Guide to the Human Genome
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Name: LOC100132605 Sequence: fasta or formatted (589aa) NCBI GI: 239742474
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         59           3
 C cysteine            2.7         16           2
 D aspartate           3.2         19           2
 E glutamate           5.9         35           1
 F phenylalanine       0.7          4           1
 G glycine            11.9         70           3
 H histidine           4.4         26           2
 I isoleucine          1.0          6           1
 K lysine              2.2         13           1
 L leucine             7.1         42           3
 M methionine          0.8          5           1
 N asparagine          1.2          7           1
 P proline             9.5         56           2
 Q glutamine           4.2         25           2
 R arginine           10.5         62           2
 S serine             10.0         59           2
 T threonine           5.9         35           2
 V valine              5.8         34           2
 W tryptophan          2.2         13           1
 Y tyrosine            0.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
HRNR                  0.024   hornerin 
LOC100292159          0.022   PREDICTED: hypothetical protein 
LOC100287746          0.022   PREDICTED: hypothetical protein 
LOC100287746          0.022   PREDICTED: hypothetical protein XP_002344135 
FLG                   0.022   filaggrin 
LOC100292370          0.017   PREDICTED: hypothetical protein 
C2orf16               0.017   hypothetical protein LOC84226 
PPP1R10               0.016   protein phosphatase 1, regulatory subunit 10 
CRNN                  0.016   cornulin 
FLG2                  0.014   filaggrin family member 2 
LOC100286959          0.013   PREDICTED: hypothetical protein XP_002343921 
LOC440829             0.013   PREDICTED: transmembrane protein 46-like 
ANKRD36               0.013   PREDICTED: ankyrin repeat domain 36 
LOC100289661          0.012   PREDICTED: hypothetical protein 
LOC100289661          0.012   PREDICTED: hypothetical protein XP_002343723 
LOC100293596          0.012   PREDICTED: similar to mucin 
BSN                   0.012   bassoon protein 
LOC100132015          0.012   PREDICTED: similar to testis expressed sequence 13A...
LOC100132015          0.012   PREDICTED: similar to testis expressed sequence 13A...
WDR33                 0.012   WD repeat domain 33 isoform 1 
LOC643355             0.012   PREDICTED: hypothetical protein 
LOC100132015          0.012   PREDICTED: similar to testis expressed sequence 13A...
LOC100289716          0.011   PREDICTED: hypothetical protein XP_002346898 
LOC100289602          0.011   PREDICTED: hypothetical protein XP_002342755 
LOC100289602          0.011   PREDICTED: hypothetical protein 
COL11A2               0.011   collagen, type XI, alpha 2 isoform 1 preproprotein ...
LOC100129810          0.011   PREDICTED: hypothetical protein 
LOC100129810          0.011   PREDICTED: hypothetical protein 
SCAF1                 0.011   SR-related CTD-associated factor 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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