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Search of human proteins with 239741937
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741937 PREDICTED: hypothetical protein [Homo sapiens]
(167 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741937 PREDICTED: hypothetical protein [Homo sapiens] 354 2e-98
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 42 3e-04
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 39 0.003
gi|148229134 ring finger and KH domain containing 2 [Homo sapiens] 39 0.003
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens] 38 0.004
gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo ... 37 0.006
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 37 0.008
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 37 0.010
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens] 36 0.013
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens] 36 0.013
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens] 36 0.013
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 36 0.013
gi|239754301 PREDICTED: hypothetical protein XP_002345934 [Homo ... 36 0.018
gi|239751929 PREDICTED: hypothetical protein [Homo sapiens] 36 0.018
gi|239748840 PREDICTED: hypothetical protein XP_002346835 [Homo ... 36 0.018
gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo ... 36 0.018
gi|239742867 PREDICTED: hypothetical protein XP_002342667 [Homo ... 36 0.018
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 35 0.023
gi|239742474 PREDICTED: hypothetical protein [Homo sapiens] 35 0.023
gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo s... 35 0.030
gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo s... 35 0.030
gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo ... 35 0.030
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 35 0.030
gi|239752679 PREDICTED: hypothetical protein [Homo sapiens] 35 0.030
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 35 0.030
gi|239747216 PREDICTED: hypothetical protein XP_002346941 [Homo ... 35 0.030
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] 35 0.030
gi|239741024 PREDICTED: hypothetical protein XP_002342070 [Homo ... 35 0.030
>gi|239741937 PREDICTED: hypothetical protein [Homo sapiens]
Length = 167
Score = 354 bits (909), Expect = 2e-98
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 1 MSHHHPRHIPPALVPTMPSDAKLSTRLVTFPQPLPVVHVGSLQRFRVRDDPAGHDALKGG 60
MSHHHPRHIPPALVPTMPSDAKLSTRLVTFPQPLPVVHVGSLQRFRVRDDPAGHDALKGG
Sbjct: 1 MSHHHPRHIPPALVPTMPSDAKLSTRLVTFPQPLPVVHVGSLQRFRVRDDPAGHDALKGG 60
Query: 61 QVLLRHRGERQAPHGVALPGQRHLGGPRGGAAASAGQGANRPTPRTRGSRSTPQQPRGPR 120
QVLLRHRGERQAPHGVALPGQRHLGGPRGGAAASAGQGANRPTPRTRGSRSTPQQPRGPR
Sbjct: 61 QVLLRHRGERQAPHGVALPGQRHLGGPRGGAAASAGQGANRPTPRTRGSRSTPQQPRGPR 120
Query: 121 QRPTGQHRRRDGDLGLLLGGGPVLRARRGRAGSRWLRAWKWPRAPTG 167
QRPTGQHRRRDGDLGLLLGGGPVLRARRGRAGSRWLRAWKWPRAPTG
Sbjct: 121 QRPTGQHRRRDGDLGLLLGGGPVLRARRGRAGSRWLRAWKWPRAPTG 167
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 41.6 bits (96), Expect = 3e-04
Identities = 41/127 (32%), Positives = 51/127 (40%), Gaps = 22/127 (17%)
Query: 49 DDPAGHDALKGGQVLLRHRGERQAPHGVALPGQRHLGGPRG--GAAASAGQ----GANRP 102
+ PAG+D G + RG+R P LPG + G G GA AGQ G+ P
Sbjct: 1049 EGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGP 1108
Query: 103 --TPRTRGSRSTPQQPRGPRQRPTGQHRRRDGDLGLLLGGGPVLRARRGRAGSRWLRAWK 160
P G R P P+GPR G H R GD R ++G G L+
Sbjct: 1109 IGPPGRAGKRGLP-GPQGPR-GDKGDHGDR-GD-----------RGQKGHRGFTGLQGLP 1154
Query: 161 WPRAPTG 167
P P G
Sbjct: 1155 GPPGPNG 1161
Score = 32.3 bits (72), Expect = 0.19
Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 12/96 (12%)
Query: 68 GERQAPHGVALPGQRHLGGPRGGAAASAGQGANRPTPRTRGSRSTPQQPRGP----RQRP 123
GER AP PG L GP+G G++ P +GS+ P +P P +
Sbjct: 519 GERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGP----KGSQGDPGRPGEPGLPGARGL 574
Query: 124 TGQH--RRRDGDLGLLLGGGPVLRARRGRAGSRWLR 157
TG + +G LG L G P R G GS +R
Sbjct: 575 TGNPGVQGPEGKLGPL--GAPGEDGRPGPPGSIGIR 608
Score = 28.5 bits (62), Expect = 2.8
Identities = 34/134 (25%), Positives = 41/134 (30%), Gaps = 22/134 (16%)
Query: 51 PAGHDALKGGQVLLRHRGERQAPHGVALPGQRHLGGPRG-----------------GAAA 93
P G KG Q GE P L G + GP G G+
Sbjct: 547 PVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIG 606
Query: 94 SAGQGANRPTPRTRGSRSTPQQPRGPRQRPTGQHRRRDGDLGLLLGGGPVLRARRGRAGS 153
GQ + P +GS P +P R G G + GPV G G
Sbjct: 607 IRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPV-----GPPGL 661
Query: 154 RWLRAWKWPRAPTG 167
R + P PTG
Sbjct: 662 AGERGEQGPPGPTG 675
Score = 28.5 bits (62), Expect = 2.8
Identities = 26/88 (29%), Positives = 31/88 (35%), Gaps = 13/88 (14%)
Query: 51 PAGHDALKGGQVLLRHRGERQAPHGVALPGQRHLGGPRG-----GAAASAGQGANRPTPR 105
P G LKGG RG + P PG GP G G A G+ P
Sbjct: 889 PNGVPGLKGG------RGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPG 942
Query: 106 TRGSRSTPQQ--PRGPRQRPTGQHRRRD 131
RG + + RGP P G + D
Sbjct: 943 LRGDPGSHGRVGDRGPAGPPGGPGDKGD 970
Score = 28.1 bits (61), Expect = 3.7
Identities = 30/111 (27%), Positives = 37/111 (33%), Gaps = 31/111 (27%)
Query: 68 GERQAPHGVALPGQRHLG------GPRGGAAASAGQGANRP-----TPRTRGSRSTPQQP 116
GER P LPG++ + GP+G S G P P RG TP P
Sbjct: 717 GERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTP-GP 775
Query: 117 RGPRQRPTGQHRRRDGDLGLLLGGGPVLRARRGRAGSRWLRAWKWPRAPTG 167
+G R GG + G AG+ R P P G
Sbjct: 776 KGDR-------------------GGIGEKGAEGTAGNDGARGLPGPLGPPG 807
Score = 28.1 bits (61), Expect = 3.7
Identities = 34/121 (28%), Positives = 42/121 (34%), Gaps = 7/121 (5%)
Query: 52 AGHDALKGGQVLLRHRGERQAPHGVALPGQRHLGGPRGGAAASAGQGANRPTPRTRGSRS 111
AG+D +G L G PG R L GP G +G N PT +
Sbjct: 791 AGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAV--GFA 848
Query: 112 TPQQPRG-PRQRPTGQHRRRDGDLGLL----LGGGPVLRARRGRAGSRWLRAWKWPRAPT 166
PQ P G P + + GD G L G P G G + R + P T
Sbjct: 849 GPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGAT 908
Query: 167 G 167
G
Sbjct: 909 G 909
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 38.9 bits (89), Expect = 0.002
Identities = 50/159 (31%), Positives = 60/159 (37%), Gaps = 7/159 (4%)
Query: 10 PPALVPTMPSDAKLSTRLVTFPQPLPVVHVGSLQRFRVRDDPAGHDA--LKGGQVLLRHR 67
PP + S L+ L P PL +GS R+ AG A L R R
Sbjct: 257 PPLARLLLASAVSLAASLARSPPPLQP-RLGSASPPRLAAPLAGSRAPSLSPFPRRCRRR 315
Query: 68 GERQ-APHGVALPGQRHLGGPRGGAAASAGQGANRPTPRTRG-SRSTPQQPRGPRQRPTG 125
ER A HG+ LP GG GA G R R +G + +P P GP P
Sbjct: 316 AERSPAGHGLPLPRSLSRGGEVVGARRRRGGEERRVRGRRQGCALGSPPIPAGP-AAPGR 374
Query: 126 QHRRRDGDLGLLLGGGPVLRARRGRAGSRWLRAWKWPRA 164
RR GGGP + R G G +R PRA
Sbjct: 375 AGERRAARQWRKRGGGPGVSPREGAQG-EGVRGGVTPRA 412
Score = 27.7 bits (60), Expect = 4.8
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 51 PAGHDALKGGQVLLRHRGERQAPHGVALPGQRHLGGPRGGAAASAGQG----ANRPTPRT 106
P+ H +G + R + E+QA H P G A+ A RP PR
Sbjct: 176 PSAHPPGRGSGRVPRGQPEQQAWE----QRSSHFLAPEGSVASLLPSAKPARAPRPAPRA 231
Query: 107 RGSRSTPQQPRGPRQRPTGQHRRRDGDLGLLL 138
R + + RG +RP + + L LL
Sbjct: 232 REEAAAGSRGRGGAERPAARGSAQQPPLARLL 263
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 38.9 bits (89), Expect = 0.002
Identities = 50/159 (31%), Positives = 60/159 (37%), Gaps = 7/159 (4%)
Query: 10 PPALVPTMPSDAKLSTRLVTFPQPLPVVHVGSLQRFRVRDDPAGHDA--LKGGQVLLRHR 67
PP + S L+ L P PL +GS R+ AG A L R R
Sbjct: 257 PPLARLLLASAVSLAASLARSPPPLQP-RLGSASPPRLAAPLAGSRAPSLSPFPRRCRRR 315
Query: 68 GERQ-APHGVALPGQRHLGGPRGGAAASAGQGANRPTPRTRG-SRSTPQQPRGPRQRPTG 125
ER A HG+ LP GG GA G R R +G + +P P GP P
Sbjct: 316 AERSPAGHGLPLPRSLSRGGEVVGARRRRGGEERRVRGRRQGCALGSPPIPAGP-AAPGR 374
Query: 126 QHRRRDGDLGLLLGGGPVLRARRGRAGSRWLRAWKWPRA 164
RR GGGP + R G G +R PRA
Sbjct: 375 AGERRAARQWRKRGGGPGVSPREGAQG-EGVRGGVTPRA 412
Score = 27.7 bits (60), Expect = 4.8
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 51 PAGHDALKGGQVLLRHRGERQAPHGVALPGQRHLGGPRGGAAASAGQG----ANRPTPRT 106
P+ H +G + R + E+QA H P G A+ A RP PR
Sbjct: 176 PSAHPPGRGSGRVPRGQPEQQAWE----QRSSHFLAPEGSVASLLPSAKPARAPRPAPRA 231
Query: 107 RGSRSTPQQPRGPRQRPTGQHRRRDGDLGLLL 138
R + + RG +RP + + L LL
Sbjct: 232 REEAAAGSRGRGGAERPAARGSAQQPPLARLL 263
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 38.5 bits (88), Expect = 0.003
Identities = 41/134 (30%), Positives = 53/134 (39%), Gaps = 21/134 (15%)
Query: 49 DDPAGHDALKGGQVLLRHRGERQAPHGVALPGQRHLGGPRGGAAASAGQGANRP-----T 103
D G D GG+ RGE +P PG GP G A S +G + P
Sbjct: 1019 DGLPGRDGSPGGK---GDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGA 1075
Query: 104 PRTRGSRSTPQQPRGPR--QRPTGQ--------HRRRDGDLGLLLGGGPVLRARRGRAGS 153
P GSR P P+GPR + TG+ HR G+ G G P ++G GS
Sbjct: 1076 PGPAGSRGAP-GPQGPRGDKGETGERGAAGIKGHRGFPGNPG--APGSPGPAGQQGAIGS 1132
Query: 154 RWLRAWKWPRAPTG 167
+ P P+G
Sbjct: 1133 PGPAGPRGPVGPSG 1146
Score = 31.2 bits (69), Expect = 0.43
Identities = 37/116 (31%), Positives = 42/116 (36%), Gaps = 15/116 (12%)
Query: 52 AGHDALKGGQVLLRHRGERQAPHGVALPGQRHLGGPRGGAAASAGQGANRPTPRTRGSRS 111
AG GG+ GER P PG R GP G G+GA P P G+
Sbjct: 665 AGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPG---PEGGKGAAGP-PGPPGAAG 720
Query: 112 TPQQPRGPRQRPTGQHRRRDGDLGLLLGGGPVLRARRGRAGSRWLRAWKWPRAPTG 167
TP P +R GD G GGP G+ G PR PTG
Sbjct: 721 TPGLQGMPGERGGLGSPGPKGDKG--EPGGPGADGVPGKDG---------PRGPTG 765
Score = 30.8 bits (68), Expect = 0.56
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 51 PAGHDALKGGQVLLRHRGERQAPHGVALPGQRHLGGPRGGAAASAGQG-ANRPTPR-TRG 108
PAG G +GER AP G++ GGP G A G G A P P+ +G
Sbjct: 808 PAGFPGAPGQNGEPGGKGERGAP------GEKGEGGPPGVAGPPGGSGPAGPPGPQGVKG 861
Query: 109 SRSTPQQP 116
R +P P
Sbjct: 862 ERGSPGGP 869
Score = 29.3 bits (64), Expect = 1.6
Identities = 36/132 (27%), Positives = 42/132 (31%), Gaps = 15/132 (11%)
Query: 51 PAGHDALKGGQVLLRHRGERQAPHGVALPGQRHLGGPRG--------GAAASAGQGANRP 102
PAG G H G +P PG+ GP G G + AG+
Sbjct: 175 PAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESG 234
Query: 103 TPRTRGSRSTPQQP--RGPRQRP----TGQHRRRDGDLGLL-LGGGPVLRARRGRAGSRW 155
P G R P P +GP P HR DG G G P L+ G G
Sbjct: 235 RPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENG 294
Query: 156 LRAWKWPRAPTG 167
PR G
Sbjct: 295 APGPMGPRGAPG 306
Score = 29.3 bits (64), Expect = 1.6
Identities = 26/82 (31%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 49 DDPAGHDALKGGQVLLRHRGERQAP--HGVA----LPGQRHLGGPRG-----GAAASAGQ 97
D G G L GER AP G A +PG++ G RG G +AG+
Sbjct: 464 DGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGE 523
Query: 98 GANRPTPRTRGSRSTPQQPRGP 119
P G R P P GP
Sbjct: 524 PGRDGVPGGPGMRGMPGSPGGP 545
Score = 27.7 bits (60), Expect = 4.8
Identities = 31/119 (26%), Positives = 36/119 (30%), Gaps = 7/119 (5%)
Query: 51 PAGHDALKGGQVLLRHRGERQAPHGVALPGQRHLGGPRG--GAAASAGQGANRPTPRTRG 108
P G G G +P PGQR GP+G GA G +P +G
Sbjct: 337 PPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKG 396
Query: 109 SRSTPQQPRGPRQRPTGQHRRRDGDLGLLLGGGPVLRARRGRAGSRWLRAWKWPRAPTG 167
P P R G G G P LR G G + PR G
Sbjct: 397 EMGPAGIPGAPGLMGA---RGPPGPAG--ANGAPGLRGGAGEPGKNGAKGEPGPRGERG 450
Score = 27.7 bits (60), Expect = 4.8
Identities = 22/77 (28%), Positives = 26/77 (33%), Gaps = 13/77 (16%)
Query: 51 PAGHDALKGGQVLLRHRGERQAPHGVALPGQRHLGGPRG-----GAAASAGQGANRPTPR 105
P G +KG RG P PG R L GP G G +G P
Sbjct: 853 PPGPQGVKG------ERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPG 906
Query: 106 TRGSRSTPQQP--RGPR 120
G+ P P GP+
Sbjct: 907 PAGNTGAPGSPGVSGPK 923
>gi|148229134 ring finger and KH domain containing 2 [Homo sapiens]
Length = 659
Score = 38.5 bits (88), Expect = 0.003
Identities = 38/127 (29%), Positives = 49/127 (38%), Gaps = 12/127 (9%)
Query: 17 MPSDAKLSTRLVTFPQPLPVVHVGSLQRFRVRDDPAGHDALKGGQVLLRHRGERQAPHGV 76
MPS + + L P PLP P+G L+G +LLR ER A G+
Sbjct: 1 MPSGSSAALALAAAPAPLPQPPPPPPPPPPPLPPPSGGPELEGDGLLLR---ERLAALGL 57
Query: 77 ALPGQRHLGGPRGGAAASAGQG-ANRPTPRTRGSRSTPQQPRGP--------RQRPTGQH 127
P G P A A+A QG A R + R+ P +P P G+
Sbjct: 58 DDPSPAEPGAPALRAPAAAAQGQARRAAELSPEERAPPGRPGAPEAAELELEEDEEEGEE 117
Query: 128 RRRDGDL 134
DGDL
Sbjct: 118 AELDGDL 124
>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
Length = 1714
Score = 38.1 bits (87), Expect = 0.004
Identities = 44/142 (30%), Positives = 60/142 (42%), Gaps = 29/142 (20%)
Query: 51 PAGHDALKGGQVLLRHRGERQAPHG----------VALPGQRHLGGPRGGAAASAGQGAN 100
P+G + G Q LL +G Q HG + PG++ L G RGG + GA
Sbjct: 1274 PSGKPGIPGLQGLLGPKGI-QGYHGADGISGNPGKIGPPGKQGLPGIRGGPGRTGLAGAP 1332
Query: 101 RPTPRTRGSRSTPQQP--RGPR--QRPTGQ--------HRRRDGDLGLLLGGGPVLRARR 148
P P +GS P P +GP+ Q GQ HR GD G G P L+ +
Sbjct: 1333 GP-PGVKGSSGLPGSPGIQGPKGEQGLPGQPGIQGKRGHRGAQGDQGPC--GDPGLKGQP 1389
Query: 149 GRAGSRWL---RAWKWPRAPTG 167
G G + L + + P+ P G
Sbjct: 1390 GEYGVQGLTGFQGFPGPKGPEG 1411
>gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo
sapiens]
Length = 351
Score = 37.4 bits (85), Expect = 0.006
Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 33 PLPVVHVGSLQRFRVRDDPAGHDALKGGQVLLRHRGERQAPHGVALPGQRHLGGPRGGAA 92
P PVVHVG + + DP G G + ++ P + L QR G A
Sbjct: 186 PAPVVHVGPV--LPLLHDPVGVPLAPLGHGGVDWAENKERPRRLRLRSQRFRPPSPGAAR 243
Query: 93 ASAGQGANRPTPRTRGSRSTPQQPRGPRQRPTGQHRR 129
+ + A RP PR R P PR R+ G RR
Sbjct: 244 SQLPETARRPRPRPR-----PALPRRAREPQPGSGRR 275
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 37.0 bits (84), Expect = 0.008
Identities = 49/166 (29%), Positives = 65/166 (39%), Gaps = 12/166 (7%)
Query: 9 IPPALVPTMPS-----DAKLSTRLVTFPQPLPVV-HVGSLQRFRVRDDPAGHDA--LKGG 60
+ P++ P++P + R P+P P+ +GS R+ AG A L
Sbjct: 155 VRPSVGPSLPRRHCRRHCRCHCRRRPLPKPPPLQPRLGSASPPRLAAPLAGSRAPSLSPF 214
Query: 61 QVLLRHRGERQ-APHGVALPGQRHLGGPRGGAAASAGQGANRPTPRTRG-SRSTPQQPRG 118
R R ER A HG+ LP GG GA G R R +G + +P P G
Sbjct: 215 PRRCRRRAERSPAGHGLPLPRSLSRGGEVVGARRRRGGEERRVRGRRQGCALGSPPIPAG 274
Query: 119 PRQRPTGQHRRRDGDLGLLLGGGPVLRARRGRAGSRWLRAWKWPRA 164
P P RR GGGP + R G G +R PRA
Sbjct: 275 P-AAPGRAGERRAARQWRKRGGGPGVSPREGAQG-EGVRGGVTPRA 318
Score = 27.7 bits (60), Expect = 4.8
Identities = 29/97 (29%), Positives = 37/97 (38%), Gaps = 18/97 (18%)
Query: 76 VALPGQRHLG-----------GPRGGAAASAGQGANRPTPRTRGSRSTP-QQPRG----- 118
+ALPG R LG GP GA + G P PR R + S+ ++P
Sbjct: 77 LALPGSRRLGRVPLTFREASPGPAPGAPRARGSCGREPGPRRRRAPSSAGKRPAAAARAA 136
Query: 119 -PRQRPTGQHRRRDGDLGLLLGGGPVLRARRGRAGSR 154
PRQR + R + GP L R R R
Sbjct: 137 PPRQRSLARCLPRSVGSCVRPSVGPSLPRRHCRRHCR 173
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 36.6 bits (83), Expect = 0.010
Identities = 32/98 (32%), Positives = 35/98 (35%), Gaps = 17/98 (17%)
Query: 73 PHGVALPGQRHLGGPRGGAAASAGQ-----GANRPTPRTRGSRSTPQQPR--GPRQRPTG 125
PHG+ PG G P GG G G P P G P PR GP P G
Sbjct: 616 PHGLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRG 675
Query: 126 QHRRRDGDLGLLLGG----------GPVLRARRGRAGS 153
DG + GG GP R R GR G+
Sbjct: 676 GDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGN 713
Score = 30.8 bits (68), Expect = 0.56
Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 67 RGERQAPHGVALPGQRHLGGPRGGAAASAGQGANRPTPRTRGSRSTPQQPRGPRQRPTGQ 126
RG R G P R GGP GG G + G+ S + GP
Sbjct: 723 RGARGGRSGGGPPNGR--GGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSG 780
Query: 127 HRRRDGDLGLLLGGG 141
HR +G G + GGG
Sbjct: 781 HRPHEGPGGSMGGGG 795
Score = 28.9 bits (63), Expect = 2.1
Identities = 19/61 (31%), Positives = 24/61 (39%)
Query: 80 GQRHLGGPRGGAAASAGQGANRPTPRTRGSRSTPQQPRGPRQRPTGQHRRRDGDLGLLLG 139
G R GP GG S+G + GS P + G G HR +G G + G
Sbjct: 750 GHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGGGISG 809
Query: 140 G 140
G
Sbjct: 810 G 810
>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 36.2 bits (82), Expect = 0.013
Identities = 38/116 (32%), Positives = 45/116 (38%), Gaps = 9/116 (7%)
Query: 46 RVRDDPAGHDALKGGQVLLRHRGERQAPH-GVALPGQRHLGGPRGGAAASAGQGAN-RPT 103
RVR AG A +GG R G + A GV PG RGG S G G RP+
Sbjct: 156 RVRSRLAGLGAPRGGAAAPRGWGGQGAERLGVHQPGLPTHAALRGGGGGSEGGGGGARPS 215
Query: 104 PRTRGSRSTPQQPRGPRQRPTGQHRRRDGDLGLLLGG------GPVLRARRGRAGS 153
P R + +PR R R G R G L G V + RGR +
Sbjct: 216 P-PRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSRGRGAA 270
Score = 29.6 bits (65), Expect = 1.3
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 95 AGQGANRPTPRTRGSRSTPQQPRGPRQRPTGQHRRRDGDLGLLLGGGPVLRARRGRA--- 151
+G RPT R + PR PR R G +G + GG R R GR
Sbjct: 83 SGSPPRRPTSVLRLASPAGDLPRRPRPRAGGGRHSPRPAVGTIFRGGRKGRLREGRGAVR 142
Query: 152 GSRWLRAW 159
GS R W
Sbjct: 143 GSGKRRGW 150
Score = 27.3 bits (59), Expect = 6.2
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 92 AASAGQGANRPTPRTRGSRSTPQQPRGPRQRPTGQHRRRDGDLGLLLGGG 141
A+ AG RP PR G R +P+ G R + R R+G G + G G
Sbjct: 97 ASPAGDLPRRPRPRAGGGRHSPRPAVGTIFRGGRKGRLREG-RGAVRGSG 145
>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 36.2 bits (82), Expect = 0.013
Identities = 38/116 (32%), Positives = 45/116 (38%), Gaps = 9/116 (7%)
Query: 46 RVRDDPAGHDALKGGQVLLRHRGERQAPH-GVALPGQRHLGGPRGGAAASAGQGAN-RPT 103
RVR AG A +GG R G + A GV PG RGG S G G RP+
Sbjct: 156 RVRSRLAGLGAPRGGAAAPRGWGGQGAERLGVHQPGLPTHAALRGGGGGSEGGGGGARPS 215
Query: 104 PRTRGSRSTPQQPRGPRQRPTGQHRRRDGDLGLLLGG------GPVLRARRGRAGS 153
P R + +PR R R G R G L G V + RGR +
Sbjct: 216 P-PRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSRGRGAA 270
Score = 29.6 bits (65), Expect = 1.3
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 95 AGQGANRPTPRTRGSRSTPQQPRGPRQRPTGQHRRRDGDLGLLLGGGPVLRARRGRA--- 151
+G RPT R + PR PR R G +G + GG R R GR
Sbjct: 83 SGSPPRRPTSVLRLASPAGDLPRRPRPRAGGGRHSPRPAVGTIFRGGRKGRLREGRGALR 142
Query: 152 GSRWLRAW 159
GS R W
Sbjct: 143 GSGKRRGW 150
Score = 28.5 bits (62), Expect = 2.8
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 92 AASAGQGANRPTPRTRGSRSTPQQPRGPRQRPTGQHRRRDGDLGLLLGGG 141
A+ AG RP PR G R +P+ G R + R R+G G L G G
Sbjct: 97 ASPAGDLPRRPRPRAGGGRHSPRPAVGTIFRGGRKGRLREG-RGALRGSG 145
>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 36.2 bits (82), Expect = 0.013
Identities = 38/116 (32%), Positives = 45/116 (38%), Gaps = 9/116 (7%)
Query: 46 RVRDDPAGHDALKGGQVLLRHRGERQAPH-GVALPGQRHLGGPRGGAAASAGQGAN-RPT 103
RVR AG A +GG R G + A GV PG RGG S G G RP+
Sbjct: 156 RVRSRLAGLGAPRGGAAAPRGWGGQGAERLGVHQPGLPTHAALRGGGGGSEGGGGGARPS 215
Query: 104 PRTRGSRSTPQQPRGPRQRPTGQHRRRDGDLGLLLGG------GPVLRARRGRAGS 153
P R + +PR R R G R G L G V + RGR +
Sbjct: 216 P-PRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSRGRGAA 270
Score = 29.6 bits (65), Expect = 1.3
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 95 AGQGANRPTPRTRGSRSTPQQPRGPRQRPTGQHRRRDGDLGLLLGGGPVLRARRGRA--- 151
+G RPT R + PR PR R G +G + GG R R GR
Sbjct: 83 SGSPPRRPTSVLRLASPAGDLPRRPRPRAGGGRHSPRPAVGTIFRGGRKGRLREGRGALR 142
Query: 152 GSRWLRAW 159
GS R W
Sbjct: 143 GSGKRRGW 150
Score = 28.5 bits (62), Expect = 2.8
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 92 AASAGQGANRPTPRTRGSRSTPQQPRGPRQRPTGQHRRRDGDLGLLLGGG 141
A+ AG RP PR G R +P+ G R + R R+G G L G G
Sbjct: 97 ASPAGDLPRRPRPRAGGGRHSPRPAVGTIFRGGRKGRLREG-RGALRGSG 145
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 36.2 bits (82), Expect = 0.013
Identities = 37/123 (30%), Positives = 47/123 (38%), Gaps = 26/123 (21%)
Query: 67 RGERQAPHGVALPGQRHLGGPRG-----------------GAAASAGQGANRPTPRTRGS 109
RG+ P LPG+ GP+G G S G+ N TP G
Sbjct: 1265 RGQVGPPGDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGL 1324
Query: 110 RSTPQQPRGPRQRPTGQHRR----RDGDLGLLLGG-GPVLRARRGRAGSRWLRAWKWPRA 164
+ +P P GPR P + R G G ++GG GP L R+G G PR
Sbjct: 1325 KGSPGLP-GPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGP---SGPPGPRG 1380
Query: 165 PTG 167
P G
Sbjct: 1381 PLG 1383
Score = 32.0 bits (71), Expect = 0.25
Identities = 38/135 (28%), Positives = 47/135 (34%), Gaps = 21/135 (15%)
Query: 49 DDPAGHDALKGGQVLLRHRGERQAPHGVALPGQRHLGGPRGGAAASAGQGANRPTPRTRG 108
D G L G +G R P + G R GP G AG+ R P G
Sbjct: 1449 DSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLG----EAGEKGERGPPGPAG 1504
Query: 109 SRSTP--------QQPRGPRQRPTGQHRR-----RDGD---LGLLLGGGPVLRARRGRAG 152
SR P + P GP PTG+ R GD +G + G + G AG
Sbjct: 1505 SRGLPGVAGRPGAKGPEGP-PGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAG 1563
Query: 153 SRWLRAWKWPRAPTG 167
R + R P G
Sbjct: 1564 PRGATGVQGERGPPG 1578
Score = 31.6 bits (70), Expect = 0.33
Identities = 35/126 (27%), Positives = 47/126 (37%), Gaps = 12/126 (9%)
Query: 52 AGHDALKGGQVLLRHRGERQAPHGVALPGQRHLGGPRGGAAA----SAGQGANRPTPRTR 107
AG +G + RGE+ LPG GP G + G + P +
Sbjct: 2054 AGRPGERGERGEKGERGEQGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLK 2113
Query: 108 GSRSTP-----QQPRGPRQRPTGQHRRRD-GDLGLLLGGGPVLRARRGRAGSRWLRAWKW 161
G++ P Q P+G R P + R + G G G P L RG AG +
Sbjct: 2114 GAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQ--DGNPGLPGERGMAGPEGKPGLQG 2171
Query: 162 PRAPTG 167
PR P G
Sbjct: 2172 PRGPPG 2177
Score = 29.6 bits (65), Expect = 1.3
Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 15/104 (14%)
Query: 53 GHDALKGGQVLLRHRGERQAPHGVALPGQRHLGGPRGGAAASA----GQGANRPTPRTRG 108
G LKG L RG+ PG+R GP+G A G+G P +
Sbjct: 1320 GAPGLKGSPGLPGPRGD---------PGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDP 1370
Query: 109 SRSTPQQPRGPRQRPTGQHRRRDGDLGLLLGGGPVLRARRGRAG 152
S P PRGP P R G G + G R RG G
Sbjct: 1371 GPSGPPGPRGPLGDP--GPRGPPGLPGTAMKGDKGDRGERGPPG 1412
>gi|239754301 PREDICTED: hypothetical protein XP_002345934 [Homo
sapiens]
Length = 221
Score = 35.8 bits (81), Expect = 0.018
Identities = 41/137 (29%), Positives = 52/137 (37%), Gaps = 33/137 (24%)
Query: 6 PRHIPPALVPTMPSDAKLSTRLVTFPQPLPV-VHVGSLQRFRVRDDPAGHDALKGGQVLL 64
P H+P L P D + + +FP PLP+ +H + R + G Q
Sbjct: 43 PAHVP--LSPGRLLDHPVC--IASFPHPLPLPIHPWTHHR---------GSSCSGSQ--- 86
Query: 65 RHRGERQAPHGVALPGQRHLGGPRGGAAASAGQGANRPTPRTRGSRSTPQQPRGPRQRPT 124
R G ++P L GGP QGA PTP RG S P +P GP R
Sbjct: 87 RDIGSTESPPARTLRRGEGRGGP--------AQGARGPTPTPRG--SAPPRPPGPHLRVV 136
Query: 125 GQHRRRDGDLGLLLGGG 141
H L GGG
Sbjct: 137 AAH------LAWAAGGG 147
>gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 35.8 bits (81), Expect = 0.018
Identities = 31/94 (32%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 65 RHRGERQAPHGVALPGQRHLGGPRGGAAASAGQGANRPTPRTRGSRSTPQQPRGPRQRPT 124
R RG R+ P + G H P GGA A A + + PTP G P P P
Sbjct: 82 RRRGTRRLPPALTPAGPYHSARPGGGARARAAR-VSPPTPPRSG-----LDPAVPSPTPA 135
Query: 125 GQHRRRDGDLGLLLG-GGPVLRARRGRAGSRWLR 157
R R GL L GG + R A W R
Sbjct: 136 PLARCRQTRAGLRLSTGGRLSPPLRRAASGEWKR 169
>gi|239748840 PREDICTED: hypothetical protein XP_002346835 [Homo
sapiens]
Length = 221
Score = 35.8 bits (81), Expect = 0.018
Identities = 41/137 (29%), Positives = 52/137 (37%), Gaps = 33/137 (24%)
Query: 6 PRHIPPALVPTMPSDAKLSTRLVTFPQPLPV-VHVGSLQRFRVRDDPAGHDALKGGQVLL 64
P H+P L P D + + +FP PLP+ +H + R + G Q
Sbjct: 43 PAHVP--LSPGRLLDHPVC--IASFPHPLPLPIHPWTHHR---------GSSCSGSQ--- 86
Query: 65 RHRGERQAPHGVALPGQRHLGGPRGGAAASAGQGANRPTPRTRGSRSTPQQPRGPRQRPT 124
R G ++P L GGP QGA PTP RG S P +P GP R
Sbjct: 87 RDIGSTESPPARTLRRGEGRGGP--------AQGARGPTPTPRG--SAPPRPPGPHLRVV 136
Query: 125 GQHRRRDGDLGLLLGGG 141
H L GGG
Sbjct: 137 AAH------LAWAAGGG 147
>gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo
sapiens]
Length = 382
Score = 35.8 bits (81), Expect = 0.018
Identities = 31/94 (32%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 65 RHRGERQAPHGVALPGQRHLGGPRGGAAASAGQGANRPTPRTRGSRSTPQQPRGPRQRPT 124
R RG R+ P + G H P GGA A A + + PTP G P P P
Sbjct: 82 RRRGTRRLPPALTPAGPYHSARPGGGARARAAR-VSPPTPPRSG-----LDPAVPSPTPA 135
Query: 125 GQHRRRDGDLGLLLG-GGPVLRARRGRAGSRWLR 157
R R GL L GG + R A W R
Sbjct: 136 PLARCRQTRAGLRLSTGGRLSPPLRRAASGEWKR 169
>gi|239742867 PREDICTED: hypothetical protein XP_002342667 [Homo
sapiens]
Length = 221
Score = 35.8 bits (81), Expect = 0.018
Identities = 41/137 (29%), Positives = 52/137 (37%), Gaps = 33/137 (24%)
Query: 6 PRHIPPALVPTMPSDAKLSTRLVTFPQPLPV-VHVGSLQRFRVRDDPAGHDALKGGQVLL 64
P H+P L P D + + +FP PLP+ +H + R + G Q
Sbjct: 43 PAHVP--LSPGRLLDHPVC--IASFPHPLPLPIHPWTHHR---------GSSCSGSQ--- 86
Query: 65 RHRGERQAPHGVALPGQRHLGGPRGGAAASAGQGANRPTPRTRGSRSTPQQPRGPRQRPT 124
R G ++P L GGP QGA PTP RG S P +P GP R
Sbjct: 87 RDIGSTESPPARTLRRGEGRGGP--------AQGARGPTPTPRG--SAPPRPPGPHLRVV 136
Query: 125 GQHRRRDGDLGLLLGGG 141
H L GGG
Sbjct: 137 AAH------LAWAAGGG 147
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 35.4 bits (80), Expect = 0.023
Identities = 39/122 (31%), Positives = 48/122 (39%), Gaps = 9/122 (7%)
Query: 49 DDPAGHDALKGGQVLLRHRGERQAPHGVALPGQRHLGGPRGGAAASAGQGANRPTPRTRG 108
+ P G G L GE+ LPG GP+G GAN +G
Sbjct: 843 EGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGAN----GEKG 898
Query: 109 SRSTPQQPRGPR--QRPTGQHRRRDGDLGLLLGGGPVLRA-RRGRAGSRWLRAWKWPRAP 165
R TP +P GPR + PTG R G G+ GP + G AG R P+ P
Sbjct: 899 GRGTPGKP-GPRGQRGPTGPRGER-GPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGP 956
Query: 166 TG 167
TG
Sbjct: 957 TG 958
Score = 28.9 bits (63), Expect = 2.1
Identities = 31/111 (27%), Positives = 41/111 (36%), Gaps = 13/111 (11%)
Query: 68 GERQAPHGVALPGQRHLGGPRG---------GAAASAGQGANRPTPRTRGSRSTPQQPRG 118
GER P LPG L GP G G AG + + +++ QQ R
Sbjct: 496 GERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQARL 555
Query: 119 PRQRPTGQH--RRRDGDLGLLLGGGPVLRARRGRAGSRWLRAWKWPRAPTG 167
+ P G R G +G GG L+ G G + R + P P G
Sbjct: 556 ALRGPAGPMGLTGRPGPVGPPGSGG--LKGEPGDVGPQGPRGVQGPPGPAG 604
Score = 28.1 bits (61), Expect = 3.7
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 11/102 (10%)
Query: 67 RGERQAPHGVALPGQRHLGGPRGGAAASAGQGANRPT-PRTRGSRSTPQQPRGPRQRPTG 125
RG A + +PG+ GP G A G P P R P GP P G
Sbjct: 1092 RGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGP-AGPVG 1150
Query: 126 QHRRRDGDLGLLLGGGPVLRARRGRAGSRWLRAWKWPRAPTG 167
DGD G + G P G+ GS+ + + P PTG
Sbjct: 1151 P-PGEDGDKGEI--GEP------GQKGSKGDKGEQGPPGPTG 1183
Score = 27.7 bits (60), Expect = 4.8
Identities = 27/92 (29%), Positives = 31/92 (33%), Gaps = 7/92 (7%)
Query: 39 VGSLQRFRVRDDPAGHDALKGGQVLLRHRGERQAPHGVALPGQRHLGGPRGGAAASAGQG 98
V L + R P G G +G R P GQR GPRG G
Sbjct: 869 VPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITG 928
Query: 99 ANRPTPRTRGSRSTPQQPRGPR-----QRPTG 125
+P P+ P P G R Q PTG
Sbjct: 929 --KPGPKGNSGGDGPAGPPGERGPNGPQGPTG 958
>gi|239742474 PREDICTED: hypothetical protein [Homo sapiens]
Length = 589
Score = 35.4 bits (80), Expect = 0.023
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 80 GQRHLGGPRGGAAASAGQGANRPTPRTRGSRSTPQQPRGPRQRPTGQHRRRDGDLGLLLG 139
G+ P G + G+G R + + T + PRGPRQ T +H R +G +
Sbjct: 181 GEGSAWAPSGKYRQAHGEGGPRGPHQGSTDKHTERGPRGPRQGSTDKHTERGVRVG-AVR 239
Query: 140 GGPVLRARRGRAGS-RWLRAWKWPRAPTG 167
P R GR G+ R +R R P G
Sbjct: 240 EVPTSTQRGGRVGAVREVRTSTLERGPRG 268
Score = 28.9 bits (63), Expect = 2.1
Identities = 26/91 (28%), Positives = 32/91 (35%), Gaps = 28/91 (30%)
Query: 68 GERQAPHGVALPGQRHLG--------GPRGGAAASAGQGANR----------PTPRTRGS 109
G+ + HG P H G GPRG S + R PT RG
Sbjct: 190 GKYRQAHGEGGPRGPHQGSTDKHTERGPRGPRQGSTDKHTERGVRVGAVREVPTSTQRGG 249
Query: 110 R----------STPQQPRGPRQRPTGQHRRR 130
R + + PRGPRQ T +H R
Sbjct: 250 RVGAVREVRTSTLERGPRGPRQGSTDKHTER 280
>gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo
sapiens]
Length = 2971
Score = 35.0 bits (79), Expect = 0.030
Identities = 39/137 (28%), Positives = 48/137 (35%), Gaps = 29/137 (21%)
Query: 48 RDDPAGHDALKGGQVLLRHRGER-----QAPHGVALP----GQRHLGGPRGGAAASAGQG 98
R P G KGG GE+ Q P G A P G++ + GPRG A AG
Sbjct: 1996 RRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGA-AGAP 2054
Query: 99 ANRPTPRTRGSRSTPQQP--------RGPRQRPTGQHRRRDGDLGLLLGGGPVLRARRGR 150
R G + P +P RGPR R G G RRG+
Sbjct: 2055 GERGRTGPLGRKGEPGEPGPKGGIGNRGPRGETGDDGRDGVGSEG-----------RRGK 2103
Query: 151 AGSRWLRAWKWPRAPTG 167
G R + P+ G
Sbjct: 2104 KGERGFPGYPGPKGNPG 2120
>gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo
sapiens]
Length = 3177
Score = 35.0 bits (79), Expect = 0.030
Identities = 39/137 (28%), Positives = 48/137 (35%), Gaps = 29/137 (21%)
Query: 48 RDDPAGHDALKGGQVLLRHRGER-----QAPHGVALP----GQRHLGGPRGGAAASAGQG 98
R P G KGG GE+ Q P G A P G++ + GPRG A AG
Sbjct: 2202 RRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGA-AGAP 2260
Query: 99 ANRPTPRTRGSRSTPQQP--------RGPRQRPTGQHRRRDGDLGLLLGGGPVLRARRGR 150
R G + P +P RGPR R G G RRG+
Sbjct: 2261 GERGRTGPLGRKGEPGEPGPKGGIGNRGPRGETGDDGRDGVGSEG-----------RRGK 2309
Query: 151 AGSRWLRAWKWPRAPTG 167
G R + P+ G
Sbjct: 2310 KGERGFPGYPGPKGNPG 2326
>gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo
sapiens]
Length = 2570
Score = 35.0 bits (79), Expect = 0.030
Identities = 39/137 (28%), Positives = 48/137 (35%), Gaps = 29/137 (21%)
Query: 48 RDDPAGHDALKGGQVLLRHRGER-----QAPHGVALP----GQRHLGGPRGGAAASAGQG 98
R P G KGG GE+ Q P G A P G++ + GPRG A AG
Sbjct: 1595 RRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGA-AGAP 1653
Query: 99 ANRPTPRTRGSRSTPQQP--------RGPRQRPTGQHRRRDGDLGLLLGGGPVLRARRGR 150
R G + P +P RGPR R G G RRG+
Sbjct: 1654 GERGRTGPLGRKGEPGEPGPKGGIGNRGPRGETGDDGRDGVGSEG-----------RRGK 1702
Query: 151 AGSRWLRAWKWPRAPTG 167
G R + P+ G
Sbjct: 1703 KGERGFPGYPGPKGNPG 1719
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 35.0 bits (79), Expect = 0.030
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Query: 65 RHRGERQAPHGVAL-PGQRHLGGPRGGAAASAGQGANRPTPRTRGSRSTPQQPRGPRQRP 123
R +R P A P +R GG GG A++G+ ++P R R P PR PR P
Sbjct: 73 RENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQP----RRPRRPPPAPRRPRPAP 128
Query: 124 TGQHRRRDGDLGLLLGGGPVL-RARRGRAGSR 154
RR+ L P+L R + GR+G R
Sbjct: 129 ---GRRKS-----LYEAAPLLTREKGGRSGRR 152
Score = 28.9 bits (63), Expect = 2.1
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 82 RHLGGPRGGAAASAGQGANRPTPRTRGSRSTPQQP-RGPRQRPTG 125
R L GPR + A A RP PR R+ P + RGP +RP G
Sbjct: 51 RVLRGPRAPSPAPALPARARP-PRENRKRAVPARAARGPPKRPAG 94
>gi|239752679 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 35.0 bits (79), Expect = 0.030
Identities = 36/110 (32%), Positives = 44/110 (40%), Gaps = 9/110 (8%)
Query: 35 PVVHVGSLQRFRVRDDPAGHDALKG-GQVLLRHRGERQAPHGVALPGQRHLGGP----RG 89
P H G R R + AG + G GQ L H G R P V G RHL P
Sbjct: 109 PTGHRGGRGRGRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHS 168
Query: 90 GAAASAGQGANRPTPRTRGSRSTPQQPRGPRQRPTGQHRRRDGDLGLLLG 139
G + +G + PR + TP QP P +RP + R GL G
Sbjct: 169 GRPGAPHRGRD---PRWLSTPKTP-QPGRPGRRPRQEPELRPRAQGLTGG 214
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 35.0 bits (79), Expect = 0.030
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Query: 65 RHRGERQAPHGVAL-PGQRHLGGPRGGAAASAGQGANRPTPRTRGSRSTPQQPRGPRQRP 123
R +R P A P +R GG GG A++G+ ++P R R P PR PR P
Sbjct: 73 RENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQP----RRPRRPPPAPRRPRPAP 128
Query: 124 TGQHRRRDGDLGLLLGGGPVL-RARRGRAGSR 154
RR+ L P+L R + GR+G R
Sbjct: 129 ---GRRKS-----LYEAAPLLTREKGGRSGRR 152
Score = 28.9 bits (63), Expect = 2.1
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 82 RHLGGPRGGAAASAGQGANRPTPRTRGSRSTPQQP-RGPRQRPTG 125
R L GPR + A A RP PR R+ P + RGP +RP G
Sbjct: 51 RVLRGPRAPSPAPALPARARP-PRENRKRAVPARAARGPPKRPAG 94
>gi|239747216 PREDICTED: hypothetical protein XP_002346941 [Homo
sapiens]
Length = 245
Score = 35.0 bits (79), Expect = 0.030
Identities = 36/110 (32%), Positives = 44/110 (40%), Gaps = 9/110 (8%)
Query: 35 PVVHVGSLQRFRVRDDPAGHDALKG-GQVLLRHRGERQAPHGVALPGQRHLGGP----RG 89
P H G R R + AG + G GQ L H G R P V G RHL P
Sbjct: 109 PTGHRGGRGRGRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHS 168
Query: 90 GAAASAGQGANRPTPRTRGSRSTPQQPRGPRQRPTGQHRRRDGDLGLLLG 139
G + +G + PR + TP QP P +RP + R GL G
Sbjct: 169 GRPGAPHRGRD---PRWLSTPKTP-QPGRPGRRPRQEPELRPRAQGLTGG 214
>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 35.0 bits (79), Expect = 0.030
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Query: 65 RHRGERQAPHGVAL-PGQRHLGGPRGGAAASAGQGANRPTPRTRGSRSTPQQPRGPRQRP 123
R +R P A P +R GG GG A++G+ ++P R R P PR PR P
Sbjct: 73 RENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQP----RRPRRPPPAPRRPRPAP 128
Query: 124 TGQHRRRDGDLGLLLGGGPVL-RARRGRAGSR 154
RR+ L P+L R + GR+G R
Sbjct: 129 ---GRRKS-----LYEAAPLLTREKGGRSGRR 152
Score = 28.9 bits (63), Expect = 2.1
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 82 RHLGGPRGGAAASAGQGANRPTPRTRGSRSTPQQP-RGPRQRPTG 125
R L GPR + A A RP PR R+ P + RGP +RP G
Sbjct: 51 RVLRGPRAPSPAPALPARARP-PRENRKRAVPARAARGPPKRPAG 94
>gi|239741024 PREDICTED: hypothetical protein XP_002342070 [Homo
sapiens]
Length = 245
Score = 35.0 bits (79), Expect = 0.030
Identities = 36/110 (32%), Positives = 44/110 (40%), Gaps = 9/110 (8%)
Query: 35 PVVHVGSLQRFRVRDDPAGHDALKG-GQVLLRHRGERQAPHGVALPGQRHLGGP----RG 89
P H G R R + AG + G GQ L H G R P V G RHL P
Sbjct: 109 PTGHRGGRGRGRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHS 168
Query: 90 GAAASAGQGANRPTPRTRGSRSTPQQPRGPRQRPTGQHRRRDGDLGLLLG 139
G + +G + PR + TP QP P +RP + R GL G
Sbjct: 169 GRPGAPHRGRD---PRWLSTPKTP-QPGRPGRRPRQEPELRPRAQGLTGG 214
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.139 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,997,106
Number of Sequences: 37866
Number of extensions: 567252
Number of successful extensions: 4468
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 385
Number of HSP's that attempted gapping in prelim test: 3691
Number of HSP's gapped (non-prelim): 1098
length of query: 167
length of database: 18,247,518
effective HSP length: 95
effective length of query: 72
effective length of database: 14,650,248
effective search space: 1054817856
effective search space used: 1054817856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.