Guide to the Human Genome
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Name: LOC100286967 Sequence: fasta or formatted (351aa) NCBI GI: 239741603
Description:

PREDICTED: hypothetical protein XP_002342247

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         39           4
 C cysteine            1.1          4           1
 D aspartate           3.1         11           1
 E glutamate           4.3         15           2
 F phenylalanine       2.8         10           1
 G glycine             8.3         29           2
 H histidine           3.7         13           1
 I isoleucine          1.7          6           1
 K lysine              1.7          6           2
 L leucine             9.4         33           2
 M methionine          0.6          2           1
 N asparagine          1.7          6           1
 P proline            14.5         51           3
 Q glutamine           6.0         21           2
 R arginine           11.4         40           2
 S serine              9.1         32           2
 T threonine           3.4         12           2
 V valine              4.0         14           2
 W tryptophan          0.9          3           1
 Y tyrosine            1.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342247 
LOC100293168          0.039   PREDICTED: hypothetical protein 
LOC100287177          0.039   PREDICTED: hypothetical protein 
LOC100287177          0.039   PREDICTED: hypothetical protein XP_002343692 
MLL2                  0.036   myeloid/lymphoid or mixed-lineage leukemia 2 
LOC100292934          0.031   PREDICTED: hypothetical protein 
C15orf39              0.030   hypothetical protein LOC56905 
HCN2                  0.029   hyperpolarization activated cyclic nucleotide-gated...
LOC100132234          0.029   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.029   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.029   PREDICTED: hypothetical protein LOC100132234 
LOC729370             0.029   PREDICTED: hypothetical protein 
SF3B4                 0.027   splicing factor 3b, subunit 4 
NACA                  0.027   nascent polypeptide-associated complex alpha subuni...
LOC100287907          0.027   PREDICTED: hypothetical protein 
LOC100287907          0.027   PREDICTED: hypothetical protein XP_002343168 
LOC100293818          0.026   PREDICTED: hypothetical protein 
SF3A2                 0.026   splicing factor 3a, subunit 2 
SAMD1                 0.026   sterile alpha motif domain containing 1 
LOC100131455          0.024   PREDICTED: hypothetical protein 
LOC100131455          0.024   PREDICTED: hypothetical protein 
FLJ22184              0.024   PREDICTED: hypothetical protein LOC80164 
LOC100131455          0.024   PREDICTED: hypothetical protein 
FLJ37078              0.024   hypothetical protein LOC222183 
SRRM2                 0.024   splicing coactivator subunit SRm300 
IGSF9B                0.024   immunoglobulin superfamily, member 9B 
DGKK                  0.024   diacylglycerol kinase kappa 
LOC100131102          0.024   PREDICTED: hypothetical protein 
LOC100131102          0.024   PREDICTED: hypothetical protein 
BAT2                  0.023   HLA-B associated transcript-2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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