Guide to the Human Genome
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Name: LOC100291554 Sequence: fasta or formatted (221aa) NCBI GI: 239754301
Description:

PREDICTED: hypothetical protein XP_002345934

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.3         25           3
 C cysteine            1.8          4           1
 D aspartate           1.8          4           1
 E glutamate           4.1          9           1
 F phenylalanine       1.4          3           1
 G glycine            15.8         35           3
 H histidine           5.9         13           2
 I isoleucine          2.3          5           1
 K lysine              0.9          2           1
 L leucine            10.9         24           2
 M methionine          0.9          2           1
 N asparagine          0.0          0           0
 P proline            13.6         30           2
 Q glutamine           3.2          7           1
 R arginine            8.1         18           2
 S serine              6.3         14           2
 T threonine           3.2          7           1
 V valine              7.2         16           3
 W tryptophan          1.4          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345934 
LOC100290255          0.991   PREDICTED: hypothetical protein XP_002346835 
LOC100287733          0.991   PREDICTED: hypothetical protein XP_002342667 
LOC100130360          0.039   PREDICTED: hypothetical protein 
PRB1                  0.039   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRB2                  0.036   proline-rich protein BstNI subfamily 2 
COL18A1               0.036   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.036   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.036   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
TENC1                 0.034   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.034   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.034   tensin like C1 domain containing phosphatase isoform...
FMNL1                 0.034   formin-like 1 
LOC440829             0.032   PREDICTED: transmembrane protein 46-like 
LOC440829             0.032   PREDICTED: transmembrane protein 46-like 
MNT                   0.032   MAX binding protein 
SYNPO                 0.032   synaptopodin isoform A 
PPRC1                 0.032   peroxisome proliferator-activated receptor gamma, co...
WAS                   0.030   Wiskott-Aldrich syndrome protein 
CPSF6                 0.030   cleavage and polyadenylation specific factor 6, 68 ...
FLJ39639              0.030   PREDICTED: hypothetical protein FLJ39639 
FLJ39639              0.030   PREDICTED: hypothetical protein FLJ39639 
FLJ39639              0.030   PREDICTED: hypothetical protein LOC283876 
C6orf174              0.030   hypothetical protein LOC387104 
COL5A1                0.027   alpha 1 type V collagen preproprotein 
SCAF1                 0.027   SR-related CTD-associated factor 1 
MYPOP                 0.027   Myb protein P42POP 
ADAM8                 0.027   ADAM metallopeptidase domain 8 precursor 
SEC24D                0.027   Sec24-related protein D 
COL12A1               0.027   collagen, type XII, alpha 1 short isoform precursor ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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