Guide to the Human Genome
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Name: LOC100131455 Sequence: fasta or formatted (237aa) NCBI GI: 169163728
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {237aa} PREDICTED: hypothetical protein
alt mRNA {237aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.2         29           2
 C cysteine            0.8          2           1
 D aspartate           1.7          4           1
 E glutamate           4.6         11           3
 F phenylalanine       0.8          2           1
 G glycine            13.5         32           2
 H histidine           0.8          2           1
 I isoleucine          0.4          1           1
 K lysine              2.1          5           1
 L leucine             4.2         10           2
 M methionine          0.8          2           1
 N asparagine          0.8          2           1
 P proline            17.7         42           3
 Q glutamine           2.5          6           1
 R arginine           18.6         44           3
 S serine              8.4         20           2
 T threonine           4.2         10           2
 V valine              2.5          6           1
 W tryptophan          1.3          3           1
 Y tyrosine            1.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131455          1.000   PREDICTED: hypothetical protein 
LOC100131455          0.996   PREDICTED: hypothetical protein 
TAF4                  0.072   TBP-associated factor 4 
COL1A2                0.066   alpha 2 type I collagen 
SAMD1                 0.066   sterile alpha motif domain containing 1 
LOC100291634          0.063   PREDICTED: hypothetical protein XP_002346062 
LOC100287232          0.063   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.063   PREDICTED: hypothetical protein 
NACA                  0.063   nascent polypeptide-associated complex alpha subuni...
COL7A1                0.061   alpha 1 type VII collagen precursor 
ARL6IP4               0.061   SRp25 nuclear protein isoform 4 
ARL6IP4               0.061   SRp25 nuclear protein isoform 2 
COL1A1                0.059   alpha 1 type I collagen preproprotein 
COL3A1                0.057   collagen type III alpha 1 preproprotein 
BBC3                  0.057   BCL2 binding component 3 isoform 1 
PRB3                  0.057   proline-rich protein BstNI subfamily 3 precursor [H...
LOC100130360          0.057   PREDICTED: hypothetical protein 
DACT3                 0.057   thymus expressed gene 3-like 
PRB4                  0.057   proline-rich protein BstNI subfamily 4 precursor [Ho...
YBX2                  0.055   Y box binding protein 2 
PRB2                  0.055   proline-rich protein BstNI subfamily 2 
PRB1                  0.055   proline-rich protein BstNI subfamily 1 isoform 1 pre...
BAT2                  0.053   HLA-B associated transcript-2 
FLJ37078              0.053   hypothetical protein LOC222183 
GGN                   0.053   gametogenetin 
C9orf75               0.053   hypothetical protein LOC286262 isoform 2 
C9orf75               0.053   hypothetical protein LOC286262 isoform 1 
LOC100129098          0.051   PREDICTED: hypothetical protein 
LOC100287250          0.051   PREDICTED: hypothetical protein XP_002344493 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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