Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239742678

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239742678 PREDICTED: hypothetical protein XP_002342581 [Homo
sapiens]
         (295 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239748653 PREDICTED: hypothetical protein [Homo sapiens]           600   e-172
gi|239742678 PREDICTED: hypothetical protein XP_002342581 [Homo ...   600   e-172
gi|239754096 PREDICTED: hypothetical protein XP_002345879 [Homo ...   593   e-170
gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo ...    39   0.007
gi|31044432 LEM domain containing 2 isoform 1 [Homo sapiens]           39   0.007
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]       38   0.009
gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]       38   0.009
gi|224465238 hypothetical protein LOC283999 [Homo sapiens]             38   0.012
gi|28875797 small protein rich in arginine and glycine [Homo sap...    37   0.016
gi|112821681 G protein-regulated inducer of neurite outgrowth 1 ...    37   0.016
gi|167614500 lymphocyte-activation protein 3 precursor [Homo sap...    36   0.035
gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo ...    36   0.046
gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo ...    36   0.046
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]       35   0.060
gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo ...    34   0.13 
gi|169208488 PREDICTED: hypothetical protein [Homo sapiens]            34   0.13 
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]               34   0.13 
gi|239756701 PREDICTED: similar to hCG1986016 [Homo sapiens]           34   0.18 
gi|239749209 PREDICTED: hypothetical protein XP_002346954 [Homo ...    34   0.18 
gi|239747203 PREDICTED: hypothetical protein LOC643965 [Homo sap...    34   0.18 
gi|239741003 PREDICTED: hypothetical protein LOC643965 [Homo sap...    34   0.18 
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      33   0.23 
gi|124378039 SEC16 homolog A [Homo sapiens]                            33   0.23 
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]            33   0.23 
gi|33667117 MICAL-like 2 isoform 1 [Homo sapiens]                      33   0.23 
gi|6912446 potassium voltage-gated channel, subfamily H, member ...    33   0.30 
gi|239756566 PREDICTED: hypothetical protein [Homo sapiens]            33   0.30 
gi|20336196 A-kinase anchor protein 7 isoform beta [Homo sapiens]      33   0.30 
gi|51242137 transmembrane protein 200B [Homo sapiens]                  33   0.30 
gi|223278356 glutamate receptor, ionotropic, N-methyl-D-aspartat...    33   0.39 

>gi|239748653 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 295

 Score =  600 bits (1547), Expect = e-172
 Identities = 295/295 (100%), Positives = 295/295 (100%)

Query: 1   MAKVVPDGVQLVLKEADALVQVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKR 60
           MAKVVPDGVQLVLKEADALVQVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKR
Sbjct: 1   MAKVVPDGVQLVLKEADALVQVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKR 60

Query: 61  RREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIREPKTSPEALRLRLAGLKASPSF 120
           RREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIREPKTSPEALRLRLAGLKASPSF
Sbjct: 61  RREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIREPKTSPEALRLRLAGLKASPSF 120

Query: 121 KDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDS 180
           KDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDS
Sbjct: 121 KDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDS 180

Query: 181 GPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQ 240
           GPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQ
Sbjct: 181 GPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQ 240

Query: 241 RGGLPVQWSRGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHVVPV 295
           RGGLPVQWSRGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHVVPV
Sbjct: 241 RGGLPVQWSRGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHVVPV 295


>gi|239742678 PREDICTED: hypothetical protein XP_002342581 [Homo
           sapiens]
          Length = 295

 Score =  600 bits (1547), Expect = e-172
 Identities = 295/295 (100%), Positives = 295/295 (100%)

Query: 1   MAKVVPDGVQLVLKEADALVQVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKR 60
           MAKVVPDGVQLVLKEADALVQVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKR
Sbjct: 1   MAKVVPDGVQLVLKEADALVQVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKR 60

Query: 61  RREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIREPKTSPEALRLRLAGLKASPSF 120
           RREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIREPKTSPEALRLRLAGLKASPSF
Sbjct: 61  RREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIREPKTSPEALRLRLAGLKASPSF 120

Query: 121 KDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDS 180
           KDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDS
Sbjct: 121 KDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDS 180

Query: 181 GPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQ 240
           GPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQ
Sbjct: 181 GPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQ 240

Query: 241 RGGLPVQWSRGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHVVPV 295
           RGGLPVQWSRGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHVVPV
Sbjct: 241 RGGLPVQWSRGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHVVPV 295


>gi|239754096 PREDICTED: hypothetical protein XP_002345879 [Homo
           sapiens]
          Length = 297

 Score =  593 bits (1530), Expect = e-170
 Identities = 294/297 (98%), Positives = 295/297 (99%), Gaps = 2/297 (0%)

Query: 1   MAKVVPDGVQLVLKEADALVQVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKR 60
           MAKVVPDGVQLVLKEADALVQVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKR
Sbjct: 1   MAKVVPDGVQLVLKEADALVQVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKR 60

Query: 61  RREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIR--EPKTSPEALRLRLAGLKASP 118
           RREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIR  EPKTSPEALRLRLAGLKASP
Sbjct: 61  RREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIRVAEPKTSPEALRLRLAGLKASP 120

Query: 119 SFKDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRW 178
           SFKDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRW
Sbjct: 121 SFKDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRW 180

Query: 179 DSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRV 238
           DSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRV
Sbjct: 181 DSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRV 240

Query: 239 QQRGGLPVQWSRGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHVVPV 295
           QQRGGLPVQWS+GPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHVVPV
Sbjct: 241 QQRGGLPVQWSQGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHVVPV 297


>gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo
           sapiens]
          Length = 944

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 66/234 (28%), Positives = 81/234 (34%), Gaps = 57/234 (24%)

Query: 65  GEGAAAPGMVPAGDSRPLT-----------ALLACNLNPFYLLIREPKTSPEALRLRLAG 113
           GE A A G  P     PL            A LA  + P   ++ +    P      L G
Sbjct: 455 GEAALATGEGPQARVHPLVDGQQGGALEGLAALATLVGPLARVVPQVVAQPGGA---LEG 511

Query: 114 LKASPSFKDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARR-----------LPLPAR 162
           L A  +F  P  R               +  G  WR   G RR           L L  R
Sbjct: 512 LAALGTFVGPLRR---------------SGGGRGWRRDGGGRRQRFLGAGHLRSLSLRGR 556

Query: 163 VAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVGG-----PR 217
              RG   V+    R ++G    G   A   A   RLP  SP+  L    V G     P 
Sbjct: 557 APGRGLFHVALL-MRQEAGQLREGAVAA---AAAERLPAGSPVAVL----VAGEPSHRPE 608

Query: 218 GRRAGRLGSLRRGLRLGRQRVQQRGGLPVQWSRGPRDLCWLRPTAGCNRGPGPR 271
           G  AG+ G  RRG   GR+ ++QRG    +W  G   L       G   GPG R
Sbjct: 609 GLAAGQTGKARRGGGGGRRGLRQRG----RWLVGLGRLGGCLLGLGRRIGPGAR 658



 Score = 29.6 bits (65), Expect = 3.3
 Identities = 46/167 (27%), Positives = 60/167 (35%), Gaps = 31/167 (18%)

Query: 141 GTPAGSSWRGSPGARRLPLPA------RVAERGGARVSRRGPRWDSGPQTGGQAHAELLA 194
           G+P      G P  R   L A      R    GG R  R+  RW  G    G+    LL 
Sbjct: 592 GSPVAVLVAGEPSHRPEGLAAGQTGKARRGGGGGRRGLRQRGRWLVGL---GRLGGCLLG 648

Query: 195 LERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQ-------QRGG---- 243
           L RR+   + L   + L            +  L RGLR  ++ ++       +RGG    
Sbjct: 649 LGRRIGPGARLVLQEQLLAAESLLAAIAAVHQLHRGLRRRQKELRHHGRGRGRRGGRRGR 708

Query: 244 -----LPVQWSRGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARA 285
                +P+Q      DL  L    G  RG G RG      G G  RA
Sbjct: 709 AVGLEVPLQVGVAHEDLAGLPGLGGRGRGGGTRG------GGGAVRA 749


>gi|31044432 LEM domain containing 2 isoform 1 [Homo sapiens]
          Length = 503

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 44/148 (29%), Positives = 59/148 (39%), Gaps = 22/148 (14%)

Query: 105 EALRLRL-AGLKASPSFKDPESRFMEPWAPLPL---------LVGEGTPAGSSWRGSPGA 154
           E  RLR  A L+A P+   P +   EPW   P            G+  P+ +SW GS G 
Sbjct: 64  EEARLREDAPLRARPAAASPRA---EPWLSQPASGSAYATPGAYGDIRPSAASWVGSRGL 120

Query: 155 RRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVG 214
                PA++  R   R S      D   +T  +A        RR    SP  A  P ++ 
Sbjct: 121 AYPARPAQLRRRASVRGSSEE---DEDARTPDRATQGPGLAARRWWAASPAPARLPSSLL 177

Query: 215 GP------RGRRAGRLGSLRRGLRLGRQ 236
           GP      R  RAG  G+ R    +GR+
Sbjct: 178 GPDPRPGLRATRAGPAGAARARPEVGRR 205


>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
          Length = 654

 Score = 38.1 bits (87), Expect = 0.009
 Identities = 41/125 (32%), Positives = 49/125 (39%), Gaps = 25/125 (20%)

Query: 111 LAGLKASPSFKDPESRFMEPWAP-LPLLVGE---GTPAGSSWRGSPGARRLPLPARVAER 166
           L G+K  P F  P+    EP  P LP   GE     P G   RG PGA   P P      
Sbjct: 336 LPGIKGEPGFIGPQG---EPGLPGLPGTKGERGEAGPPGRGERGEPGA---PGPKGKQGE 389

Query: 167 GGARVSR-----RGPRWDSGP--------QTGGQAHAELLALERRLPEHSPLRALKPLAV 213
            G R  +     RG + DSG         Q G Q   E++     L  H  L+ +  L V
Sbjct: 390 SGTRGPKGSKGDRGEKGDSGAQGPRGPPGQKGDQGATEIIDYNGNL--HEALQRITTLTV 447

Query: 214 GGPRG 218
            GP G
Sbjct: 448 TGPPG 452



 Score = 28.5 bits (62), Expect = 7.4
 Identities = 37/152 (24%), Positives = 58/152 (38%), Gaps = 14/152 (9%)

Query: 141 GTPAGSSWRGSPGARR-LPLPARVAERGGARV-------SRRGPRWDSGPQTGGQAHAEL 192
           G P     +G  G++  +  P    E+GG  +         +G + DSG    G     +
Sbjct: 470 GIPGMDGEQGLKGSKGDMGDPGMTGEKGGIGLPGLPGANGMKGEKGDSGMP--GPQGPSI 527

Query: 193 LALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQRGGLPVQWSRGP 252
           +        H P   + P  + GP+G   G +G    G    +    ++G +     RGP
Sbjct: 528 IGPPGPPGPHGPPGPMGPHGLPGPKGTD-GPMGP--HGPAGPKGERGEKGAMGEPGPRGP 584

Query: 253 RDLCWLRPTAGCNRGPGPRGCAKGSVGRGGAR 284
             L       G +  PGPRG  KG +G  G +
Sbjct: 585 YGLPGKDGEPGLDGFPGPRG-EKGDLGEKGEK 615


>gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]
          Length = 642

 Score = 38.1 bits (87), Expect = 0.009
 Identities = 41/125 (32%), Positives = 49/125 (39%), Gaps = 25/125 (20%)

Query: 111 LAGLKASPSFKDPESRFMEPWAP-LPLLVGE---GTPAGSSWRGSPGARRLPLPARVAER 166
           L G+K  P F  P+    EP  P LP   GE     P G   RG PGA   P P      
Sbjct: 336 LPGIKGEPGFIGPQG---EPGLPGLPGTKGERGEAGPPGRGERGEPGA---PGPKGKQGE 389

Query: 167 GGARVSR-----RGPRWDSGP--------QTGGQAHAELLALERRLPEHSPLRALKPLAV 213
            G R  +     RG + DSG         Q G Q   E++     L  H  L+ +  L V
Sbjct: 390 SGTRGPKGSKGDRGEKGDSGAQGPRGPPGQKGDQGATEIIDYNGNL--HEALQRITTLTV 447

Query: 214 GGPRG 218
            GP G
Sbjct: 448 TGPPG 452



 Score = 31.2 bits (69), Expect = 1.1
 Identities = 39/160 (24%), Positives = 60/160 (37%), Gaps = 14/160 (8%)

Query: 141 GTPAGSSWRGSPGARR-LPLPARVAERGGARV-------SRRGPRWDSGPQTGGQAHAEL 192
           G P     +G  G++  +  P    E+GG  +         +G + DSG    G     +
Sbjct: 470 GIPGMDGEQGLKGSKGDMGDPGMTGEKGGIGLPGLPGANGMKGEKGDSGMP--GPQGPSI 527

Query: 193 LALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQRGGLPVQWSRGP 252
           +        H P   + P  + GP+G   G +G    G    +    ++G +     RGP
Sbjct: 528 IGPPGPPGPHGPPGPMGPHGLPGPKGTD-GPMGP--HGPAGPKGERGEKGAMGEPGPRGP 584

Query: 253 RDLCWLRPTAGCNRGPGPRGCAKGSVGRGGARAAPNHTHV 292
             L       G +  PGPRG  KG +G  G +      HV
Sbjct: 585 YGLPGKDGEPGLDGFPGPRG-EKGDLGEKGEKVTSPSQHV 623


>gi|224465238 hypothetical protein LOC283999 [Homo sapiens]
          Length = 394

 Score = 37.7 bits (86), Expect = 0.012
 Identities = 48/162 (29%), Positives = 61/162 (37%), Gaps = 25/162 (15%)

Query: 143 PAGSSWRGSPGARRLPLPARVAERGGARVSRR--GP------RWDSGPQTGGQAHAELLA 194
           P+ S    SP AR++ L   +  RG   +  R  GP      RWD  P       A  L+
Sbjct: 49  PSSSQALHSP-ARQVHLVWLLRSRGFREIKERAQGPGASPWGRWDWSPSP---RFAARLS 104

Query: 195 LERRLPEHSPLRALK-----PLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQRGGLPVQWS 249
                P+    R  +     P   GGPRG+ AGR G + R  R GR+R +      +   
Sbjct: 105 TSSPFPQGRAQRPQRGGVDLPATPGGPRGQCAGRSGDVLR--RAGRRRARPPPVPRLPAP 162

Query: 250 RGPRDLCWLRPTAGCNRGPG-PRGCAKGSVGRGGARAAPNHT 290
           R PR     RP       P  P G   G  GR      P  T
Sbjct: 163 RAPR-----RPRGPATPDPSPPAGRPHGPAGRAAPGRRPGCT 199



 Score = 31.2 bits (69), Expect = 1.1
 Identities = 54/199 (27%), Positives = 67/199 (33%), Gaps = 61/199 (30%)

Query: 97  IREPKTSPEAL-----RLRLAGLKASPSFKDPESRFMEP---------WAPLP-----LL 137
           + +P +S +AL     ++ L  L  S  F++ + R   P         W+P P     L 
Sbjct: 45  LADPPSSSQALHSPARQVHLVWLLRSRGFREIKERAQGPGASPWGRWDWSPSPRFAARLS 104

Query: 138 VGEGTPAGSSWRGSPGARRLPLP------------ARVAERGGARVSR----------RG 175
                P G + R   G   LP                V  R G R +R          R 
Sbjct: 105 TSSPFPQGRAQRPQRGGVDLPATPGGPRGQCAGRSGDVLRRAGRRRARPPPVPRLPAPRA 164

Query: 176 PRWDSGPQTGGQAHAELLALERRLPEHSPL--RALKPLAVGGPRGRRAGRLGSLRRGLRL 233
           PR   GP T               P+ SP   R   P     P GRR G    LR   R 
Sbjct: 165 PRRPRGPAT---------------PDPSPPAGRPHGPAGRAAP-GRRPGCTAQLRAPGRR 208

Query: 234 GRQR--VQQRGGLPVQWSR 250
           GRQR  V   GG   QW R
Sbjct: 209 GRQRLLVHPGGGGRRQWQR 227


>gi|28875797 small protein rich in arginine and glycine [Homo
           sapiens]
          Length = 248

 Score = 37.4 bits (85), Expect = 0.016
 Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 9/87 (10%)

Query: 204 PLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQ-RVQQRGGLPVQWSRGPRDLCWLRPTA 262
           P+ AL   A+GG RG    + G  R GLR GR  R   RGG+ ++     R    + P  
Sbjct: 91  PIGALARGAIGG-RGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQNLLRGGRAVAPRM 149

Query: 263 GCNRG-------PGPRGCAKGSVGRGG 282
           G  RG       PG  G  +G++GRGG
Sbjct: 150 GLRRGGVRGRGGPGRGGLGRGAMGRGG 176



 Score = 36.2 bits (82), Expect = 0.035
 Identities = 40/117 (34%), Positives = 49/117 (41%), Gaps = 21/117 (17%)

Query: 141 GTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLP 200
           G P G+  RG+ G R LP+  R   RGG R              GG+A   LL     L 
Sbjct: 89  GRPIGALARGAIGGRGLPIIQRGLPRGGLR--------------GGRATRTLLRGGMSLR 134

Query: 201 EHSPL---RALKP---LAVGGPRGRRAGRLGSLRRGLRLGRQRVQQRGGLPVQWSRG 251
             + L   RA+ P   L  GG RGR     G L RG  +GR  +  RG   +   RG
Sbjct: 135 GQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRG-AMGRGGIGGRGRGMIGRGRG 190


>gi|112821681 G protein-regulated inducer of neurite outgrowth 1
           [Homo sapiens]
          Length = 1008

 Score = 37.4 bits (85), Expect = 0.016
 Identities = 48/185 (25%), Positives = 66/185 (35%), Gaps = 20/185 (10%)

Query: 21  QVALLGQDGGLARQQGAIDAQLLHRSRSRCSREALSRRKRRREP-GEGAAAPGMVPAGDS 79
           +  L GQ+G  A   G   A  L +   + S +      R+ EP   G   P  +   DS
Sbjct: 639 ETKLPGQEGAAA--PGEAGAVCLKKETPQASEKVDPGSCRKAEPLASGKGEPVSLGKADS 696

Query: 80  RPLTALLACNLN---PFYLLIREPKTSPEALRLRLAGLKASPSFKDPESRFMEPWAPLPL 136
            P     + +L    P  L   +P +S   L  +  G   SP         +EP A  P+
Sbjct: 697 APSRKTESPSLGKVVPLSLEKTKPSSSSRQLDRKALGSARSPEGARGSEGRVEPKAE-PV 755

Query: 137 LVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVS---RRGPRW----------DSGPQ 183
              E +  G     + GA R P P   A   G R      + P W          D+G Q
Sbjct: 756 SSTEASSLGQKDLEAAGAERSPCPEAAAPPPGPRTRDNFTKAPSWEASAPPPPREDAGTQ 815

Query: 184 TGGQA 188
            G QA
Sbjct: 816 AGAQA 820


>gi|167614500 lymphocyte-activation protein 3 precursor [Homo
           sapiens]
          Length = 525

 Score = 36.2 bits (82), Expect = 0.035
 Identities = 43/146 (29%), Positives = 58/146 (39%), Gaps = 16/146 (10%)

Query: 127 FMEP-W-APL-PLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQ 183
           F++P W AP+ PL  G   P   +  G+P   +LP    +  +  + + R G  W   P 
Sbjct: 11  FLQPLWVAPVKPLQPGAEVPVVWAQEGAPA--QLPCSPTIPLQDLSLLRRAGVTWQHQPD 68

Query: 184 TGGQAHAELLALERRLPEHSPLRALKPLAVG--GPRGRRAGRLGSLRRGLRLGRQRVQQR 241
           +G  A A         P H       P A    GPR RR   L     GLR GR  +Q R
Sbjct: 69  SGPPAAA---------PGHPLAPGPHPAAPSSWGPRPRRYTVLSVGPGGLRSGRLPLQPR 119

Query: 242 GGLPVQWSRGPRDLCWLRPTAGCNRG 267
             L  +  +      WLRP    + G
Sbjct: 120 VQLDERGRQRGDFSLWLRPARRADAG 145


>gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo
           sapiens]
          Length = 459

 Score = 35.8 bits (81), Expect = 0.046
 Identities = 62/217 (28%), Positives = 80/217 (36%), Gaps = 31/217 (14%)

Query: 55  LSRRKRRREPGEGAAAPGMVPAGD-SRPLTALLACNLNPFYLLIREPKTSPEALRLRLAG 113
           L  R R+RE G G+AAP +  +GD +  L    A    P  +L  EP+        RL  
Sbjct: 232 LLSRTRQRELG-GSAAPSVAFSGDVTLSLERGPASAKPPPQVLTAEPREDATPGEGRLPD 290

Query: 114 LKASPSFKDPESRFMEPWAP-------LPLLVGEGTPAGSSWRGSPGARRLP------LP 160
            +  P    P  R   P AP       L   VG G     SWR   G+  LP      L 
Sbjct: 291 FEKQPH--SPRERLDPPPAPFGQMILILGFRVGRGGTGSWSWRRGAGSAELPGCSCAQLA 348

Query: 161 ARVAERGGARVSR---RGPRWDSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPR 217
            ++A  G +  SR    G R     + GG   A       R      L+ L         
Sbjct: 349 QQLARAGKSTESRNRLNGRRGGVEARGGGGGVA-------RAERDDVLQGLGLRGTEDWC 401

Query: 218 GRRAGRLGS-LRRGLR---LGRQRVQQRGGLPVQWSR 250
            RRA R  S +RRG      G     +R  +PV  +R
Sbjct: 402 ARRAPRTSSGVRRGAAPGFRGSSNTARRRSIPVSLNR 438


>gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo
           sapiens]
          Length = 459

 Score = 35.8 bits (81), Expect = 0.046
 Identities = 62/217 (28%), Positives = 80/217 (36%), Gaps = 31/217 (14%)

Query: 55  LSRRKRRREPGEGAAAPGMVPAGD-SRPLTALLACNLNPFYLLIREPKTSPEALRLRLAG 113
           L  R R+RE G G+AAP +  +GD +  L    A    P  +L  EP+        RL  
Sbjct: 232 LLSRTRQRELG-GSAAPSVAFSGDVTLSLERGPASAKPPPQVLTAEPREDATPGEGRLPD 290

Query: 114 LKASPSFKDPESRFMEPWAP-------LPLLVGEGTPAGSSWRGSPGARRLP------LP 160
            +  P    P  R   P AP       L   VG G     SWR   G+  LP      L 
Sbjct: 291 FEKQPH--SPRERLDPPPAPFGQMILILGFRVGRGGTGSWSWRRGAGSAELPGCSCAQLA 348

Query: 161 ARVAERGGARVSR---RGPRWDSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPR 217
            ++A  G +  SR    G R     + GG   A       R      L+ L         
Sbjct: 349 QQLARAGKSTESRNRLNGRRGGVEARGGGGGVA-------RAERDDVLQGLGLRGTEDWC 401

Query: 218 GRRAGRLGS-LRRGLR---LGRQRVQQRGGLPVQWSR 250
            RRA R  S +RRG      G     +R  +PV  +R
Sbjct: 402 ARRAPRTSSGVRRGAAPGFRGSSNTARRRSIPVSLNR 438


>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
          Length = 1499

 Score = 35.4 bits (80), Expect = 0.060
 Identities = 44/149 (29%), Positives = 56/149 (37%), Gaps = 31/149 (20%)

Query: 141 GTPAGSSWRGSPGARRLP----LPARVAERGGARVSRRGPRWDSG-PQTGGQAHAELLAL 195
           G P    + GSPGAR  P    LP     RG       GP+ + G P + G+A       
Sbjct: 273 GNPGEVGFAGSPGARGFPGAPGLPGLKGHRG--HKGLEGPKGEVGAPGSKGEAGPT---- 326

Query: 196 ERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQRGGLPVQWSRGPRDL 255
                   P+ A+ PL   G  G R GRLG         +    QRG   +    GP   
Sbjct: 327 -------GPMGAMGPLGPRGMPGER-GRLGP--------QGAPGQRGAHGMPGKPGPMGP 370

Query: 256 CWLRPTAGCNRGPGPRGCAKGSVGRGGAR 284
             +  ++G    PG     KG  G  GAR
Sbjct: 371 LGIPGSSGFPGNPG----MKGEAGPTGAR 395



 Score = 30.4 bits (67), Expect = 1.9
 Identities = 52/196 (26%), Positives = 68/196 (34%), Gaps = 43/196 (21%)

Query: 113 GLKASPSFKDPESRFMEPWAPLPLLVGE----GTPAGSSWRGSPGARRLPLPARVAERGG 168
           GL  +P  + PE +     AP     GE    G P     RG PG+  LP          
Sbjct: 573 GLTGNPGVQGPEGKLGPLGAP-----GEDGRPGPPGSIGIRGQPGSMGLP---------- 617

Query: 169 ARVSRRGPRWDSG-PQTGGQAHAELLALERRLP----EHSPLRALKPLAVGGPRGRRA-- 221
                 GP+  SG P   G+A    +  +R  P    E  P   + P  + G RG +   
Sbjct: 618 ------GPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPP 671

Query: 222 ---------GRLGSLRRGLRLGRQRVQ-QRGGLPVQWSRGPRDLCWLRPTAGCNRGPGPR 271
                    G  G    G + G Q V    G +     RG R     R   G    PG +
Sbjct: 672 GPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEK 731

Query: 272 GCAKGSVGRGGARAAP 287
           G A G  G  G + +P
Sbjct: 732 GMA-GGHGPDGPKGSP 746



 Score = 28.1 bits (61), Expect = 9.6
 Identities = 46/164 (28%), Positives = 59/164 (35%), Gaps = 40/164 (24%)

Query: 130  PWAPLPLLVGEGTPAGSSWRGSPGAR-RLPLPARVAERGGARVSRRGPRWDSGPQTGGQA 188
            P  P P+    G P  +  RG PG+R  +  P R  +RG      +GPR D G   G + 
Sbjct: 1085 PGTPGPV----GAPGDAGQRGDPGSRGPIGPPGRAGKRG--LPGPQGPRGDKGDH-GDRG 1137

Query: 189  HAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQRGGLPVQW 248
                   +R    H     L+ L   GP G   G  GS                G+P  +
Sbjct: 1138 -------DRGQKGHRGFTGLQGLP--GPPGPN-GEQGS---------------AGIPGPF 1172

Query: 249  SRGPRDLCWLRPTAGCNRGPGPRG-----CAKGSVGRGGARAAP 287
              GPR        +G    PGP G       +GSVG  G    P
Sbjct: 1173 --GPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPP 1214


>gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo
           sapiens]
          Length = 697

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 43/153 (28%), Positives = 56/153 (36%), Gaps = 25/153 (16%)

Query: 113 GLKASPSFKDPESRFMEPWA-----PLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERG 167
           G+K S    D  +  +  +A       P+  G        W    G RR     +V +  
Sbjct: 452 GVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQVVQGL 511

Query: 168 GARVSRRGPRWDSGPQTGGQAHA--ELLALERR--------------LPEHSPLRALKPL 211
                RRGP+  +G Q G QA A     AL R               +      RA KP+
Sbjct: 512 RGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLGGAVGARGRRRAHKPV 571

Query: 212 AVGGPRGRRAGRLGSLRRGLRLGRQRVQQRGGL 244
            VG     R  R+G+ RR    G  RV QRG L
Sbjct: 572 VVGERLRGRGARVGTWRR----GGGRVAQRGQL 600



 Score = 28.1 bits (61), Expect = 9.6
 Identities = 13/26 (50%), Positives = 14/26 (53%)

Query: 56  SRRKRRREPGEGAAAPGMVPAGDSRP 81
           SR+K  R PG  A  PG  PAG   P
Sbjct: 188 SRKKSFRAPGSPACGPGRRPAGTPMP 213


>gi|169208488 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 150

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 34/106 (32%), Positives = 42/106 (39%), Gaps = 9/106 (8%)

Query: 144 AGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLPEHS 203
           AGS  R     R +P   + A R GAR +R  P       +G     E  A   RL    
Sbjct: 10  AGSHLRAQRLGREVPAAPKPAPRQGARETRPPPPPTQASHSGAGQTREKGARSPRLGNRG 69

Query: 204 PLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQRGGLPVQWS 249
             RA      G P  R +GRL S    L L R+    R  + +QWS
Sbjct: 70  LSRA------GSPLSRDSGRLLS---ALALPREAATGRLTVMLQWS 106


>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
          Length = 1860

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 50/170 (29%), Positives = 63/170 (37%), Gaps = 40/170 (23%)

Query: 113  GLKASPSFKDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVS 172
            G+   P    P+     P  P     G GTP     +G PG+R  P       RG     
Sbjct: 1015 GMMGPPGVPGPKGSMGHPGMP----GGMGTPGEPGPQGPPGSRGPP-----GMRGAK--G 1063

Query: 173  RRGPRWDSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLR 232
            RRGPR   GP  G Q                  R LK     GP+G R GR G  ++G+ 
Sbjct: 1064 RRGPRGPDGP-AGEQGS----------------RGLK--GPPGPQG-RPGRPG--QQGVA 1101

Query: 233  LGRQRVQQRGGLPVQWSRGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGG 282
              R  +  RG   +    GP        T G    PGP+G  +G +G  G
Sbjct: 1102 GERGHLGSRGFPGIPGPSGPPG------TKGLPGEPGPQG-PQGPIGPPG 1144


>gi|239756701 PREDICTED: similar to hCG1986016 [Homo sapiens]
          Length = 325

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 79/285 (27%), Positives = 104/285 (36%), Gaps = 68/285 (23%)

Query: 26  GQDGGLARQQGAIDAQ-------LLH---RSRSRCSREAL------SRRKRRREPGEGAA 69
           G+ GGL+ Q G +  Q        LH   R+  R  R  +      ++R  ++E    A 
Sbjct: 65  GEAGGLSDQPGVMRTQGRTVGVAALHARFRASQRAGRHPVEAELGPAQRAVQQEQRARAR 124

Query: 70  APGMVPAGDSRPLTALLACNLNPFYLLIREPKTSPEALRLRLAGLKASPSFKDPESRFME 129
           APG VP G  R    LL  +  P  L  R  +  P  LR+R       PS +        
Sbjct: 125 APGRVPGGRPR----LLQQSRPP--LPRRHGRQRPVVLRVR----AVHPSLQ-------- 166

Query: 130 PWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQA- 188
                   +GEG P+G    G+ G+  L       E   +R  RR P    G QTG +  
Sbjct: 167 -----VCHLGEGLPSGEGEDGAEGSHSLD------ECPPSRQVRRQPHIPFGFQTGVEPP 215

Query: 189 -HAELLALERRLPEHSPLRALKPLAVGGPRGRRAGRL-------GSLRRGLRLGRQRVQQ 240
            HA       + P  +  R L PL     RG +  RL       G  R G          
Sbjct: 216 HHA------AQHPPRAQTRRLFPL-----RGLQGSRLLPDLLPTGEGRPGEDPPFAGPSA 264

Query: 241 RGGLPVQWS--RGPRDLCWLRPTAGCNRGPGPRGCAKGSVGRGGA 283
              +P+ WS    PR +  L    G  R P   G   GS  R GA
Sbjct: 265 WLHVPLFWSLLERPRPILRLAYLEG-RRFPWNAGLRPGSAARAGA 308


>gi|239749209 PREDICTED: hypothetical protein XP_002346954 [Homo
           sapiens]
          Length = 262

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 44/136 (32%), Positives = 50/136 (36%), Gaps = 37/136 (27%)

Query: 149 RGSPG--ARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLPEHSPLR 206
           RG+ G  ARRL LP      GG   S R P W+SG               RR P      
Sbjct: 120 RGACGNTARRL-LPG-----GGRLRSPRDPAWESG---------------RRRPASGVRV 158

Query: 207 ALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQRG------GLPVQWSR----GPRDLC 256
               L V GPRG R  +LG        G +  Q R           +W +    GPR L 
Sbjct: 159 ESGVLPVPGPRGSRLSKLGGPHARSPHGNRVPQARSPALRSLETAARWRKKQPLGPRRLG 218

Query: 257 WLRPTAGCNRGPGPRG 272
           W  P    N  PG RG
Sbjct: 219 WATP----NPLPGHRG 230


>gi|239747203 PREDICTED: hypothetical protein LOC643965 [Homo
           sapiens]
          Length = 451

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 49/155 (31%), Positives = 59/155 (38%), Gaps = 25/155 (16%)

Query: 149 RGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLPEHSPLRAL 208
           R  PG    P PAR  E      ++R P   SG    G       A++ R      L+  
Sbjct: 114 RAIPGVH--PRPARQEE------AQRRPAPRSGSHEQG-------AVQARAAGRQQLQHR 158

Query: 209 KPLAVGGP-RGRRAGRLGSLR-RGLRLGRQRVQQRGGLPVQWSRGPRDLCWLRPTAGCNR 266
           +P A G P R R A R+  LR RG R  R   Q RG   V    GP      RP A   R
Sbjct: 159 QPPARGRPVRRRPAARVLRLRCRGSR-ARSLQQARGQQRVAQGSGPVQRREARPGASRRR 217

Query: 267 GPG-------PRGCAKGSVGRGGARAAPNHTHVVP 294
           GP        PR    G + + GA    +  H  P
Sbjct: 218 GPALQQQLGHPRVSVPGGLVQRGAPRPVHRAHRGP 252


>gi|239741003 PREDICTED: hypothetical protein LOC643965 [Homo
           sapiens]
          Length = 487

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 49/155 (31%), Positives = 59/155 (38%), Gaps = 25/155 (16%)

Query: 149 RGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLPEHSPLRAL 208
           R  PG    P PAR  E      ++R P   SG    G       A++ R      L+  
Sbjct: 114 RAIPGVH--PRPARQEE------AQRRPAPRSGSHEQG-------AVQARAAGRQQLQHR 158

Query: 209 KPLAVGGP-RGRRAGRLGSLR-RGLRLGRQRVQQRGGLPVQWSRGPRDLCWLRPTAGCNR 266
           +P A G P R R A R+  LR RG R  R   Q RG   V    GP      RP A   R
Sbjct: 159 QPPARGRPVRRRPAARVLRLRCRGSR-ARSLQQARGQQRVAQGSGPVQRREARPGASRRR 217

Query: 267 GPG-------PRGCAKGSVGRGGARAAPNHTHVVP 294
           GP        PR    G + + GA    +  H  P
Sbjct: 218 GPALQQQLGHPRVSVPGGLVQRGAPRPVHRAHRGP 252


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 41/151 (27%), Positives = 55/151 (36%), Gaps = 30/151 (19%)

Query: 139  GEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERR 198
            GE  PAG    G+PGA   P P   A + G R    GP   +GP                
Sbjct: 1037 GETGPAGPP--GAPGAPGAPGPVGPAGKSGDR-GETGPAGPAGPV--------------- 1078

Query: 199  LPEHSPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRVQQRGGLPVQWSRGPRDLCWL 258
                 P+ A  P    GPRG +        RG++        RG   +Q   GP      
Sbjct: 1079 ----GPVGARGPAGPQGPRGDKGETGEQGDRGIK------GHRGFSGLQGPPGPPGSPGE 1128

Query: 259  RPTAGCNRGPGPRG--CAKGSVGRGGARAAP 287
            +  +G +   GPRG   + G+ G+ G    P
Sbjct: 1129 QGPSGASGPAGPRGPPGSAGAPGKDGLNGLP 1159



 Score = 32.3 bits (72), Expect = 0.51
 Identities = 43/148 (29%), Positives = 51/148 (34%), Gaps = 26/148 (17%)

Query: 141 GTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLP 200
           G P     RG PG+R  P    VA   G      G R   GP                 P
Sbjct: 479 GLPGPPGERGGPGSRGFPGADGVAGPKGP----AGERGSPGPAG---------------P 519

Query: 201 EHSPLRALKPLAVGGPRGR-RAGRLGSLRRGLRLGRQRVQQRGGLPVQWSRGPRDLCWLR 259
           + SP  A +P   G P  +   G  GS     + G      + G P     GP      R
Sbjct: 520 KGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRP-----GPPGPPGAR 574

Query: 260 PTAGCNRGPGPRGCAKGSVGRGGARAAP 287
             AG    PGP+G A G  G+ G R  P
Sbjct: 575 GQAGVMGFPGPKGAA-GEPGKAGERGVP 601


>gi|124378039 SEC16 homolog A [Homo sapiens]
          Length = 2357

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 32/95 (33%), Positives = 41/95 (43%), Gaps = 21/95 (22%)

Query: 140 EGTPAGSSWRGSPGARRLPLPARVAERGG-------ARVSRRGPRWD-SGPQTGGQAHAE 191
           + TP GSS + SP   + P PA  ++  G       AR S +GP     GP T  +AHA 
Sbjct: 63  QSTPLGSSSKSSPPVLQGPAPAGFSQHPGLLVPHTHARDSSQGPCEPLPGPLTQPRAHA- 121

Query: 192 LLALERRLPEHSPLR-ALKPLAVGGPRGRRAGRLG 225
                      SP   AL P A  GP   R+  +G
Sbjct: 122 -----------SPFSGALTPSAPPGPEMNRSAEVG 145


>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 373

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 50/171 (29%), Positives = 58/171 (33%), Gaps = 47/171 (27%)

Query: 139 GEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPR-WDSGPQTGGQAHAELLALER 197
           G G   GS  R   G R   + +R+A  G  R     PR W      GGQ    L   + 
Sbjct: 137 GRGAVRGSGKRRGWGLRPQRVRSRLAGLGAPRGGAAAPRGW------GGQGAERLGVHQP 190

Query: 198 RLPEH-------------------SPLRALKPLAVGGPRGRRAGRLGSLRRGLRLGRQRV 238
            LP H                   SP RA +P + G PR RR   LGS  R    GR  +
Sbjct: 191 GLPTHAALRGGGGGSEGGGGGARPSPPRARQPPS-GRPRPRRTRLLGSAER--HTGRAAL 247

Query: 239 QQRGGLPVQWSRGPRDLCWLRPTAGCNRGPGPRGCAKGSVG-----RGGAR 284
            + G L              RP A        RG A          RGGAR
Sbjct: 248 ARHGQLS-------------RPHAAVRNSSRGRGAATSVSAAARPTRGGAR 285



 Score = 29.3 bits (64), Expect = 4.3
 Identities = 55/184 (29%), Positives = 67/184 (36%), Gaps = 43/184 (23%)

Query: 130 PWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAH 189
           P AP+        P  +   GSP  RR     R+A   G    R  PR   G        
Sbjct: 64  PTAPVSFSRIRRNPLRTQLSGSP-PRRPTSVLRLASPAGDLPRRPRPRAGGG-------- 114

Query: 190 AELLALERRLPEHSPLRALKPLAVGGPRGR-RAGR---LGS-LRRGLRLGRQRVQQ---- 240
                       HSP  A+  +  GG +GR R GR    GS  RRG  L  QRV+     
Sbjct: 115 -----------RHSPRPAVGTIFRGGRKGRLREGRGAVRGSGKRRGWGLRPQRVRSRLAG 163

Query: 241 ----RGG--LPVQWSRGPRDLCWLR----PTAGCNRGPGPRGCAKGSVGRGGARAAPNHT 290
               RGG   P  W     +   +     PT    RG G  G ++G  G GGAR +P   
Sbjct: 164 LGAPRGGAAAPRGWGGQGAERLGVHQPGLPTHAALRGGG--GGSEG--GGGGARPSPPRA 219

Query: 291 HVVP 294
              P
Sbjct: 220 RQPP 223


>gi|33667117 MICAL-like 2 isoform 1 [Homo sapiens]
          Length = 904

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 48/185 (25%), Positives = 65/185 (35%), Gaps = 32/185 (17%)

Query: 52  REALSRRKRRREPGEGAAAPGMVPAGDSRPLTALLACNLNPFYLLIREPKTSPEALRLRL 111
           ++ALS  +    P  G  +P       S+P T                P+ SP A  L+ 
Sbjct: 457 KQALSALEEAGAPAPGRPSPATAAVPSSQPKT--------------EAPQASPLAKPLQ- 501

Query: 112 AGLKASPSFKDPESRFMEPWAPLPLL----------VGEGTPAGSSWRGSPGARRLPLPA 161
               +SP      SR MEP APL              G    A SS  G  GA   P P 
Sbjct: 502 ---SSSPRVLGLPSR-MEPPAPLSTSSTSQASALPPAGRRNLAESSGVGRVGAGSRPKPE 557

Query: 162 RVAERGGARVSRR--GPRWDSGPQTGGQA-HAELLALERRLPEHSPLRALKPLAVGGPRG 218
               +G +    +        G + G     A L  ++RR P    L+  +P A+  PR 
Sbjct: 558 APMAKGKSTTLTQDMSTSLQEGQEDGPAGWRANLKPVDRRSPAERTLKPKEPRALAEPRA 617

Query: 219 RRAGR 223
             A R
Sbjct: 618 GEAPR 622


>gi|6912446 potassium voltage-gated channel, subfamily H, member 4
           [Homo sapiens]
          Length = 1017

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 48/152 (31%), Positives = 57/152 (37%), Gaps = 19/152 (12%)

Query: 63  EPGEGAAA------PGMVPAGDSRPLTALLACNLNPFYLLIREPKTSPEALRLRLAGLKA 116
           EPG G         P + PA     L +LL   L PF  L+  P  SP +L   LAG   
Sbjct: 733 EPGGGPRPRRPLLLPNLSPARPRGSLVSLLGEELPPFSALVSSPSLSP-SLSPALAGQGH 791

Query: 117 SPSFKDPESRFMEPWAPLPLLV---GEGTPAGSSWRGSPGARRLPLPARVAERGGARVSR 173
           S S   P  R    W P  LL+   G   P   S R   G   +      AE    R SR
Sbjct: 792 SASPHGP-PRCSAAWKPPQLLIPPLGTFGPPDLSPRIVDG---IEDSGSTAEAPSFRFSR 847

Query: 174 R----GPRWDSGPQTGGQAHAELLALERRLPE 201
           R     PR    P TG +   EL +    + E
Sbjct: 848 RPELPRPR-SQAPPTGTRPSPELASEAEEVKE 878


>gi|239756566 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 214

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 37/129 (28%), Positives = 49/129 (37%), Gaps = 16/129 (12%)

Query: 104 PEALRLRLAGLKASPSFKDPESRFMEPWAPLPLLVGEGTPAGSSWRGSPGARRLPLPARV 163
           P    +R+ G++ +P   DP+++   P +       +    G S  G  G R  P  A  
Sbjct: 67  PPTRAIRMQGIRNTPG-GDPKAQACFPTSAANRSF-QPRSLGGSLAGIAGPRPSPCQAHD 124

Query: 164 AERGGA-RVSRRGPRWDSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVG-GPRGRRA 221
            ERGG  R S R    D G                R+P   PL  L P A   G  GR +
Sbjct: 125 CERGGGGRPSHRAAAVDQGRP------------RPRVPRGQPLPGLHPSAAAPGVGGRAS 172

Query: 222 GRLGSLRRG 230
           G  G L  G
Sbjct: 173 GAGGLLGEG 181


>gi|20336196 A-kinase anchor protein 7 isoform beta [Homo sapiens]
          Length = 104

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 170 RVSRRGPRWDSGPQTGGQA-HAELLALERRLPEHSPLRALK 209
           R S+  P W SG + GG+   AEL+ L +RL E++ L+A++
Sbjct: 29  RYSKDIPSWSSGEKNGGEPDDAELVRLSKRLVENAVLKAVQ 69


>gi|51242137 transmembrane protein 200B [Homo sapiens]
          Length = 307

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 53/187 (28%), Positives = 73/187 (39%), Gaps = 35/187 (18%)

Query: 98  REPKTSPEALRLRLAGLKASPSFKDPESRFMEPWAPLPLLVGEGTPAGSSW---RGSPGA 154
           R P++ PE LR+R     A    + P   F    A L +LVG G      W    G+PG+
Sbjct: 31  RRPRSPPEPLRVR-----ARLRLRSPSGAFAALGA-LVVLVGMGIAVAGYWPHRAGAPGS 84

Query: 155 RRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVG 214
           R     A  +    + + R G       + GG+AH            H  LR L P+ +G
Sbjct: 85  R----AANASSPQMSELRREG-------RGGGRAHG----------PHERLRLLGPVIMG 123

Query: 215 GPRGRRAGRLGSLRRGLRLGRQRVQQRGGLPVQWSR---GPRDLCWLRPTAGCNRGPGPR 271
                       L     L  +R++Q G L  Q  R   GP   C L P+ G  R P   
Sbjct: 124 VGLFVFICANTLLYENRDLETRRLRQ-GVLRAQALRPPDGPGWDCALLPSPG-PRSPRAV 181

Query: 272 GCAKGSV 278
           GCA+  +
Sbjct: 182 GCAEPEI 188


>gi|223278356 glutamate receptor, ionotropic, N-methyl-D-aspartate
           3A [Homo sapiens]
          Length = 1115

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 17/118 (14%)

Query: 90  LNPFYLLIREPKTSPEALRLRLAGLKASPSFKDP-------------ESRFMEPWAPLPL 136
           L+ ++LL R     P    L LAG+ +S S   P              +  ++PW   P 
Sbjct: 4   LSLWWLLSRVCLLLPPPCALVLAGVPSSSSHPQPCQILKRIGHAVRVGAVHLQPWTTAPR 63

Query: 137 LVG---EGTPAGSSW-RGSPGARRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHA 190
                 + + AG+      PG RR P P+  A   G+ +  RGP     P  G +A A
Sbjct: 64  AASRAPDDSRAGAQRDEPEPGTRRSPAPSPGARWLGSTLHGRGPPGSRKPGEGARAEA 121


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.138    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,328,126
Number of Sequences: 37866
Number of extensions: 853942
Number of successful extensions: 3663
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 210
Number of HSP's that attempted gapping in prelim test: 3463
Number of HSP's gapped (non-prelim): 398
length of query: 295
length of database: 18,247,518
effective HSP length: 102
effective length of query: 193
effective length of database: 14,385,186
effective search space: 2776340898
effective search space used: 2776340898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press