAg transactivated protein 2 LOC100294088 0.041 PREDICTED: hypothetical protein, partial LOC651807 0.040 PREDICTED: hypothetical protein MYT1 0.040 myelin transcription factor 1 RPGR 0.040 retinitis pigmentosa GTPase regulator isoform C [Hom... LOC100133758 0.039 PREDICTED: hypothetical protein, partial NCL 0.037 nucleolin RGAG1 0.037 retrotransposon gag domain containing 1 WDR87 0.037 NYD-SP11 protein PELP1 0.037 proline, glutamic acid and leucine rich protein 1 [... TCHH 0.036 trichohyalin LOC283685 0.035 PREDICTED: golgi autoantigen, golgin subfamily a-li... MINK1 0.035 misshapen/NIK-related kinase isoform 4 MINK1 0.035 misshapen/NIK-related kinase isoform 2 MINK1 0.035 misshapen/NIK-related kinase isoform 3 MINK1 0.035 misshapen/NIK-related kinase isoform 1 DNMT1 0.034 DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo... MAP7D2 0.034 MAP7 domain containing 2 LOC645202 0.034 PREDICTED: hypothetical protein LOC645202 LOC283685 0.034 PREDICTED: golgi autoantigen, golgin subfamily a-li... LOC440243 0.034 PREDICTED: Putative golgin subfamily A member 6-lik... LDOC1 0.034 leucine zipper, down-regulated in cancer 1 DNMT1 0.033 DNA (cytosine-5-)-methyltransferase 1 isoform a [Ho... NEFM 0.033 neurofilament, medium polypeptide 150kDa isoform 1 ... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.