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Search of human proteins with 11641231
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11641231 ectodysplasin A receptor precursor [Homo sapiens]
(448 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11641231 ectodysplasin A receptor precursor [Homo sapiens] 922 0.0
gi|23238204 tumor necrosis factor receptor superfamily, member 1... 68 2e-11
gi|23238202 tumor necrosis factor receptor superfamily, member 1... 68 2e-11
gi|11140823 X-linked ectodysplasin receptor [Homo sapiens] 65 1e-10
gi|23238200 RELT tumor necrosis factor receptor precursor [Homo ... 56 6e-08
gi|21361873 RELT tumor necrosis factor receptor precursor [Homo ... 56 6e-08
gi|4507577 tumor necrosis factor receptor 2 precursor [Homo sapi... 41 0.003
gi|5730095 tumor necrosis factor receptor superfamily, member 9 ... 39 0.010
gi|23200021 tumor necrosis factor receptor superfamily, member 2... 38 0.021
gi|38569482 hypothetical protein LOC57535 [Homo sapiens] 38 0.021
gi|4507581 CD40 antigen isoform 1 precursor [Homo sapiens] 35 0.11
gi|23312371 CD40 antigen isoform 2 precursor [Homo sapiens] 35 0.11
gi|23200023 tumor necrosis factor receptor superfamily, member 2... 35 0.11
gi|4507579 tumor necrosis factor receptor superfamily, member 4 ... 35 0.14
gi|4505039 lymphotoxin beta receptor [Homo sapiens] 35 0.14
gi|134031945 SCO-spondin [Homo sapiens] 35 0.14
gi|122937440 multiple EGF-like-domains 9 [Homo sapiens] 35 0.14
gi|14790170 tumor necrosis factor receptor superfamily, member 6... 34 0.31
gi|161019170 mucin 5AC [Homo sapiens] 34 0.31
gi|4507585 tumor necrosis factor receptor superfamily, member 6b... 34 0.31
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 34 0.31
gi|4759246 tumor necrosis factor receptor superfamily, member 18... 34 0.31
gi|23238197 tumor necrosis factor receptor superfamily, member 1... 34 0.31
gi|108773804 Fraser syndrome 1 [Homo sapiens] 34 0.31
gi|100814339 coiled-coil domain containing 146 [Homo sapiens] 34 0.31
gi|4505393 nerve growth factor receptor precursor [Homo sapiens] 33 0.40
gi|29294615 sweet taste receptor T1r isoform b [Homo sapiens] 33 0.40
gi|29294619 sweet taste receptor T1r isoform c [Homo sapiens] 33 0.40
gi|89142745 tumor necrosis factor receptor superfamily, member 2... 33 0.40
gi|4507569 tumor necrosis factor receptor superfamily, member 25... 33 0.40
>gi|11641231 ectodysplasin A receptor precursor [Homo sapiens]
Length = 448
Score = 922 bits (2383), Expect = 0.0
Identities = 448/448 (100%), Positives = 448/448 (100%)
Query: 1 MAHVGDCTQTPWLPVLVVSLMCSARAEYSNCGENEYYNQTTGLCQECPPCGPGEEPYLSC 60
MAHVGDCTQTPWLPVLVVSLMCSARAEYSNCGENEYYNQTTGLCQECPPCGPGEEPYLSC
Sbjct: 1 MAHVGDCTQTPWLPVLVVSLMCSARAEYSNCGENEYYNQTTGLCQECPPCGPGEEPYLSC 60
Query: 61 GYGTKDEDYGCVPCPAEKFSKGGYQICRRHKDCEGFFRATVLTPGDMENDAECGPCLPGY 120
GYGTKDEDYGCVPCPAEKFSKGGYQICRRHKDCEGFFRATVLTPGDMENDAECGPCLPGY
Sbjct: 61 GYGTKDEDYGCVPCPAEKFSKGGYQICRRHKDCEGFFRATVLTPGDMENDAECGPCLPGY 120
Query: 121 YMLENRPRNIYGMVCYSCLLAPPNTKECVGATSGASANFPGTSGSSTLSPFQHAHKELSG 180
YMLENRPRNIYGMVCYSCLLAPPNTKECVGATSGASANFPGTSGSSTLSPFQHAHKELSG
Sbjct: 121 YMLENRPRNIYGMVCYSCLLAPPNTKECVGATSGASANFPGTSGSSTLSPFQHAHKELSG 180
Query: 181 QGHLATALIIAMSTIFIMAIAIVLIIMFYILKTKPSAPACCTSHPGKSVEAQVSKDEEKK 240
QGHLATALIIAMSTIFIMAIAIVLIIMFYILKTKPSAPACCTSHPGKSVEAQVSKDEEKK
Sbjct: 181 QGHLATALIIAMSTIFIMAIAIVLIIMFYILKTKPSAPACCTSHPGKSVEAQVSKDEEKK 240
Query: 241 EAPDNVVMFSEKDEFEKLTATPAKPTKSENDASSENEQLLSRSVDSDEEPAPDKQGSPEL 300
EAPDNVVMFSEKDEFEKLTATPAKPTKSENDASSENEQLLSRSVDSDEEPAPDKQGSPEL
Sbjct: 241 EAPDNVVMFSEKDEFEKLTATPAKPTKSENDASSENEQLLSRSVDSDEEPAPDKQGSPEL 300
Query: 301 CLLSLVHLAREKSATSNKSAGIQSRRKKILDVYANVCGVVEGLSPTELPFDCLEKTSRML 360
CLLSLVHLAREKSATSNKSAGIQSRRKKILDVYANVCGVVEGLSPTELPFDCLEKTSRML
Sbjct: 301 CLLSLVHLAREKSATSNKSAGIQSRRKKILDVYANVCGVVEGLSPTELPFDCLEKTSRML 360
Query: 361 SSTYNSEKAVVKTWRHLAESFGLKRDEIGGMTDGMQLFDRISTAGYSIPELLTKLVQIER 420
SSTYNSEKAVVKTWRHLAESFGLKRDEIGGMTDGMQLFDRISTAGYSIPELLTKLVQIER
Sbjct: 361 SSTYNSEKAVVKTWRHLAESFGLKRDEIGGMTDGMQLFDRISTAGYSIPELLTKLVQIER 420
Query: 421 LDAVESLCADILEWAGVVPPASQPHAAS 448
LDAVESLCADILEWAGVVPPASQPHAAS
Sbjct: 421 LDAVESLCADILEWAGVVPPASQPHAAS 448
>gi|23238204 tumor necrosis factor receptor superfamily, member 19
isoform 2 precursor [Homo sapiens]
Length = 417
Score = 67.8 bits (164), Expect = 2e-11
Identities = 46/135 (34%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 13 LPVLVVSLMCSARAEYSNCGENEYYNQTTGLCQECPPCGPGEEPYLSCGYGTKDEDYGCV 72
L VL+ L C E +C + E+ +++ G C C CGPG E CG+G ED CV
Sbjct: 16 LLVLLGYLSCKVTCESGDCRQQEFRDRS-GNCVPCNQCGPGMELSKECGFG-YGEDAQCV 73
Query: 73 PCPAEKFSKG-GYQICRRHKDC---EGFFRATVLTPGDMENDAECGPCLPGYYMLENRPR 128
C +F + G+Q C+ DC F +A +DA CG CLPG+Y + +
Sbjct: 74 TCRLHRFKEDWGFQKCKPCLDCAVVNRFQKANC----SATSDAICGDCLPGFYR-KTKLV 128
Query: 129 NIYGMVCYSCLLAPP 143
M C C PP
Sbjct: 129 GFQDMECVPCGDPPP 143
>gi|23238202 tumor necrosis factor receptor superfamily, member 19
isoform 1 precursor [Homo sapiens]
Length = 423
Score = 67.8 bits (164), Expect = 2e-11
Identities = 46/135 (34%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 13 LPVLVVSLMCSARAEYSNCGENEYYNQTTGLCQECPPCGPGEEPYLSCGYGTKDEDYGCV 72
L VL+ L C E +C + E+ +++ G C C CGPG E CG+G ED CV
Sbjct: 16 LLVLLGYLSCKVTCESGDCRQQEFRDRS-GNCVPCNQCGPGMELSKECGFG-YGEDAQCV 73
Query: 73 PCPAEKFSKG-GYQICRRHKDC---EGFFRATVLTPGDMENDAECGPCLPGYYMLENRPR 128
C +F + G+Q C+ DC F +A +DA CG CLPG+Y + +
Sbjct: 74 TCRLHRFKEDWGFQKCKPCLDCAVVNRFQKANC----SATSDAICGDCLPGFYR-KTKLV 128
Query: 129 NIYGMVCYSCLLAPP 143
M C C PP
Sbjct: 129 GFQDMECVPCGDPPP 143
>gi|11140823 X-linked ectodysplasin receptor [Homo sapiens]
Length = 297
Score = 65.5 bits (158), Expect = 1e-10
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 30 NCGENEYYNQTTGLCQECPPCGPGEEPYLSCGYGTKDEDYGCVPCPAEKF-SKGGYQICR 88
+C ENEY++Q G C C CGPG+E CGYG + Y C CP ++ S G+ C+
Sbjct: 2 DCQENEYWDQW-GRCVTCQRCGPGQELSKDCGYGEGGDAY-CTACPPRRYKSSWGHHRCQ 59
Query: 89 RHKDCEGFFRATVLTPGDMENDAECGPCLPGYYMLENRPRNIYGMVCYSCLLAPPNTK-E 147
C R + N A CG CLP +Y + R + C C P ++ +
Sbjct: 60 SCITCAVINRVQKVNCTATSN-AVCGDCLPRFYR-KTRIGGLQDQECIPCTKQTPTSEVQ 117
Query: 148 CVGATSGASANFP 160
C S A+ P
Sbjct: 118 CAFQLSLVEADAP 130
>gi|23238200 RELT tumor necrosis factor receptor precursor [Homo
sapiens]
Length = 430
Score = 56.2 bits (134), Expect = 6e-08
Identities = 55/190 (28%), Positives = 76/190 (40%), Gaps = 40/190 (21%)
Query: 50 CGPGEEPYLSCGYGTKDEDYGCVPCPAEKFSKG-GYQICRRHKDCEGFFRATVLTPGDME 108
C PGEEP L G GT C PCP FS G C+ H C +R G
Sbjct: 32 CPPGEEPDLDPGQGTL-----CRPCPPGTFSAAWGSSPCQPHARC-SLWRRLEAQVGMAT 85
Query: 109 NDAECGPCLPGYYMLENRPRNIYGMVCYSCLLAPPNTKEC--------------VGATSG 154
D CG C PG++ P + + C C AP T C GA+SG
Sbjct: 86 RDTLCGDCWPGWF----GPWGVPRVPCQPCSWAPLGTHGCDEWGRRARRGVEVAAGASSG 141
Query: 155 ASANFPGTSGSSTLSPFQHAHKELSGQGHLATALIIAMSTIFIMAIAIVLIIMFYILKTK 214
PG +G+ P + A A +IA+ +F + + ++ I++ +LK K
Sbjct: 142 GETRQPG-NGTRAGGPEETA----------AQYAVIAIVPVFCL-MGLLGILVCNLLKRK 189
Query: 215 PSAPACCTSH 224
CT+H
Sbjct: 190 GYH---CTAH 196
>gi|21361873 RELT tumor necrosis factor receptor precursor [Homo
sapiens]
Length = 430
Score = 56.2 bits (134), Expect = 6e-08
Identities = 55/190 (28%), Positives = 76/190 (40%), Gaps = 40/190 (21%)
Query: 50 CGPGEEPYLSCGYGTKDEDYGCVPCPAEKFSKG-GYQICRRHKDCEGFFRATVLTPGDME 108
C PGEEP L G GT C PCP FS G C+ H C +R G
Sbjct: 32 CPPGEEPDLDPGQGTL-----CRPCPPGTFSAAWGSSPCQPHARC-SLWRRLEAQVGMAT 85
Query: 109 NDAECGPCLPGYYMLENRPRNIYGMVCYSCLLAPPNTKEC--------------VGATSG 154
D CG C PG++ P + + C C AP T C GA+SG
Sbjct: 86 RDTLCGDCWPGWF----GPWGVPRVPCQPCSWAPLGTHGCDEWGRRARRGVEVAAGASSG 141
Query: 155 ASANFPGTSGSSTLSPFQHAHKELSGQGHLATALIIAMSTIFIMAIAIVLIIMFYILKTK 214
PG +G+ P + A A +IA+ +F + + ++ I++ +LK K
Sbjct: 142 GETRQPG-NGTRAGGPEETA----------AQYAVIAIVPVFCL-MGLLGILVCNLLKRK 189
Query: 215 PSAPACCTSH 224
CT+H
Sbjct: 190 GYH---CTAH 196
>gi|4507577 tumor necrosis factor receptor 2 precursor [Homo
sapiens]
Length = 461
Score = 40.8 bits (94), Expect = 0.003
Identities = 79/413 (19%), Positives = 131/413 (31%), Gaps = 114/413 (27%)
Query: 29 SNCGENEYYNQTTGLCQECPPCGPGEEPYLSCGYGTKDEDYGCVPCPAEKFS-------- 80
S C EYY+QT +C C C PG+ + C TK D C C ++
Sbjct: 38 STCRLREYYDQTAQMC--CSKCSPGQHAKVFC---TKTSDTVCDSCEDSTYTQLWNWVPE 92
Query: 81 --------------------------------------KGGYQICRRHKDCEGFFRATVL 102
+ G ++C + C F V
Sbjct: 93 CLSCGSRCSSDQVETQACTREQNRICTCRPGWYCALSKQEGCRLCAPLRKCRPGF--GVA 150
Query: 103 TPGDMENDAECGPCLPGYYMLEN------RPRNIYGMVCYS--------CLLAPPNTKEC 148
PG +D C PC PG + RP I +V C P
Sbjct: 151 RPGTETSDVVCKPCAPGTFSNTTSSTDICRPHQICNVVAIPGNASMDAVCTSTSPTRSMA 210
Query: 149 VGAT---------------SGASANFPGTSGSSTLSPFQHAHKELSGQGHLATALIIAMS 193
GA + + P TS + P A +G L LI+ ++
Sbjct: 211 PGAVHLPQPVSTRSQHTQPTPEPSTAPSTSFLLPMGPSPPAEGS-TGDFALPVGLIVGVT 269
Query: 194 TIFIMAIAIVLIIMFYILKTKPSAPACCTSHPGKSVEAQVSKDEEKKEAPDNVVMFSEKD 253
+ ++ I +V ++ +K KP C K K + P+ +
Sbjct: 270 ALGLLIIGVVNCVIMTQVKKKP----LCLQREAKVPHLPADK-ARGTQGPEQQHLL---- 320
Query: 254 EFEKLTATPAKPTKSENDASSENEQLLSRSVDSDEEPAPDKQGSPELCLLSLVHLAREKS 313
+TA + + E+ AS+ + + +R + + P + G+ E AR +
Sbjct: 321 ----ITAPSSSSSSLESSASALDRRAPTR--NQPQAPGVEASGAGE---------ARAST 365
Query: 314 ATSNKSAGIQSRRKKILDVYANVCGVVEGLSPTELPFDCLEKTSRMLSSTYNS 366
+S+ S G + NV +V S ++ C + S + T +S
Sbjct: 366 GSSDSSPGGHGTQ-------VNVTCIVNVCSSSDHSSQCSSQASSTMGDTDSS 411
>gi|5730095 tumor necrosis factor receptor superfamily, member 9
precursor [Homo sapiens]
Length = 255
Score = 38.9 bits (89), Expect = 0.010
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 54 EEPYLSCGYGT---KDEDYGCVPCPAEKFSK-GGYQICRRHKDCEGFFRATVLTPGDMEN 109
++P +C GT + + C PCP FS GG + C + C+G FR +
Sbjct: 25 QDPCSNCPAGTFCDNNRNQICSPCPPNSFSSAGGQRTCDICRQCKGVFRTR--KECSSTS 82
Query: 110 DAECGPCLPGYYML 123
+AEC C PG++ L
Sbjct: 83 NAEC-DCTPGFHCL 95
>gi|23200021 tumor necrosis factor receptor superfamily, member 25
isoform 1 precursor [Homo sapiens]
Length = 426
Score = 37.7 bits (86), Expect = 0.021
Identities = 34/125 (27%), Positives = 43/125 (34%), Gaps = 20/125 (16%)
Query: 36 YYNQTTGLCQECPPCGPGEEPYLSCGYGTKDEDYGCVP-----CPAEKFSKGGYQICRRH 90
++N CQ C + L D GC P C + C+
Sbjct: 84 HHNSECARCQACDE--QASQVALENCSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPC 141
Query: 91 KDCEGFFRATVLTPGDMENDAECGPCLPGYYMLENRPRNIYGMVCYSCLLAPPNTKECVG 150
DC R T L D +CG CLPG+Y +G C SC PP+ G
Sbjct: 142 LDCGALHRHTRLLCS--RRDTDCGTCLPGFYE--------HGDGCVSCPTPPPS---LAG 188
Query: 151 ATSGA 155
A GA
Sbjct: 189 APWGA 193
>gi|38569482 hypothetical protein LOC57535 [Homo sapiens]
Length = 1013
Score = 37.7 bits (86), Expect = 0.021
Identities = 42/184 (22%), Positives = 63/184 (34%), Gaps = 14/184 (7%)
Query: 31 CGENEYYNQTTGLCQECPPCGPGEEPYLSCGY----GTKDEDYGCVPCPAEKFSKGGYQI 86
C N Y N+ C +C P E+ SC KD Y C A ++ Y+
Sbjct: 295 CPANSYSNKGETSCHQCDPDKYSEKGSSSCNVRPACTDKDYFYTHTACDANGETQLMYK- 353
Query: 87 CRRHKDCEGFFRATVLTPGDMENDAECGPCLPGYYMLENRPRNIYGMVCYS----CLLAP 142
+ K C V P C PC PG++ N YS C P
Sbjct: 354 WAKPKICSEDLEGAVKLPASGVK-THCPPCNPGFFKTNNSTCQPCPYGSYSNGSDCTRCP 412
Query: 143 PNTKECVGATSGASANFPGTSGSSTLSPFQHAHKELSG----QGHLATALIIAMSTIFIM 198
T+ VG P ++ LS +K ++G H+ TA + + I+
Sbjct: 413 AGTEPAVGFEYKWWNTLPTNMETTVLSGINFEYKGMTGWEVAGDHIYTAAGASDNDFMIL 472
Query: 199 AIAI 202
+ +
Sbjct: 473 TLVV 476
>gi|4507581 CD40 antigen isoform 1 precursor [Homo sapiens]
Length = 277
Score = 35.4 bits (80), Expect = 0.11
Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 18/112 (16%)
Query: 31 CGENEYYNQTTGLCQECPPCGPGEEPYLSCGYGTKDEDYGCVPCPAEKF--SKGGYQICR 88
C E +Y + Q C C PG++ C T+ E C+PC +F + C
Sbjct: 26 CREKQYLINS----QCCSLCQPGQKLVSDCTEFTETE---CLPCGESEFLDTWNRETHCH 78
Query: 89 RHKDCEGFFRATVLTPGDMENDAECGPCLPGYYMLENRPRNIYGMVCYSCLL 140
+HK C+ V G E D C C G++ C SC+L
Sbjct: 79 QHKYCDPNLGLRVQQKGTSETDTIC-TCEEGWHCTSE--------ACESCVL 121
>gi|23312371 CD40 antigen isoform 2 precursor [Homo sapiens]
Length = 203
Score = 35.4 bits (80), Expect = 0.11
Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 18/112 (16%)
Query: 31 CGENEYYNQTTGLCQECPPCGPGEEPYLSCGYGTKDEDYGCVPCPAEKF--SKGGYQICR 88
C E +Y + Q C C PG++ C T+ E C+PC +F + C
Sbjct: 26 CREKQYLINS----QCCSLCQPGQKLVSDCTEFTETE---CLPCGESEFLDTWNRETHCH 78
Query: 89 RHKDCEGFFRATVLTPGDMENDAECGPCLPGYYMLENRPRNIYGMVCYSCLL 140
+HK C+ V G E D C C G++ C SC+L
Sbjct: 79 QHKYCDPNLGLRVQQKGTSETDTIC-TCEEGWHCTSE--------ACESCVL 121
>gi|23200023 tumor necrosis factor receptor superfamily, member 25
isoform 3 precursor [Homo sapiens]
Length = 380
Score = 35.4 bits (80), Expect = 0.11
Identities = 41/158 (25%), Positives = 53/158 (33%), Gaps = 29/158 (18%)
Query: 36 YYNQTTGLCQECPPCGPGEEPYLSCGYGTKDEDYGCVP-----CPAEKFSKGGYQICRRH 90
++N CQ C + L D GC P C + C+
Sbjct: 84 HHNSECARCQACDE--QASQVALENCSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPC 141
Query: 91 KDCEGFFRATVLTPGDMENDAECGPCLPGYYMLENRPRNIYGMVCYSCLLAPPNT----K 146
DC R T L D +CG CLPG+Y +G C SC P +T
Sbjct: 142 LDCGALHRHTRLLCS--RRDTDCGTCLPGFYE--------HGDGCVSC---PTSTLGSCP 188
Query: 147 ECVGATSGASANFPGTSG-----SSTLSPFQHAHKELS 179
E A G N G ++ LSP AH L+
Sbjct: 189 ERCAAVCGWRQNEAGMEALTPPPATHLSPLDSAHTLLA 226
>gi|4507579 tumor necrosis factor receptor superfamily, member 4
precursor [Homo sapiens]
Length = 277
Score = 35.0 bits (79), Expect = 0.14
Identities = 41/182 (22%), Positives = 63/182 (34%), Gaps = 30/182 (16%)
Query: 50 CGPGEEPYLSCGYGTKDED-----YGCVPCPAEKFSKGGYQICRRHKDCEGFFRATVLTP 104
C ++ C GT+ D C PCP FS G Q C+ +C + T L P
Sbjct: 99 CTATQDTVCRCRAGTQPLDSYKPGVDCAPCPPGHFSPGDNQACKPWTNCTLAGKHT-LQP 157
Query: 105 GDMENDAECGPCLPGYYMLENRPRNIYGMVCYSCLLAPPNTKECVGATSGASANFPGTSG 164
+DA C P +P+ G PP V T +P TS
Sbjct: 158 ASNSSDAICEDRDPP----ATQPQETQG---------PPARPITVQPTEA----WPRTSQ 200
Query: 165 SSTLSPFQHAHKELSGQGHLATALIIAMSTIFIMAIAIVLIIMFYILKTKPSAPACCTSH 224
+ P + G A A I+ + + + + +++ Y+L+ P
Sbjct: 201 GPSTRP-------VEVPGGRAVAAILGLGLVLGLLGPLAILLALYLLRRDQRLPPDAHKP 253
Query: 225 PG 226
PG
Sbjct: 254 PG 255
>gi|4505039 lymphotoxin beta receptor [Homo sapiens]
Length = 435
Score = 35.0 bits (79), Expect = 0.14
Identities = 61/223 (27%), Positives = 86/223 (38%), Gaps = 41/223 (18%)
Query: 7 CTQTPWLPVLVVSLMCSARAEY--SNCGENEY---YNQTTGLCQECPPCGP--GEEPYLS 59
C++ P P VS CS + + C EN Y +N T +CQ C PC P G E
Sbjct: 59 CSRCP--PGTYVSAKCSRIRDTVCATCAENSYNEHWNYLT-ICQLCRPCDPVMGLEEIAP 115
Query: 60 CGYGTKDEDYGCVP---CPAEKFSKGGYQICRRHKDCEGFFRATVLTPGDMENDAECGPC 116
C K + C P C A C DC A + N+ C PC
Sbjct: 116 CTSKRKTQ-CRCQPGMFCAAWALE---CTHCELLSDCPPGTEAELKDEVGKGNN-HCVPC 170
Query: 117 LPGYYMLENRPRNIYGMVCYSCLLAPPNTKECVGATSGASANFPGTSGSSTL--SPFQHA 174
G++ + P S P E G A PGT+ S T +P +
Sbjct: 171 KAGHFQNTSSP---------SARCQPHTRCENQGLVEAA----PGTAQSDTTCKNPLEPL 217
Query: 175 HKELSGQGHLATALIIAMSTIFIMAIAIVLIIMF-YILKTKPS 216
E+SG T L++A+ + +A ++L +F I K+ PS
Sbjct: 218 PPEMSG-----TMLMLAV--LLPLAFFLLLATVFSCIWKSHPS 253
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 35.0 bits (79), Expect = 0.14
Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 34/101 (33%)
Query: 43 LCQECPPCGPGEEPYLSCGYGTKDEDYGCVP------------------CPAEKFSKGGY 84
LCQ+ PPC PG C G ++ GC+P P ++ G
Sbjct: 4448 LCQDLPPCQPG----CYCPKGLLEQAGGCIPPEECNCWHTSAAGAGMTLAPGDRLQLGCK 4503
Query: 85 QI-CRR------HKDCEGFFRATVLTPGDMENDAECGPCLP 118
+ CRR + C+G +L + + CGPCLP
Sbjct: 4504 ECECRRGELHCTSQGCQG-----LLPLSEWSEWSPCGPCLP 4539
>gi|122937440 multiple EGF-like-domains 9 [Homo sapiens]
Length = 639
Score = 35.0 bits (79), Expect = 0.14
Identities = 47/164 (28%), Positives = 54/164 (32%), Gaps = 33/164 (20%)
Query: 22 CSARAEYSN-----CGENEYYNQTTGLCQECPPCGPGEEPYLSCGYGTKDEDYGCVPCPA 76
C R Y C E Y N T+GLCQ C C P + C K C
Sbjct: 261 CECRPGYQGLHCETCKEGFYLNYTSGLCQPC-DCSPHGALSIPCNSSGK--------CQC 311
Query: 77 EKFSKGGYQICRRHKDCEGFFRATVLTPGDMEN-----DAECGPCLPGYYMLENRPRNIY 131
+ G IC R +D F P N DA G CL N N
Sbjct: 312 KVGVIG--SICDRCQDGYYGFSKNGCLPCQCNNRSASCDALTGACL-------NCQENSK 362
Query: 132 GMVCYSC----LLAPPNTKECVGATSGASANFPGTS-GSSTLSP 170
G C C +P TKEC+ A + S SS L P
Sbjct: 363 GNHCEECKEGFYQSPDATKECLRCPCSAVTSTGSCSIKSSELEP 406
>gi|14790170 tumor necrosis factor receptor superfamily, member 6b
[Homo sapiens]
Length = 300
Score = 33.9 bits (76), Expect = 0.31
Identities = 43/168 (25%), Positives = 60/168 (35%), Gaps = 30/168 (17%)
Query: 7 CTQTPWLPVLVVSLMCSARAEYSNCGE--NEYYNQTTGLCQECPPC----GPGEEPYLSC 60
C Q P P V C R + CG +Y Q + C C G EE +C
Sbjct: 49 CAQCP--PGTFVQRPCR-RDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARAC 105
Query: 61 GYGTKDEDYGCVPCPAEKFSKGGYQICRRHKDCEGFFRATVLTPGDMENDAECGPCLPGY 120
+ T + C F+ G+ C H C A V+ PG + +C PC PG
Sbjct: 106 -HATHNR---ACRCRTGFFAHAGF--CLEHASCPP--GAGVIAPGTPSQNTQCQPCPPGT 157
Query: 121 YMLENRPRNIYGMVCYSCLLAPPNTKECVGATSGASANFPGTSGSSTL 168
+ + S P+ + C G + N PG+S TL
Sbjct: 158 FSASSS----------SSEQCQPH-RNCTAL--GLALNVPGSSSHDTL 192
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 33.9 bits (76), Expect = 0.31
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 30 NCGENEYYNQTTGLCQECPPCGPGEEPYLSCGYGTKDEDYGCVPCPAEKFSKGGYQICRR 89
NC +++ Y CQ P C E ++C D GC CPA F C
Sbjct: 1353 NCPKSQRYAYVVDACQ--PTCRGLSEADVTCSVSFVPVD-GCT-CPAGTFLNDA-GACVP 1407
Query: 90 HKDCEGFFRATVLTPGDMEND 110
++C + TVL PG++ +D
Sbjct: 1408 AQECPCYAHGTVLAPGEVVHD 1428
>gi|4507585 tumor necrosis factor receptor superfamily, member 6b
[Homo sapiens]
Length = 300
Score = 33.9 bits (76), Expect = 0.31
Identities = 43/168 (25%), Positives = 60/168 (35%), Gaps = 30/168 (17%)
Query: 7 CTQTPWLPVLVVSLMCSARAEYSNCGE--NEYYNQTTGLCQECPPC----GPGEEPYLSC 60
C Q P P V C R + CG +Y Q + C C G EE +C
Sbjct: 49 CAQCP--PGTFVQRPCR-RDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARAC 105
Query: 61 GYGTKDEDYGCVPCPAEKFSKGGYQICRRHKDCEGFFRATVLTPGDMENDAECGPCLPGY 120
+ T + C F+ G+ C H C A V+ PG + +C PC PG
Sbjct: 106 -HATHNR---ACRCRTGFFAHAGF--CLEHASCPP--GAGVIAPGTPSQNTQCQPCPPGT 157
Query: 121 YMLENRPRNIYGMVCYSCLLAPPNTKECVGATSGASANFPGTSGSSTL 168
+ + S P+ + C G + N PG+S TL
Sbjct: 158 FSASSS----------SSEQCQPH-RNCTAL--GLALNVPGSSSHDTL 192
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 33.9 bits (76), Expect = 0.31
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 30 NCGENEYYNQTTGLCQECPPCGPGEEPYLSCGYGTKDEDYGCVPCPAEKFSKGGYQICRR 89
NC +++ Y CQ P C E ++C D GC CPA F C
Sbjct: 697 NCPKSQRYAYVVDACQ--PTCRGLSEADVTCSVSFVPVD-GCT-CPAGTFLNDA-GACVP 751
Query: 90 HKDCEGFFRATVLTPGDMEND 110
++C + TVL PG++ +D
Sbjct: 752 AQECPCYAHGTVLAPGEVVHD 772
>gi|4759246 tumor necrosis factor receptor superfamily, member 18
isoform 1 precursor [Homo sapiens]
Length = 241
Score = 33.9 bits (76), Expect = 0.31
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 44 CQECP--PCGPGEEPYLSCGYGTKDEDYGCVPCPAEKFSKGGYQICRRHKDCEGFFRATV 101
C C PC PG+ G + C+ C + FS G C+ DC F TV
Sbjct: 86 CTTCRHHPCPPGQGVQ---SQGKFSFGFQCIDCASGTFSGGHEGHCKPWTDCTQFGFLTV 142
Query: 102 LTPGDMENDAECGPCLP 118
PG+ ++A C P P
Sbjct: 143 F-PGNKTHNAVCVPGSP 158
>gi|23238197 tumor necrosis factor receptor superfamily, member 18
isoform 3 precursor [Homo sapiens]
Length = 234
Score = 33.9 bits (76), Expect = 0.31
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 44 CQECP--PCGPGEEPYLSCGYGTKDEDYGCVPCPAEKFSKGGYQICRRHKDCEGFFRATV 101
C C PC PG+ G + C+ C + FS G C+ DC F TV
Sbjct: 86 CTTCRHHPCPPGQGVQ---SQGKFSFGFQCIDCASGTFSGGHEGHCKPWTDCTQFGFLTV 142
Query: 102 LTPGDMENDAECGPCLP 118
PG+ ++A C P P
Sbjct: 143 F-PGNKTHNAVCVPGSP 158
>gi|108773804 Fraser syndrome 1 [Homo sapiens]
Length = 4011
Score = 33.9 bits (76), Expect = 0.31
Identities = 35/133 (26%), Positives = 49/133 (36%), Gaps = 16/133 (12%)
Query: 29 SNCGENEYYNQ-TTGLC-QECPPCGPGEEPYLSCGYGTKDEDYGCV-PCPAEKF--SKGG 83
S+CG+ Y Q T C Q C CGP L+C T D C+ CP + + G
Sbjct: 545 SSCGKGFYNRQGTCSACDQSCDSCGPSSPRCLTCTEKTVLHDGKCMSECPGGYYADATGR 604
Query: 84 YQICRRHKDCEGF-----FRATVLTPGDMENDAECGP-CLPGYYMLENRPRNIYGMVCYS 137
++C H C T +P C P C G+Y + + C +
Sbjct: 605 CKVC--HNSCASCSGPTPSHCTACSPPKALRQGHCLPRCGEGFYSDHGVCKACHSS-CLA 661
Query: 138 CLLAPPNTKECVG 150
C+ P C G
Sbjct: 662 CM--GPAPSHCTG 672
>gi|100814339 coiled-coil domain containing 146 [Homo sapiens]
Length = 955
Score = 33.9 bits (76), Expect = 0.31
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 17/105 (16%)
Query: 227 KSVEAQVSKDEEKKEAPDNVVMFSEKDEFEKLTATPAKPTKSENDASSENEQLLSRSVDS 286
+++ Q+ K+ EK + +K E EK + K+ ND+ + E +S VD
Sbjct: 235 QTIPVQIGKEIEK--------ITRKKVEMEKKKIVLEQEVKTLNDSLKKVENKVSAIVDE 286
Query: 287 DEEPAPDKQGSPELC---------LLSLVHLAREKSATSNKSAGI 322
E + +G L L+ L+ LARE ATS GI
Sbjct: 287 KENVIKEVEGKRALLEIKEREHNQLVKLLELARENEATSLTERGI 331
>gi|4505393 nerve growth factor receptor precursor [Homo sapiens]
Length = 427
Score = 33.5 bits (75), Expect = 0.40
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 373 TWRHLAESFGLKRDEIGGMTDGM-----QLFDRISTAGYSIPELLTKLVQIERLDAVESL 427
TWRHLA G + + I T L + ++ LL L +I+R D VESL
Sbjct: 358 TWRHLAGELGYQPEHIDSFTHEACPVRALLASWATQDSATLDALLAALRRIQRADLVESL 417
Query: 428 CAD 430
C++
Sbjct: 418 CSE 420
Score = 32.3 bits (72), Expect = 0.89
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 8/99 (8%)
Query: 31 CGENEYYNQTTGLCQECPPCGPGEEPYLSCGYGTKDEDYGCVPCPAEKFSKGGYQI--CR 88
C Y ++TTG C+ C C G SC ++ C CP +S + C
Sbjct: 109 CAYGYYQDETTGRCEACRVCEAGSGLVFSC---QDKQNTVCEECPDGTYSDEANHVDPCL 165
Query: 89 RHKDCEGFFRATVLTPGDMENDAECGPCLPGYYMLENRP 127
CE R L DAEC +PG ++ + P
Sbjct: 166 PCTVCEDTERQ--LRECTRWADAECEE-IPGRWITRSTP 201
>gi|29294615 sweet taste receptor T1r isoform b [Homo sapiens]
Length = 841
Score = 33.5 bits (75), Expect = 0.40
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 44 CQECPPCGPGEEPYLSCGYGTKDEDYGCVPCPAEKFSKGGYQIC 87
C EC PCG G + K + Y C PC E+++ G Q C
Sbjct: 516 CFECVPCGAGT-------FLNKSDLYRCQPCGKEEWAPEGSQTC 552
>gi|29294619 sweet taste receptor T1r isoform c [Homo sapiens]
Length = 587
Score = 33.5 bits (75), Expect = 0.40
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 44 CQECPPCGPGEEPYLSCGYGTKDEDYGCVPCPAEKFSKGGYQIC 87
C EC PCG G + K + Y C PC E+++ G Q C
Sbjct: 262 CFECVPCGAGT-------FLNKSDLYRCQPCGKEEWAPEGSQTC 298
>gi|89142745 tumor necrosis factor receptor superfamily, member 25
isoform 12 precursor [Homo sapiens]
Length = 181
Score = 33.5 bits (75), Expect = 0.40
Identities = 28/108 (25%), Positives = 36/108 (33%), Gaps = 17/108 (15%)
Query: 36 YYNQTTGLCQECPPCGPGEEPYLSCGYGTKDEDYGCVP-----CPAEKFSKGGYQICRRH 90
++N CQ C + L D GC P C + C+
Sbjct: 84 HHNSECARCQACDE--QASQVALENCSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPC 141
Query: 91 KDCEGFFRATVLTPGDMENDAECGPCLPGYYMLENRPRNIYGMVCYSC 138
DC R T L D +CG CLPG+Y +G C SC
Sbjct: 142 LDCGALHRHTRLLCS--RRDTDCGTCLPGFYE--------HGDGCVSC 179
>gi|4507569 tumor necrosis factor receptor superfamily, member 25
isoform 2 precursor [Homo sapiens]
Length = 417
Score = 33.5 bits (75), Expect = 0.40
Identities = 28/108 (25%), Positives = 36/108 (33%), Gaps = 17/108 (15%)
Query: 36 YYNQTTGLCQECPPCGPGEEPYLSCGYGTKDEDYGCVP-----CPAEKFSKGGYQICRRH 90
++N CQ C + L D GC P C + C+
Sbjct: 84 HHNSECARCQACDE--QASQVALENCSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPC 141
Query: 91 KDCEGFFRATVLTPGDMENDAECGPCLPGYYMLENRPRNIYGMVCYSC 138
DC R T L D +CG CLPG+Y +G C SC
Sbjct: 142 LDCGALHRHTRLLCS--RRDTDCGTCLPGFYE--------HGDGCVSC 179
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,612,920
Number of Sequences: 37866
Number of extensions: 966850
Number of successful extensions: 3631
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 3478
Number of HSP's gapped (non-prelim): 264
length of query: 448
length of database: 18,247,518
effective HSP length: 106
effective length of query: 342
effective length of database: 14,233,722
effective search space: 4867932924
effective search space used: 4867932924
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.