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Search of human proteins with 239741753
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]
(274 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741753 PREDICTED: hypothetical protein [Homo sapiens] 567 e-162
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 65 5e-11
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 55 5e-08
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 55 9e-08
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 54 1e-07
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 54 2e-07
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 54 2e-07
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 53 3e-07
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 52 7e-07
gi|11386183 WAS protein family, member 2 [Homo sapiens] 51 1e-06
gi|19263349 Cbp/p300-interacting transactivator, with Glu/Asp-ri... 50 2e-06
gi|33356148 formin-like 1 [Homo sapiens] 50 2e-06
gi|157412247 RUN and SH3 domain containing 1 isoform b [Homo sap... 50 2e-06
gi|157412245 RUN and SH3 domain containing 1 isoform a [Homo sap... 50 2e-06
gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens] 50 2e-06
gi|56118221 amyloid beta (A4) precursor protein-binding, family ... 50 2e-06
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 50 2e-06
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 50 3e-06
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 50 3e-06
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 50 3e-06
gi|7706501 WW domain binding protein 11 [Homo sapiens] 50 3e-06
gi|117938759 GNAS complex locus XLas [Homo sapiens] 49 4e-06
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 49 5e-06
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 49 5e-06
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 49 5e-06
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 49 5e-06
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 49 6e-06
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 49 6e-06
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 49 6e-06
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 49 6e-06
>gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 567 bits (1462), Expect = e-162
Identities = 274/274 (100%), Positives = 274/274 (100%)
Query: 1 MGGQRRLRKEGPRVGVRKREEEEEKSSLGRAAGVESRRRAGEGAAGRRDGGWGPPGGAGD 60
MGGQRRLRKEGPRVGVRKREEEEEKSSLGRAAGVESRRRAGEGAAGRRDGGWGPPGGAGD
Sbjct: 1 MGGQRRLRKEGPRVGVRKREEEEEKSSLGRAAGVESRRRAGEGAAGRRDGGWGPPGGAGD 60
Query: 61 HQTLQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPLGHGLRPRPPPGTP 120
HQTLQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPLGHGLRPRPPPGTP
Sbjct: 61 HQTLQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPLGHGLRPRPPPGTP 120
Query: 121 PPRCPRTLAPGPRGLFPAPPPAPARTGPAGKAAADRGRPGPAAGRRVRRSPSFPPFLLAQ 180
PPRCPRTLAPGPRGLFPAPPPAPARTGPAGKAAADRGRPGPAAGRRVRRSPSFPPFLLAQ
Sbjct: 121 PPRCPRTLAPGPRGLFPAPPPAPARTGPAGKAAADRGRPGPAAGRRVRRSPSFPPFLLAQ 180
Query: 181 TRLGRTGPLALCLLLLLHGAMRLGGGSREKLACGRAGRAARTGRGEGGRRAEEEAAGRRR 240
TRLGRTGPLALCLLLLLHGAMRLGGGSREKLACGRAGRAARTGRGEGGRRAEEEAAGRRR
Sbjct: 181 TRLGRTGPLALCLLLLLHGAMRLGGGSREKLACGRAGRAARTGRGEGGRRAEEEAAGRRR 240
Query: 241 RRRPGRTRGIPRAAGGLSRAGTRVLRYPSSHRRQ 274
RRRPGRTRGIPRAAGGLSRAGTRVLRYPSSHRRQ
Sbjct: 241 RRRPGRTRGIPRAAGGLSRAGTRVLRYPSSHRRQ 274
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 65.5 bits (158), Expect = 5e-11
Identities = 68/225 (30%), Positives = 82/225 (36%), Gaps = 22/225 (9%)
Query: 31 AAGVESRRRAGEGAAGRRDGG---WGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAA 87
AAG+ S A EG W P G + Q+ PG S + ER S A
Sbjct: 103 AAGMASALEALEGGGPPPPPALPTWSVPNGPSPEEVEQQKRQQPGPS--EHIERRVSNAG 160
Query: 88 RGTAPPAPPRQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGLFPAPPPAPARTG 147
APPA P P PP G P PPPG PP P A G G P PP PA G
Sbjct: 161 GPPAPPAGGPPPPPGPPPPPG----PPPPPGLPPSGVPAA-AHGAGGGPPPAPPLPAAQG 215
Query: 148 PAGKAAADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLLLLHGAMRLGGGS 207
P G A G AG ++R+ + G T P A GGG
Sbjct: 216 PGGGGAGAPGLAAAIAGAKLRKVSK-----QEEASGGPTAPKA-------ESGRSGGGGL 263
Query: 208 REKLACGRAGRAARTGRGEGGRRAEEEAAGRRRRRRPGRTRGIPR 252
E++ A R T GE + E R P ++ + R
Sbjct: 264 MEEMNAMLARRRKATQVGEKTPKDESANQEEPEARVPAQSESVRR 308
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 55.5 bits (132), Expect = 5e-08
Identities = 35/81 (43%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 81 REPSLAARGTAPPAPPR---QCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGLFP 137
R P RG PP PP + P P PP G G P PPP PPP P G P
Sbjct: 357 RGPPPPGRGGPPPPPPPATGRSGPLPPPPPGAGGPPMPPPPPPPP------PPPSSGNGP 410
Query: 138 APPPAPARTGPAGKAAADRGR 158
APPP P PAG A GR
Sbjct: 411 APPPLPPALVPAGGLAPGGGR 431
Score = 43.5 bits (101), Expect = 2e-04
Identities = 52/191 (27%), Positives = 70/191 (36%), Gaps = 27/191 (14%)
Query: 83 PSLAARGTAPPAPP----RQCLPTPCPPLGHGLRPRPP-PGTPPPRCPRTLAPGPRGLFP 137
P + G P PP + P PP+ G+ P PP P PPP PG G P
Sbjct: 317 PPPSRGGNQLPRPPIVGGNKGRSGPLPPVPLGIAPPPPTPRGPPP-------PGRGGPPP 369
Query: 138 APPPAPARTGPAGKAAADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLLLL 197
PPPA R+GP P P AG P PP + G P L L+
Sbjct: 370 PPPPATGRSGPLPP-------PPPGAGGPPMPPPPPPPPPPPSSGNG-PAPPPLPPALVP 421
Query: 198 HGAMRLGGGS-------REKLACGRAGRAARTGRGEGGRRAEEEAAGRRRRRRPGRTRGI 250
G + GGG R+ + + A + + ++ E G R+R I
Sbjct: 422 AGGLAPGGGRGALLDQIRQGIQLNKTPGAPESSALQPPPQSSEGLVGALMHVMQKRSRAI 481
Query: 251 PRAAGGLSRAG 261
+ G +AG
Sbjct: 482 HSSDEGEDQAG 492
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 54.7 bits (130), Expect = 9e-08
Identities = 67/226 (29%), Positives = 79/226 (34%), Gaps = 44/226 (19%)
Query: 39 RAGEGAAGRRDGGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQ 98
R GA G DG GPPGG G+ + G + + EP L G P +
Sbjct: 1257 RGPSGAPGA-DGPQGPPGGIGNPGAV-------GEKGEPGEAGEPGLPGEGGPPGPKGER 1308
Query: 99 CLPTPCPPLGHGLRPRP--PPGTPPPRCPRTLAPGPRGLFPAPPPAPARTGPAGKAA--- 153
P G P P PPG P+ +PGP G FP P P GPAG+
Sbjct: 1309 GEKGESGPSGAAGPPGPKGPPGDDGPKG----SPGPVG-FPGDPGPPGEPGPAGQDGPPG 1363
Query: 154 --ADRGRPGP--AAGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLLLLHGAMRLGGGSRE 209
D G PG + G PS PP G+ GP G G E
Sbjct: 1364 DKGDDGEPGQTGSPGPTGEPGPSGPP--------GKRGP---------PGPAGPEGRQGE 1406
Query: 210 KLACGRAGRAARTGRGEGGRRAEEEAAGRRRRRRPGRTRGIPRAAG 255
K A G AG G G+ G + P RGIP G
Sbjct: 1407 KGAKGEAGL-----EGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVG 1447
Score = 46.6 bits (109), Expect = 2e-05
Identities = 53/172 (30%), Positives = 63/172 (36%), Gaps = 31/172 (18%)
Query: 28 LGRAAGVESRRRAGEGAAGRRDGGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAA 87
+G V + GE G GPPG P G + E PS AA
Sbjct: 1275 IGNPGAVGEKGEPGEAGEPGLPGEGGPPG--------------PKGERGEKGESGPSGAA 1320
Query: 88 RGTAPPAPPRQCLPTPCP-PLGHGLRPRPP--PGT-----PPPRCPRTLAPGPRGLFPAP 139
P PP P P P+G P PP PG PP PG G P P
Sbjct: 1321 GPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTG-SPGP 1379
Query: 140 PPAPARTGPAGKAAADRGRPGPAA--GRRVRRSPSFPPFLLAQTRLGRTGPL 189
P +GP GK RG PGPA GR+ + L + G+TGP+
Sbjct: 1380 TGEPGPSGPPGK----RGPPGPAGPEGRQGEKGAKGEAGL--EGPPGKTGPI 1425
Score = 42.4 bits (98), Expect = 4e-04
Identities = 58/208 (27%), Positives = 73/208 (35%), Gaps = 21/208 (10%)
Query: 55 PGGAGDHQTLQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPLGHGLRPR 114
PG + T+ + G +K Q+ EP++ G PP P P + P
Sbjct: 432 PGMPANQDTIYEG--IGGPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAGLPGPPGTMGPT 489
Query: 115 PPPGTPPPRCP--RTLAPGPRGLFPAPPPA----PARTGPAGKAAADRGRPGPAAGRRVR 168
G P R P R PG GL P PP P R G G D G GP +
Sbjct: 490 GQVGDPGERGPPGRPGLPGADGL-PGPPGTMLMLPFRFGGGG----DAGSKGPMVSAQES 544
Query: 169 RSPSFPPFLLAQTRLGRTGPLALCLLLLLHGAMRLGGGSREKLACGRAGRAARTG-RGEG 227
++ + +L Q RL GP L G + G K G G G RG
Sbjct: 545 QAQA----ILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLK---GEPGDVGPQGPRGVQ 597
Query: 228 GRRAEEEAAGRRRRRRPGRTRGIPRAAG 255
G GRR R RG+P G
Sbjct: 598 GPPGPAGKPGRRGRAGSDGARGMPGQTG 625
Score = 35.0 bits (79), Expect = 0.071
Identities = 43/135 (31%), Positives = 49/135 (36%), Gaps = 27/135 (20%)
Query: 50 GGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQCLPT-----PC 104
G GPPG GD + G DK ++ P T P P Q P+ P
Sbjct: 1147 GPVGPPGEDGDKGEIGEPGQ-KGSKGDKGEQGPPG----PTGPQGPIGQPGPSGADGEPG 1201
Query: 105 PPLGHGL-------RPRPPPGTPPPRCPRTLAPGPRGLFP--------APPPAPARTGPA 149
P GL PR PG P P + L PGP G PP P GP+
Sbjct: 1202 PRGQQGLFGQKGDEGPRGFPGPPGPVGLQGL-PGPPGEKGETGDVGQMGPPGPPGPRGPS 1260
Query: 150 GKAAADRGRPGPAAG 164
G AD G GP G
Sbjct: 1261 GAPGAD-GPQGPPGG 1274
Score = 34.3 bits (77), Expect = 0.12
Identities = 62/237 (26%), Positives = 75/237 (31%), Gaps = 29/237 (12%)
Query: 41 GEGAAGRRDGGWGPPGGAGDHQTLQRASLL-----PGGSADKDQEREPSLAARGTAPPAP 95
GE + G GPPG G + PG ++ P LA + P
Sbjct: 982 GETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDP 1041
Query: 96 PRQCLPTPCPPLGHGLRPRPPP-GTPPPRCPRTLA-----PGPRGLFPAPPPAPARTGPA 149
LP P GLR P G P P L PGP P P +P GPA
Sbjct: 1042 GPAGLPGKDGP--PGLRGFPGDRGLPGPVGALGLKGNEGPPGP----PGPAGSPGERGPA 1095
Query: 150 GKAA--ADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLLLLHGAMRLGGGS 207
G A GRPGP P Q GR G L G + L G +
Sbjct: 1096 GAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDG---------LQGPVGLPGPA 1146
Query: 208 REKLACGRAGRAARTGR-GEGGRRAEEEAAGRRRRRRPGRTRGIPRAAGGLSRAGTR 263
G G G G+ G + ++ G P G P +G G R
Sbjct: 1147 GPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPR 1203
Score = 29.3 bits (64), Expect = 3.9
Identities = 38/129 (29%), Positives = 45/129 (34%), Gaps = 27/129 (20%)
Query: 50 GGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPLGH 109
G GPPG G L G S K ++ P L PP +
Sbjct: 1462 GPMGPPGLPG----------LKGDSGPKGEKGHPGLIGL-IGPPGEQGE----------K 1500
Query: 110 GLRPRP-PPGTPPPRCPRTLAPGPRGLF--PAPPPAPARTGPAGKAAADRGRPGPAAGRR 166
G R P P G+ P+ + + GP G P PP P GP G A G GP G
Sbjct: 1501 GDRGLPGPQGSSGPKGEQGIT-GPSGPIGPPGPPGLPGPPGPKG-AKGSSGPTGP-KGEA 1557
Query: 167 VRRSPSFPP 175
P PP
Sbjct: 1558 GHPGPPGPP 1566
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 54.3 bits (129), Expect = 1e-07
Identities = 84/281 (29%), Positives = 100/281 (35%), Gaps = 57/281 (20%)
Query: 11 GPRVGVRKREEEE-EKSSLGRAAGVESRRRAGEGAAGRRDGGWGPPGGAGDH----QTLQ 65
GP VG R R+ E EK G +AGE G GP G GD + +
Sbjct: 1625 GP-VGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDGR 1683
Query: 66 RASLLPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPLGHGLRPRPPPGTPPPRCP 125
S PG S K EP PP PP + + T G G R + PG P
Sbjct: 1684 NGS--PGSSGPKGDRGEPG-------PPGPPGRLVDT-----GPGAREKGEPGDRGQEGP 1729
Query: 126 RTL--------APGPRGLF-----PAPPPAPARTGPAGKAAADRGRPGPAA-----GRRV 167
R APG RG+ P P P GPAG+ DRG PG G+
Sbjct: 1730 RGPKGDPGLPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKG-DRGPPGLDGRSGLDGKPG 1788
Query: 168 RRSPSFPPFLLAQTRLGRTGPLALCLLLLLHGAMRLGGGSREKLACGRAGRAARTGR--- 224
PS P G+ G L L G L G S G+ G + G
Sbjct: 1789 AAGPSGP-----NGAAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGKPGEDGKPGLNGK 1843
Query: 225 -------GEGGRRAEE---EAAGRRRRRRPGRTRGIPRAAG 255
GE GR+ E+ A+GR R P RG P G
Sbjct: 1844 NGEPGDPGEDGRKGEKGDSGASGREGRDGPKGERGAPGILG 1884
Score = 49.7 bits (117), Expect = 3e-06
Identities = 69/245 (28%), Positives = 80/245 (32%), Gaps = 57/245 (23%)
Query: 41 GEGAAGRRDGGWGPPGGAGDHQT-----LQRASLLPGGSAD---------KDQEREPSLA 86
GE DG G PG AG+ T L+ + LPG D K + P
Sbjct: 1296 GERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQV 1355
Query: 87 ARGTAPPAPPRQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGLFPAPPPAPART 146
G P P R+ P P P G PR P G P PR GP GL P A
Sbjct: 1356 IGGEGPGLPGRKGDPGPSGPPG----PRGPLGDPGPR-------GPPGL-----PGTAMK 1399
Query: 147 GPAGKAAADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLLLLHGAMRLGGG 206
G G +RG PGP G P P + G GP + G
Sbjct: 1400 GDKGDRG-ERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGP----------PGKKGEKG 1448
Query: 207 SREKLACGRAGRAARTG----------------RGEGGRRAEEEAAGRRRRRRPGRTRGI 250
E A G G+ G RG G E G R P +RG+
Sbjct: 1449 DSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGL 1508
Query: 251 PRAAG 255
P AG
Sbjct: 1509 PGVAG 1513
Score = 39.7 bits (91), Expect = 0.003
Identities = 62/227 (27%), Positives = 80/227 (35%), Gaps = 32/227 (14%)
Query: 41 GEGAAGRRDGGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAA-RGTAPPAPPRQC 99
G G +G + GPPG L+ A PG + D+ + + + +G PR
Sbjct: 2100 GPGLSGEQ----GPPG-------LKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQ 2148
Query: 100 LPTPCPPLGHGLR-PRPPPGTPPPRCPRTLAPGPRGLF--PAPPPAPARTGPAGKAAAD- 155
P P G+ P PG PR P PGP G P PP AP GPAG
Sbjct: 2149 DGNPGLPGERGMAGPEGKPGLQGPRGP----PGPVGGHGDPGPPGAPGLAGPAGPQGPSG 2204
Query: 156 -RGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLLLLHGAMRLGGGSREKLACG 214
+G PG P +G GP L+ G+ L G E G
Sbjct: 2205 LKGEPG-------ETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGE---TG 2254
Query: 215 RAGRAARTG-RGEGGRRAEEEAAGRRRRRRPGRTRGIPRAAGGLSRA 260
+ G R G G+ G R G P +G P G +A
Sbjct: 2255 KPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQA 2301
Score = 38.9 bits (89), Expect = 0.005
Identities = 70/257 (27%), Positives = 83/257 (32%), Gaps = 55/257 (21%)
Query: 39 RAGEGAAGRRDGGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAARGT-APPAPP- 96
R +G AGR G PG G+ G K + +P + G+ PP PP
Sbjct: 2338 RGEKGEAGRA----GEPGDPGEDGQ-------KGAPGPKGFKGDPGVGVPGSPGPPGPPG 2386
Query: 97 -RQCLPTPCPPLGHGL-------RPRPPPGTPPPRCPRTLA--------PGPRGLFPAPP 140
+ L P P G+ PR G P P R LA PGP G PP
Sbjct: 2387 VKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGREGIPGPLG----PP 2442
Query: 141 PAPARTGPAGKAA--ADRGRPGPA-AGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLLLL 197
P GP G + D+G PG G R R P R G+ GP L
Sbjct: 2443 GPPGSVGPPGASGLKGDKGDPGVGLPGPRGERGE--PGIRGEDGRPGQEGPRGLT----- 2495
Query: 198 HGAMRLGGGSREKLACGRAGRAARTG-----------RGEGGRRAEEEAAGRRRRRRPGR 246
G G EK G AG G RG G E G + P
Sbjct: 2496 -GPPGSRGERGEKGDVGSAGLKGDKGDSAVILGPPGPRGAKGDMGERGPRGLDGDKGPRG 2554
Query: 247 TRGIPRAAGGLSRAGTR 263
G P G G +
Sbjct: 2555 DNGDPGDKGSKGEPGDK 2571
Score = 37.0 bits (84), Expect = 0.019
Identities = 65/240 (27%), Positives = 75/240 (31%), Gaps = 41/240 (17%)
Query: 48 RDGGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPL 107
R G G PG GD + A P G P A PP LP P
Sbjct: 1529 RQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGLVLPGDPGPK 1588
Query: 108 GH-------GLRPRP-PPGTPPPRCPRTLAPGPRGLFPAPPPAPARTGPAGK-------- 151
G GL R PPG P PG +G P P P GP G+
Sbjct: 1589 GDPGDRGPIGLTGRAGPPGDSGP-------PGEKG-DPGRPGPPGPVGPRGRDGEVGEKG 1640
Query: 152 ---AAADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLLLLHGAMRLGGGSR 208
D G PG A R +R +P + + G G G G S
Sbjct: 1641 DEGPPGDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGE---------DGRNGSPGSSG 1691
Query: 209 EKLACGRAGRAARTGR----GEGGR-RAEEEAAGRRRRRRPGRTRGIPRAAGGLSRAGTR 263
K G G GR G G R + E G+ R P G+P A G G R
Sbjct: 1692 PKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFR 1751
Score = 34.7 bits (78), Expect = 0.092
Identities = 28/70 (40%), Positives = 31/70 (44%), Gaps = 15/70 (21%)
Query: 101 PTPCP---PLGH-------GLRPRPPPGTPPPRCPRTLAPGPRGLFPAPPPAPARTGPAG 150
P PCP P G GLR + P P RT APGP+G PP + G G
Sbjct: 1244 PEPCPVYCPKGQKGEPGEMGLRGQVGPPGDPGLPGRTGAPGPQG----PPGSATAKGERG 1299
Query: 151 KAAADRGRPG 160
AD GRPG
Sbjct: 1300 FPGAD-GRPG 1308
Score = 34.7 bits (78), Expect = 0.092
Identities = 40/128 (31%), Positives = 51/128 (39%), Gaps = 21/128 (16%)
Query: 41 GEGAAGRRDGGWGPPGGAG-DHQTLQRASLLPGGSADKDQEREPSLAARGTAP-PAPPRQ 98
G+ A ++G GP G G D Q PG D+ ++ E G P P+
Sbjct: 2668 GQSGAPGKEGLIGPKGDRGFDGQ--------PGPKGDQGEKGERGTPGIGGFPGPSGNDG 2719
Query: 99 CLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGL-FPAPPPAPARTGPAGKAAADRG 157
P PP G PR P G + R PG R + P P AP G ++G
Sbjct: 2720 SAGPPGPPGSVG--PRGPEGLQGQKGERG-PPGERVVGAPGVPGAPGERG-------EQG 2769
Query: 158 RPGPAAGR 165
RPGPA R
Sbjct: 2770 RPGPAGPR 2777
Score = 32.7 bits (73), Expect = 0.35
Identities = 41/131 (31%), Positives = 46/131 (35%), Gaps = 27/131 (20%)
Query: 131 GPRGLFPAPPPAPARTGPAGKAA-----ADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGR 185
GP+G P P + GP G DRG PGP PP L LG
Sbjct: 1979 GPKGDSGEQGP-PGKEGPIGFPGERGLKGDRGDPGPQG----------PPGLA----LGE 2023
Query: 186 TGPLALCLLLLLHGAMRLGGGSREKLACGRAGRAARTGR-GEGGRRAEEEAAGRRRRRRP 244
GP L G + G GRAG GR GE G R E+ G + R P
Sbjct: 2024 RGPPGPSGLAGEPGKPGIPG------LPGRAGGVGEAGRPGERGERGEKGERGEQGRDGP 2077
Query: 245 GRTRGIPRAAG 255
G P G
Sbjct: 2078 PGLPGTPGPPG 2088
Score = 28.5 bits (62), Expect = 6.6
Identities = 28/69 (40%), Positives = 31/69 (44%), Gaps = 18/69 (26%)
Query: 112 RPRPPPGTPPPRCPRTLA--PGPRGLF-----PAPPPAPARTG------PAGKAAA--DR 156
+PRP P P CP+ PG GL P P P RTG P G A A +R
Sbjct: 1241 QPRPEPC--PVYCPKGQKGEPGEMGLRGQVGPPGDPGLPGRTGAPGPQGPPGSATAKGER 1298
Query: 157 GRPGPAAGR 165
G PG A GR
Sbjct: 1299 GFPG-ADGR 1306
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 53.5 bits (127), Expect = 2e-07
Identities = 46/144 (31%), Positives = 55/144 (38%), Gaps = 22/144 (15%)
Query: 37 RRRAGEGAAGRRDGGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAARGTAPPAPP 96
R R G G R GG G GG D ++ P +Q R P G + P PP
Sbjct: 7 RSRGGGGGGFHRRGGGGGRGGLHDFRS-------PPPGMGLNQNRGPMGPGPGQSGPKPP 59
Query: 97 RQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGLFPAP-----PPAPARTGPAGK 151
+P P P H + +PPP PPP+ P P P P P PP P +
Sbjct: 60 ---IPPPPP---HQQQQQPPPQQPPPQQPPPHQPPPH---PQPHQQQQPPPPPQDSSKPV 110
Query: 152 AAADRGRPGPAAGRRVRRSPSFPP 175
A G P P G S S PP
Sbjct: 111 VAQGPG-PAPGVGSAPPASSSAPP 133
Score = 44.7 bits (104), Expect = 9e-05
Identities = 34/90 (37%), Positives = 38/90 (42%), Gaps = 16/90 (17%)
Query: 87 ARGTAPPAPPRQCLPTPCPPLGHGLRPRP---------PPGTPPPRCPRTLAP--GPRGL 135
A +APPA P PT P G G P P PPG PPP P + P P+
Sbjct: 127 ASSSAPPATP----PTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAG 182
Query: 136 FPAPPPAPARTGPAGKAAADRGRPGPAAGR 165
P PPPA A GP G GP G+
Sbjct: 183 GPPPPPA-AVPGPGPGPKQGPGPGGPKGGK 211
Score = 39.7 bits (91), Expect = 0.003
Identities = 32/114 (28%), Positives = 37/114 (32%), Gaps = 5/114 (4%)
Query: 51 GWGPPGGAGDHQTLQRASLLPGGSADKDQEREP---SLAARGTAPPAPPRQCLPTPCPPL 107
G PP + S P GS P + A G PP PP +PT P
Sbjct: 122 GSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQA 181
Query: 108 GHGLRPRPPPGTPPPRCPRTLAPGPRGLFPAPPPAPARTGPAGKAAADRGRPGP 161
G P PP P P PGP G P + G + G P P
Sbjct: 182 GGP--PPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKP 233
Score = 37.7 bits (86), Expect = 0.011
Identities = 67/278 (24%), Positives = 84/278 (30%), Gaps = 62/278 (22%)
Query: 27 SLGRAAGVESRRRAGEGAAGRRDGGWGPPG----------GAGDHQTLQRASLLPGGSAD 76
S G G RR G G G D PPG G G Q+ + + P
Sbjct: 8 SRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPIPPPPPHQ 67
Query: 77 KDQEREPSLAARGTAPP---------------APPRQCLPTPCPPLGHGLRPRPPPGTPP 121
+ Q+ P PP PP Q P G G P P G+ P
Sbjct: 68 QQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPG--PAPGVGSAP 125
Query: 122 PRCPRTLAPGPRGLFPAPPPAPARTG-PAGKAAADRGRPGPAAGRRVRRSPSFPPFLLAQ 180
P APP P +G P G P PA P PP
Sbjct: 126 PASS-----------SAPPATPPTSGAPPGSGPGPTPTPPPAV---TSAPPGAPPPTPPS 171
Query: 181 TRLGRTGPLALCLLLLLHGAMRLGGGSREKLACGRAGRAARTGRGEGGRRAEEEAAGRRR 240
+ + T P A GG A G + G G GG + + G +
Sbjct: 172 SGVPTTPPQA-------------GGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKP 218
Query: 241 RRRPG-RTRG----IPRAAGGLSRAGTRVLRYPSSHRR 273
PG T G P GG R G + +P H++
Sbjct: 219 GGGPGLSTPGGHPKPPHRGGGEPRGGRQ--HHPPYHQQ 254
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 53.5 bits (127), Expect = 2e-07
Identities = 49/173 (28%), Positives = 67/173 (38%), Gaps = 32/173 (18%)
Query: 18 KREEEEEKSSLGRAAGVESRR----RAGEGAAGRRDGGWGPPGGAGDHQTLQRASLLPGG 73
+R+ ++ S G ++ E R G GRR H + AS P
Sbjct: 486 RRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRR----------HSPSRSASPSP-- 533
Query: 74 SADKDQEREPSLAARGTAPPAPP---RQCLPTPCPPLGHGLRPRPPPG----TPPPR--- 123
+ +++E S R P+PP R+ P+P PP P PPP +PPPR
Sbjct: 534 ---RKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRS 590
Query: 124 -CPRTLAPGPRGLFPAPPPAPARTGPAGKAAADRGRPGPAAGRRVRRSPSFPP 175
PR +P + + PP RT R P P RRV SP PP
Sbjct: 591 PSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSP--PP 641
Score = 50.8 bits (120), Expect = 1e-06
Identities = 51/185 (27%), Positives = 74/185 (40%), Gaps = 28/185 (15%)
Query: 5 RRLRKEGPRVGVRKREEEEEKSSLGRAAGVESRRRAGEGAA-GRRDGGWGPPGGAGDHQT 63
+R + VG R+R S R+A R+R E + GRR PP T
Sbjct: 508 KRSHVKNGEVGRRRRH------SPSRSASPSPRKRQKETSPRGRRRRSPSPP------PT 555
Query: 64 LQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQCLPTP---CPPLGHGLRPRPPPGT- 119
+R S P + + R P+ R P PPR+ P+P PP+ P PPP
Sbjct: 556 RRRRS--PSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRR 613
Query: 120 -----PPPRCPRTLAPGPRGLFPAPPPAPARTGPAGK----AAADRGRPGPAAGRRVRRS 170
PPP+ + +P P+ PP R+ P K + + + R G + R R +
Sbjct: 614 TASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREA 673
Query: 171 PSFPP 175
S P
Sbjct: 674 RSPQP 678
Score = 46.2 bits (108), Expect = 3e-05
Identities = 51/181 (28%), Positives = 66/181 (36%), Gaps = 30/181 (16%)
Query: 16 VRKREEEEEKSSLGRAAGVESRRRAGEGAAGRRDGGWGPPGGAGDHQTLQRASLLPGGSA 75
V E EE+K AA +RR + G + D + + S + G
Sbjct: 460 VELSESEEDKGGKMAAADSVQQRRQYRRQNQQSSSDSGSSSSSEDERP--KRSHVKNGEV 517
Query: 76 DKDQEREPSLAARGT-------APPAPPRQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTL 128
+ + PS +A + P R+ P+P P R R P PPPR RT
Sbjct: 518 GRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTR----RRRSPSPAPPPRRRRTP 573
Query: 129 APGPRGLFPAPP-----PAPARTGPAGKAAADRGRPGPAAGRRV---------RRSPSFP 174
P PR P+PP P+P R P R P P RR R SPS P
Sbjct: 574 TPPPRRRTPSPPPRRRSPSPRRYSP---PIQRRYSPSPPPKRRTASPPPPPKRRASPSPP 630
Query: 175 P 175
P
Sbjct: 631 P 631
Score = 37.0 bits (84), Expect = 0.019
Identities = 41/156 (26%), Positives = 57/156 (36%), Gaps = 26/156 (16%)
Query: 37 RRRAGEGAAGRRDGGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAARGTAPPAPP 96
+RRA +R PP +R S P S+ + PS + R P P
Sbjct: 622 KRRASPSPPPKRRVSHSPPPKQRSSPVTKRRS--PSLSSKHRKGSSPSRSTREARSPQPN 679
Query: 97 RQCLPTPCP----------PLGHGL------RPRPPPGTPP-PRCPRTLAPGPRGLFPAP 139
++ P+P P P+ G R P P T P R RT P P+ + A
Sbjct: 680 KRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRRVSRT--PEPKKIKKAA 737
Query: 140 PPAPARTGPAGKAAADRGRPGPAAGRRVRRSPSFPP 175
P+P + + G P PAA + P PP
Sbjct: 738 SPSPQSVRRVSSSRSVSGSPEPAA-----KKPPAPP 768
Score = 32.0 bits (71), Expect = 0.60
Identities = 48/191 (25%), Positives = 72/191 (37%), Gaps = 30/191 (15%)
Query: 70 LPGGSADKDQEREPSLAA----RGTAPPAPPRQCLPTPCPPLGHGLRPRP-PPGTPPPRC 124
L G S+ R S R ++PP R+ P+ PP R RP PP TPPP+
Sbjct: 355 LSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRR---RHRPSPPATPPPKT 411
Query: 125 PRTLAP--GPRGLFPAPPPAPARTGPAGKAAADRGRPGPAAGRRVRRSPSFPP----FLL 178
+ P R +P RT +GK + G R SPS P L
Sbjct: 412 RHSPTPQQSNRTRKSRVSVSPGRT--SGKVTKHK-------GTEKRESPSPAPKPRKVEL 462
Query: 179 AQTRLGRTGPLALCLLLLLHGAMRLGGGSREKLACGRAGRAARTGRGEGGRRA--EEEAA 236
+++ + G +A + R R+ ++ + E +R+ +
Sbjct: 463 SESEEDKGGKMAAADSVQQRRQYR-----RQNQQSSSDSGSSSSSEDERPKRSHVKNGEV 517
Query: 237 GRRRRRRPGRT 247
GRRRR P R+
Sbjct: 518 GRRRRHSPSRS 528
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 52.8 bits (125), Expect = 3e-07
Identities = 68/241 (28%), Positives = 86/241 (35%), Gaps = 31/241 (12%)
Query: 38 RRAGEGAAGRRDGGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAARGT----APP 93
++ +GA+G D G PPG G +PG ++ P ++ G PP
Sbjct: 1185 QKGTKGASGLHDVG--PPGPVG----------IPGLKGERGDPGSPGISPPGPRGKKGPP 1232
Query: 94 APPRQCLPT-PCPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGLFPAPPPAPARTGPAGKA 152
PP P P G + P PG P + P GPRG P PP P
Sbjct: 1233 GPPGSSGPPGPAGATGRAPKDIPDPGPPGDQGPPG-PDGPRGA-PGPPGLPGSVDLLRGE 1290
Query: 153 AADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLLLLHGAMRLGGGSREKLA 212
D G PGP P + F + G+ GP+ HG G EK
Sbjct: 1291 PGDCGLPGPPGPPGPPGPPGYKGFPGCDGKDGQKGPVGFPGPQGPHG---FPGPPGEKGL 1347
Query: 213 CGRAGRAARTG----RGEGGRRAEEEAAGRRRRRRPGRTRGIPRAAGGLSRAGTRVLRYP 268
G GR TG RGE G A+ + R PG G P G G +R P
Sbjct: 1348 PGPPGRKGPTGLPGPRGEPGPPADVDDC----PRIPG-LPGAPGMRGPEGAMGLPGMRGP 1402
Query: 269 S 269
S
Sbjct: 1403 S 1403
Score = 37.4 bits (85), Expect = 0.014
Identities = 38/116 (32%), Positives = 47/116 (40%), Gaps = 20/116 (17%)
Query: 83 PSLAARGT-APPAPPRQCLPTPCP-PLG----HGLR-PRPPPGTPPPRCPRTLAPGPRGL 135
P +RG PP P P P P+G G+R R PPG + + GP G+
Sbjct: 59 PEKGSRGPPGPPGPQGPIGPLGAPGPIGLSGEKGMRGDRGPPGAAGDKGDK----GPTGV 114
Query: 136 --FPAPPPAPARTGPAGKAAADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTGPL 189
FP P GP G RG+PG + R P FP + LG GPL
Sbjct: 115 PGFPGLDGIPGHPGPPGP----RGKPGMSGHNGSRGDPGFPG---GRGALGPGGPL 163
Score = 37.4 bits (85), Expect = 0.014
Identities = 50/191 (26%), Positives = 61/191 (31%), Gaps = 65/191 (34%)
Query: 50 GGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCP---- 105
G GPPG +G + G K + +P A PP P + CP
Sbjct: 1054 GSPGPPGFSG----------IDGARGPKGNKGDP---ASHFGPPGPKGEPGSPGCPGHFG 1100
Query: 106 ------------PLGHGLRPRPPPGTPPPRCPRTLA-------------PGPRGL--FPA 138
P G RP PP + PP CP PGPRGL P
Sbjct: 1101 ASGEQGLPGIQGPRGSPGRPGPPGSSGPPGCPGDHGMPGLRGQPGEMGDPGPRGLQGDPG 1160
Query: 139 PPPAPARTGPAG----------------KAAA---DRGRPGPAA--GRRVRRSPSFPPFL 177
P P GP+G K A+ D G PGP G + R P +
Sbjct: 1161 IPGPPGIKGPSGSPGLNGLHGLKGQKGTKGASGLHDVGPPGPVGIPGLKGERGDPGSPGI 1220
Query: 178 LAQTRLGRTGP 188
G+ GP
Sbjct: 1221 SPPGPRGKKGP 1231
Score = 35.8 bits (81), Expect = 0.041
Identities = 45/137 (32%), Positives = 51/137 (37%), Gaps = 34/137 (24%)
Query: 42 EGAAGRRDGGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQCLP 101
EG AG G GPPG H + A +PG +P L +P AP + P
Sbjct: 812 EGHAGF-PGVPGPPG----HSCERGAPGIPG---------QPGLPGYPGSPGAPGGKGQP 857
Query: 102 TPCPPLGHGLRPRPPPGTP--PPRCPRTLAPGPRGLFPAPPPAPARTGPAGKAAADRGRP 159
P G P G P P R PG G PP P GP G D G P
Sbjct: 858 GDVGPPG----PAGMKGLPGLPGR------PGAHG----PPGLPGIPGPFG----DDGLP 899
Query: 160 GPAAGRRVRRSPSFPPF 176
GP + R P FP F
Sbjct: 900 GPPGPKGPRGLPGFPGF 916
Score = 35.0 bits (79), Expect = 0.071
Identities = 42/131 (32%), Positives = 46/131 (35%), Gaps = 19/131 (14%)
Query: 50 GGWGPPGGAGDHQTLQRASLLPGGSADK-DQEREPSLAARGT-APPAPPRQCLPTPCPPL 107
G GPPG G H AS PG K D +G P PP P P
Sbjct: 533 GAEGPPGLPGKHG----ASGPPGNKGAKGDMVVSRVKGHKGERGPDGPPG----FPGQPG 584
Query: 108 GHG----LRPRPPPGTPPPRCPRTLAPGPRGLFPAPPPAPARTGPAGKAAADRGRPGPAA 163
HG + PG PP PG +G FP P P + GP G G PGP
Sbjct: 585 SHGRDGHAGEKGDPG--PPGDHEDATPGGKG-FPGPLGPPGKAGPVGPPGL--GFPGPPG 639
Query: 164 GRRVRRSPSFP 174
R P P
Sbjct: 640 ERGHPGVPGHP 650
Score = 33.1 bits (74), Expect = 0.27
Identities = 40/152 (26%), Positives = 54/152 (35%), Gaps = 14/152 (9%)
Query: 50 GGWGPPGGAGDHQTLQRASL--LPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPL 107
G G PG G+ + L L G D P PP P + P P
Sbjct: 317 GSPGFPGLKGELGLVGDPGLFGLIGPKGDPGNRGHPGPPGVLVTPPLPLKGPPGDPGFPG 376
Query: 108 GHG----LRPRPPPGT---PPPRCPRTLAP-GPRGLFPAPPPAPARTGPAGKAAADRGRP 159
+G + P PPG P C + P GP+G FP P P G G+ + G+P
Sbjct: 377 RYGETGDVGPPGPPGLLGRPGEACAGMIGPPGPQG-FPGLPGLPGEAGIPGRPDSAPGKP 435
Query: 160 GPAAGRRVRRSP---SFPPFLLAQTRLGRTGP 188
G + +P P + +G GP
Sbjct: 436 GKPGSPGLPGAPGLQGLPGSSVIYCSVGNPGP 467
Score = 29.3 bits (64), Expect = 3.9
Identities = 47/178 (26%), Positives = 61/178 (34%), Gaps = 56/178 (31%)
Query: 32 AGVESRRRAGEGAAGRRDGGWGPPGGAGDHQTLQRASLL------------------PGG 73
AG+ R + G G+ G G PG G Q L +S++ PGG
Sbjct: 422 AGIPGRPDSAPGKPGK-PGSPGLPGAPG-LQGLPGSSVIYCSVGNPGPQGIKGKVGPPGG 479
Query: 74 SADKDQEREPSLAARGTAPPAPPRQCLPTPCPPLGHGLRPRPPPGTPPPR-------CPR 126
K ++ L A C P P P G PPG P + P
Sbjct: 480 RGPKGEKGNEGLCA-----------CEPGPMGPPG-------PPGLPGRQGSKGDLGLPG 521
Query: 127 TLA----PGPRGLFPAPPPAPARTGPAGKAAADRGRPGPAAGRRVR-----RSPSFPP 175
L PGP G PP P + G +G ++G G RV+ R P PP
Sbjct: 522 WLGTKGDPGPPGA-EGPPGLPGKHGASG-PPGNKGAKGDMVVSRVKGHKGERGPDGPP 577
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 51.6 bits (122), Expect = 7e-07
Identities = 53/161 (32%), Positives = 57/161 (35%), Gaps = 44/161 (27%)
Query: 40 AGEGAAGRRDGGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQC 99
AGE G G PG G PGG D+ + P AP AP
Sbjct: 1007 AGEPGRDGNPGSDGLPGRDGS----------PGGKGDRGENGSPG------APGAPGHPG 1050
Query: 100 LPTPCPPLGHG-----LRPRPPPGTPPPRCPRTLAPGPRGL------------------- 135
P P P G P P G P P R APGP+G
Sbjct: 1051 PPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRG-APGPQGPRGDKGETGERGAAGIKGHR 1109
Query: 136 -FPAPPPAPARTGPAGKAAADRGRPGPAAGRRVRRSPSFPP 175
FP P AP GPAG+ A G PGP AG R PS PP
Sbjct: 1110 GFPGNPGAPGSPGPAGQQGA-IGSPGP-AGPRGPVGPSGPP 1148
Score = 50.1 bits (118), Expect = 2e-06
Identities = 63/217 (29%), Positives = 80/217 (36%), Gaps = 26/217 (11%)
Query: 39 RAGEGAAGRRDGGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQ 98
+ +GA G+ +G G PGG G P G K+ E P +G P P
Sbjct: 584 KGNDGAPGK-NGERGGPGGPG-----------PQGPPGKNGETGP----QGPPGPTGPGG 627
Query: 99 CLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGLFPAPPPAPARTGPAGKAAADRGR 158
PP GL+ P G PP + PGP+G A P AP G AG A +RG
Sbjct: 628 DKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGA-PGAPGGKGDAG-APGERGP 685
Query: 159 PGPAAGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLLLLHGAMRLGGGSREKLACGRAGR 218
PG A +R P + G GP G L G E+ G G
Sbjct: 686 PGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAA------GTPGLQGMPGERGGLGSPG- 738
Query: 219 AARTGRGEGGRRAEEEAAGRRRRRRPGRTRGIPRAAG 255
+ +GE G + G+ R P G P AG
Sbjct: 739 -PKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAG 774
Score = 46.6 bits (109), Expect = 2e-05
Identities = 68/234 (29%), Positives = 82/234 (35%), Gaps = 42/234 (17%)
Query: 29 GRAAGVESRRRAGEGAAGRRDGGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAAR 88
G G R GE G G GPPGG+G PG K + P
Sbjct: 819 GEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGP-------PGPQGVKGERGSPGGPGA 871
Query: 89 GTAPPAPPRQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGLFPAPPPAPARTGP 148
P A + LP P P P P G+P P PGP G A P +P +GP
Sbjct: 872 AGFPGA---RGLPGP-PGSNGNPGPPGPSGSPGKDGP----PGPAGNTGA-PGSPGVSGP 922
Query: 149 AGKAAADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLLLLHGAMRLGGGSR 208
G D G+PG + SP AQ G GPL + + GA L G
Sbjct: 923 KG----DAGQPGE------KGSPG------AQGPPGAPGPLGIAGIT---GARGLAGPP- 962
Query: 209 EKLACGRAGRAARTG-RGEGGRRAEEEAAGRRRRRRPGRTRGIPRAAGGLSRAG 261
G G G +G G + A G R P +G+P AG G
Sbjct: 963 -----GMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPG 1011
Score = 45.8 bits (107), Expect = 4e-05
Identities = 64/230 (27%), Positives = 78/230 (33%), Gaps = 32/230 (13%)
Query: 39 RAGEGAAGRRDGGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQ 98
R +G G + G G PG G++ LPG + P AP R
Sbjct: 266 RGFDGRNGEK-GETGAPGLKGENG-------LPG------ENGAPGPMGPRGAPGERGRP 311
Query: 99 CLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGLFPAPPPAPARTGPAGK-----AA 153
LP G+ R G P P P PG G FP P A GPAG A
Sbjct: 312 GLPGAAGARGND-GARGSDGQPGPPGP----PGTAG-FPGSPGAKGEVGPAGSPGSNGAP 365
Query: 154 ADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLLLLHGAMRLGGGSREKLAC 213
RG PGP + P P + G GP + GA L G
Sbjct: 366 GQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAG------IPGAPGLMGARGPPGPA 419
Query: 214 GRAGR-AARTGRGEGGRRAEEEAAGRRRRRRPGRTRGIPRAAGGLSRAGT 262
G G R G GE G+ + G R R G+P A G + G+
Sbjct: 420 GANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGS 469
Score = 45.1 bits (105), Expect = 7e-05
Identities = 70/262 (26%), Positives = 84/262 (32%), Gaps = 71/262 (27%)
Query: 44 AAGRRDGGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAARGTAP--PAPPRQCLP 101
A R G GP G GD PG + +P + + +P P PP C
Sbjct: 94 APTRPPNGQGPQGPKGD----------PGPPGIPGRNGDPGIPGQPGSPGSPGPPGICES 143
Query: 102 TPCPPLGH----------------GLRPRPPPGTPP--------------PRCPRTLAP- 130
P P + GL P P PP P P P
Sbjct: 144 CPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPP 203
Query: 131 ------GPRGLFPAPPPAPARTGPAGKAAADRGRPGPAAGRRVRRSPSFPPFLLAQTRLG 184
GP G P PP A +GPAGK + GRPG R + P G
Sbjct: 204 GEPGQAGPSGP-PGPPGAIGPSGPAGK-DGESGRPGRPGERGLPGPP------------G 249
Query: 185 RTGPLALCLLLLLHGAMRLGGGSREKLACGRAGRAARTGRGEGGRRAEEEAAG-RRRRRR 243
GP + + G G + EK G G +GE G E A G R
Sbjct: 250 IKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGL-----KGENGLPGENGAPGPMGPRGA 304
Query: 244 PGR--TRGIPRAAGGLSRAGTR 263
PG G+P AAG G R
Sbjct: 305 PGERGRPGLPGAAGARGNDGAR 326
Score = 44.3 bits (103), Expect = 1e-04
Identities = 64/230 (27%), Positives = 76/230 (33%), Gaps = 40/230 (17%)
Query: 42 EGAAGRRD--GGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQC 99
+G AG R G GP G AG+ +PGG P + +P P
Sbjct: 503 KGPAGERGAPGPAGPRGAAGE----PGRDGVPGG---------PGMRGMPGSPGGPGSDG 549
Query: 100 LPTPCPPLGHGLRPRPPPGTPPPRCPRTLA-PGPRGLFPAPPPAPARTGPAGKAAADRGR 158
P P G RP PP + P P + PGP+G AP R GP G
Sbjct: 550 KPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGG-------- 601
Query: 159 PGPAA--GRRVRRSPSFPPFLLA----QTRLGRTGPLALCLLLLLHGAMRLGGGSREKLA 212
PGP G+ P PP + G GP L G GG E
Sbjct: 602 PGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQG------LQGLPGTGGPPGEN-- 653
Query: 213 CGRAGRAARTG-RGEGGRRAEEEAAGRRRRRRPGRTRGIPRAAGGLSRAG 261
G+ G G G G + AG R P G P GG G
Sbjct: 654 -GKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPG 702
Score = 38.9 bits (89), Expect = 0.005
Identities = 69/255 (27%), Positives = 82/255 (32%), Gaps = 75/255 (29%)
Query: 53 GPPGGAGDHQTLQRASLLPGGSADKDQEREP----SLAARGTAPPAPPRQCLPTPCPPLG 108
GPPG AG+ A PG S K +P S A+G PP P PLG
Sbjct: 903 GPPGPAGN----TGAPGSPGVSGPKGDAGQPGEKGSPGAQG--PPGAPG--------PLG 948
Query: 109 -------HGLRPRPPPGTPPPRCPRTLAPGPRGLF-----------------PAPPPAPA 144
GL PPG P PR +PGP+G+ P P P
Sbjct: 949 IAGITGARGLAG--PPGMPGPRG----SPGPQGVKGESGKPGANGLSGERGPPGPQGLPG 1002
Query: 145 RTGPAGKAAADR--------GRPGPAAGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLLL 196
G AG+ D GR G G+ R P A G GP+
Sbjct: 1003 LAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPV------- 1055
Query: 197 LHGAMRLGGGSREKLACGRAGRAARTG----------RGEGGRRAEEEAAGRRRRRRPGR 246
G G E G AG G RG+ G E AAG + R
Sbjct: 1056 --GPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPG 1113
Query: 247 TRGIPRAAGGLSRAG 261
G P + G + G
Sbjct: 1114 NPGAPGSPGPAGQQG 1128
Score = 37.0 bits (84), Expect = 0.019
Identities = 48/150 (32%), Positives = 55/150 (36%), Gaps = 22/150 (14%)
Query: 29 GRAAGVESRRRAGEGAAGRRDGGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAAR 88
G G AG A G GPPG AG + A L GG+ + + A+
Sbjct: 390 GSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANG----APGLRGGAGEPGKN-----GAK 440
Query: 89 GTAPPAPPRQCLPTPCPPLGHGLRPRP-PPGTP-----PPRCPRTLAPGPRGLFPAPPPA 142
G P R P P G + PG P P APG RG PA P
Sbjct: 441 GEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRG--PAGPNG 498
Query: 143 -PARTGPAGKAAADRGRPGPAAGRRVRRSP 171
P GPAG +RG PGPA R P
Sbjct: 499 IPGEKGPAG----ERGAPGPAGPRGAAGEP 524
Score = 36.6 bits (83), Expect = 0.024
Identities = 25/64 (39%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 101 PTPCPPLGHGLRPRPPPGTPPPRCPRTLAP-GPRGLFPAPPPAPARTGPAG--KAAADRG 157
P P P G P P T P R P P GP+G P PP P R G G G
Sbjct: 75 PNPEIPFGECCAVCPQPPTAPTRPPNGQGPQGPKG-DPGPPGIPGRNGDPGIPGQPGSPG 133
Query: 158 RPGP 161
PGP
Sbjct: 134 SPGP 137
Score = 35.8 bits (81), Expect = 0.041
Identities = 44/137 (32%), Positives = 51/137 (37%), Gaps = 30/137 (21%)
Query: 43 GAAGRRDGGWGPPGGAGDH-QTLQRASL-------------LPGGSADKDQEREPSLAAR 88
G AG R G GP G GD +T +R + PG Q+ A
Sbjct: 1077 GPAGSR-GAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQ-----GAI 1130
Query: 89 GTAPPAPPRQCLPTPCPPLGHGLRPRPPP-GTPPPRCPRTLAPGPRGLFPAPPPAPARTG 147
G+ PA PR + PP G P P G P PR R G RG P P + G
Sbjct: 1131 GSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNR----GERG-SEGSPGHPGQPG 1185
Query: 148 PAGKAAADRGRPGPAAG 164
P G G PGP G
Sbjct: 1186 PPGPP----GAPGPCCG 1198
>gi|11386183 WAS protein family, member 2 [Homo sapiens]
Length = 498
Score = 50.8 bits (120), Expect = 1e-06
Identities = 35/103 (33%), Positives = 41/103 (39%), Gaps = 9/103 (8%)
Query: 92 PPAPPRQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGLFPAPPPAPAR----TG 147
PP PP +P P PP+G G PGTPPP P + P P P PPP P T
Sbjct: 324 PPPPPMIGIPPPPPPVGFG-----SPGTPPPPSPPSFPPHPDFAAPPPPPPPPAADYPTL 378
Query: 148 PAGKAAADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTGPLA 190
P + G P P PPF A + PL+
Sbjct: 379 PPPPLSQPTGGAPPPPPPPPPPGPPPPPFTGADGQPAIPPPLS 421
Score = 49.7 bits (117), Expect = 3e-06
Identities = 56/223 (25%), Positives = 78/223 (34%), Gaps = 47/223 (21%)
Query: 5 RRLRKEGPRVG------VRKREEEEEKSSLGRAAGVESRRRAGEGAAGRRDGGWGPP--- 55
R+ +K+ P G ++ R+EE EK +G+ VES+ + G G+ P
Sbjct: 179 RKEKKDNPNRGNVNPRKIKTRKEEWEKMKMGQEF-VESKEKLGTS-------GYPPTLVY 230
Query: 56 --GGAGDHQTLQRASLLPGGSADKDQEREPSLAARGTAPP-----------------APP 96
G G + + +S P +D PS + PP P
Sbjct: 231 QNGSIGCVENVDASSYPPPPQSDSASSPSPSFSEDNLPPPPAEFSYPVDNQRGSGLAGPK 290
Query: 97 RQCL-----PTPCPPLGH------GLRPRPPPGTPPPRCPRTLAPGPRGLFPAPPPAPAR 145
R + P P PPLG G P P P PPP P P F +P P
Sbjct: 291 RSSVVSPSHPPPAPPLGSPPGPKPGFAPPPAPPPPPPPMIGIPPPPPPVGFGSPGTPPPP 350
Query: 146 TGPAGKAAADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTGP 188
+ P+ D P P P+ PP L+Q G P
Sbjct: 351 SPPSFPPHPDFAAPPPPPPPPAADYPTLPPPPLSQPTGGAPPP 393
Score = 41.6 bits (96), Expect = 8e-04
Identities = 27/66 (40%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 92 PPAPPRQCLPT-PCPPLGH--GLRPRPPPGTPPPRCPRTLAPGPRGLFPAPPPAPARTGP 148
PP PP PT P PPL G P PPP PPP P G G PPP T P
Sbjct: 367 PPPPPAADYPTLPPPPLSQPTGGAPPPPPPPPPPGPPPPPFTGADGQPAIPPPLSDTTKP 426
Query: 149 AGKAAA 154
A
Sbjct: 427 KSSLPA 432
>gi|19263349 Cbp/p300-interacting transactivator, with Glu/Asp-rich
carboxy-terminal domain, 4 [Homo sapiens]
Length = 184
Score = 50.4 bits (119), Expect = 2e-06
Identities = 45/111 (40%), Positives = 49/111 (44%), Gaps = 17/111 (15%)
Query: 80 EREPSLAARGTAPPAPPRQCLPTPCPPLGHGLRPRPPP-GTPPPRCPRTLAPGPRG---- 134
+R PS AA P R P P L GLRPR P G PPPR P LA G G
Sbjct: 15 QRPPSAAA--AHGPHALRTLPPYAGPGLDSGLRPRGAPLGPPPPRQPGALAYGAFGPPSS 72
Query: 135 --LFPA-PPPA-------PARTGPAGKAAADRGRPGPAAGRRVRRSPSFPP 175
FPA PPPA P T G+AAA PG G + S + PP
Sbjct: 73 FQPFPAVPPPAAGIAHLQPVATPYPGRAAAPPNAPGGPPGPQPAPSAAAPP 123
Score = 36.2 bits (82), Expect = 0.032
Identities = 34/110 (30%), Positives = 36/110 (32%), Gaps = 19/110 (17%)
Query: 54 PPGGAGDHQTLQRASLLPGGSADKDQEREPSLAARGTAPP-----------APPRQCLPT 102
PP A H +L P D P A G PP PP P
Sbjct: 17 PPSAAAAHGPHALRTLPPYAGPGLDSGLRPRGAPLGPPPPRQPGALAYGAFGPPSSFQPF 76
Query: 103 PC-PPLGHGLRPRPPPGTPPP---RCPRTLAPGPRGLFPAP----PPAPA 144
P PP G+ P TP P P GP G PAP PP PA
Sbjct: 77 PAVPPPAAGIAHLQPVATPYPGRAAAPPNAPGGPPGPQPAPSAAAPPPPA 126
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 50.4 bits (119), Expect = 2e-06
Identities = 51/162 (31%), Positives = 59/162 (36%), Gaps = 31/162 (19%)
Query: 18 KREEEEEKSSL------GRAAGVESRRRAGEGAAGRRDGGWGPPGGAGDHQTLQRASLLP 71
K EE EEK + G A +E A +G G P G+ A P
Sbjct: 479 KVEELEEKGLIRILRGPGDAVSIEILPVAVATPSGGDAPTPGVPTGSPSPDLAPAAEPAP 538
Query: 72 GGSADKDQEREPSLAARGTAPPAPPRQCLPTP-------CPPLGHGLRPRPPPGTPPPRC 124
G +A P L + APP+ P Q P P PPL L P PPP PPP
Sbjct: 539 G-AAPPPPPPLPGLPSPQEAPPSAPPQAPPLPGSPEPPPAPPLPGDLPPPPPPPPPPPGT 597
Query: 125 PRTLAPGPRGLFPAPPPAPARTGPAGKAAADRGRPGPAAGRR 166
+ P P P PPP P G P A GRR
Sbjct: 598 DGPVPPPP----PPPPPPP-------------GGPPDALGRR 622
>gi|157412247 RUN and SH3 domain containing 1 isoform b [Homo
sapiens]
Length = 796
Score = 50.1 bits (118), Expect = 2e-06
Identities = 42/114 (36%), Positives = 49/114 (42%), Gaps = 23/114 (20%)
Query: 71 PGGSADKDQE----REPSLAARGTAPPAPPRQCLPTPCPPLGHGL-RPRPPPGTPPPRCP 125
PGGS+ +E +E +R APP PPR PP+G L PRPPP PPR
Sbjct: 358 PGGSSAPPREVTTFKELRSRSRAPAPPVPPRD------PPVGWALVPPRPPPPPVPPRRK 411
Query: 126 RT------LAPGPRGLFPAPPPAPARTGPAGKAAADRGRPGPAAGRRVRRSPSF 173
+ +A G A PA PA K PG AG VR S SF
Sbjct: 412 KNRPGLQPIAEGQSEEGRAVSPAAGEEAPAAK------EPGAQAGLEVRSSWSF 459
Score = 33.5 bits (75), Expect = 0.21
Identities = 28/78 (35%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 115 PPPGTP-----PPRCPRTLAP-GPRGLFPAPPPAPARTGPAGKA-AADRGRPGPAAGRRV 167
PP G+P PPR T R PA PP P R P G A R P P RR
Sbjct: 353 PPSGSPGGSSAPPREVTTFKELRSRSRAPA-PPVPPRDPPVGWALVPPRPPPPPVPPRRK 411
Query: 168 RRSPSFPPFLLAQTRLGR 185
+ P P Q+ GR
Sbjct: 412 KNRPGLQPIAEGQSEEGR 429
>gi|157412245 RUN and SH3 domain containing 1 isoform a [Homo
sapiens]
Length = 902
Score = 50.1 bits (118), Expect = 2e-06
Identities = 42/114 (36%), Positives = 49/114 (42%), Gaps = 23/114 (20%)
Query: 71 PGGSADKDQE----REPSLAARGTAPPAPPRQCLPTPCPPLGHGL-RPRPPPGTPPPRCP 125
PGGS+ +E +E +R APP PPR PP+G L PRPPP PPR
Sbjct: 358 PGGSSAPPREVTTFKELRSRSRAPAPPVPPRD------PPVGWALVPPRPPPPPVPPRRK 411
Query: 126 RT------LAPGPRGLFPAPPPAPARTGPAGKAAADRGRPGPAAGRRVRRSPSF 173
+ +A G A PA PA K PG AG VR S SF
Sbjct: 412 KNRPGLQPIAEGQSEEGRAVSPAAGEEAPAAK------EPGAQAGLEVRSSWSF 459
Score = 33.5 bits (75), Expect = 0.21
Identities = 28/78 (35%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 115 PPPGTP-----PPRCPRTLAP-GPRGLFPAPPPAPARTGPAGKA-AADRGRPGPAAGRRV 167
PP G+P PPR T R PA PP P R P G A R P P RR
Sbjct: 353 PPSGSPGGSSAPPREVTTFKELRSRSRAPA-PPVPPRDPPVGWALVPPRPPPPPVPPRRK 411
Query: 168 RRSPSFPPFLLAQTRLGR 185
+ P P Q+ GR
Sbjct: 412 KNRPGLQPIAEGQSEEGR 429
>gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
Length = 1006
Score = 50.1 bits (118), Expect = 2e-06
Identities = 58/189 (30%), Positives = 68/189 (35%), Gaps = 30/189 (15%)
Query: 73 GSADKDQEREPSLAARGTAPPAPPRQCLPT-------------PCPPLGHGLRPRPP--P 117
GSA R SL R T PP P + CPP G P+ P P
Sbjct: 265 GSAPSRSLRGCSLRFRNTPPPIPGSDQPSSHGRPRFRETGDSEDCPPFRAGTPPQQPTAP 324
Query: 118 GTPPPRCPRTLAPGPRGLFPAPPPAP-ARTGPAGKAAADRGRPGPAAGRRVRRSPSFPPF 176
+ P R+ GPR P P PAP P A+ R RPG R P
Sbjct: 325 SSEWPGPQRSPGTGPRWTAPLPRPAPLPAKRPGDSPASKRPRPG-GVSPEARDPPKGENP 383
Query: 177 LLAQTRLGRTGPLALCLLLLLHGAMRLGGGSREKLACGRAGRAARTGRGEG-GRRAEEEA 235
L + G TGP + G LGGG + GR G+A GEG R
Sbjct: 384 LCSSEAAGETGPTQ------VRGPDALGGGRLQ--GKGREGKAP----GEGVSPRPAPPR 431
Query: 236 AGRRRRRRP 244
G+ R RP
Sbjct: 432 LGKPPRSRP 440
Score = 32.3 bits (72), Expect = 0.46
Identities = 51/171 (29%), Positives = 58/171 (33%), Gaps = 16/171 (9%)
Query: 28 LGRAAGVESRRRAGEGAAGR-RDGGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPS-- 84
L R A + ++R A+ R R GG P S G Q R P
Sbjct: 345 LPRPAPLPAKRPGDSPASKRPRPGGVSPEARDPPKGENPLCSSEAAGETGPTQVRGPDAL 404
Query: 85 ----LAARGTAPPAPPRQCLPTPCPP-LGHGLRPRPPPGTPPPRCPRTLAPGPRGLFPAP 139
L +G AP P P PP LG R RPP G P P T L P
Sbjct: 405 GGGRLQGKGREGKAPGEGVSPRPAPPRLGKPPRSRPPQGLAQP--PETFFFERSRLVPVS 462
Query: 140 PPAP-ARTGPAGKAAADRGRPGPAAGRRVRRS--PSFPPFLLAQTRLGRTG 187
A G +G A A R G R RS PS P Q + R G
Sbjct: 463 AELERAGHGFSGDAEA---RSGDLGARPASRSSLPSAPAPPAQQPQAARHG 510
Score = 32.3 bits (72), Expect = 0.46
Identities = 40/136 (29%), Positives = 53/136 (38%), Gaps = 23/136 (16%)
Query: 12 PRVGVRKREEEEEKSSLGRAAGVESRRRAGEGAAGRRDGGWGPPGGAGDHQTLQRASLLP 71
P VG R+ +E ++ A G +++ G AG+R G A + RA L
Sbjct: 845 PSVGKRRLAVQEILAARA-ARGPQAQEEDEVGGAGQR--GRTGQEDADSREGSPRAGL-- 899
Query: 72 GGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPG 131
P+L +RG A PAP + L PL R PG PR + AP
Sbjct: 900 ----------PPALGSRGPAAPAPRKASL----LPLQRLRRRSVRPGVVVPRVRVSKAPA 945
Query: 132 PRGLFPAPPPAPARTG 147
P P PAR G
Sbjct: 946 P----TFQPERPARKG 957
Score = 29.6 bits (65), Expect = 3.0
Identities = 39/124 (31%), Positives = 43/124 (34%), Gaps = 32/124 (25%)
Query: 80 EREPSLAARGTAP---PAPPRQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGLF 136
+R P R TAP PAP P P RPRP +P R P P+G
Sbjct: 332 QRSPGTGPRWTAPLPRPAPLPAKRPGDSPA---SKRPRPGGVSPEARDP------PKGEN 382
Query: 137 P-APPPAPARTGPAGKAAAD---------RGRPGPAAGRRVRRSP----------SFPPF 176
P A TGP D +GR G A G V P S PP
Sbjct: 383 PLCSSEAAGETGPTQVRGPDALGGGRLQGKGREGKAPGEGVSPRPAPPRLGKPPRSRPPQ 442
Query: 177 LLAQ 180
LAQ
Sbjct: 443 GLAQ 446
>gi|56118221 amyloid beta (A4) precursor protein-binding, family B,
member 1 interacting protein [Homo sapiens]
Length = 666
Score = 50.1 bits (118), Expect = 2e-06
Identities = 40/111 (36%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 74 SADKDQEREPSLAARGTAP---PAPPRQCLPTPCPP--LGHGLRPRPPPG--TPPPRCPR 126
S+D L A+GT PAPP LP P PP L P PPP PPP
Sbjct: 525 SSDTSGSPATPLKAKGTGGGGLPAPPDDFLPPPPPPPPLDDPELPPPPPDFMEPPPDFVP 584
Query: 127 TLAPGPRGLFPA--PPPAPARTGPAGKAAADRGRPGPAAGRRVRRSPSFPP 175
P G+ + PPP P PA D RP PA +R P PP
Sbjct: 585 PPPPSYAGIAGSELPPPPPPPPAPAPAPVPDSARPPPAVAKR----PPVPP 631
Score = 30.0 bits (66), Expect = 2.3
Identities = 25/78 (32%), Positives = 30/78 (38%), Gaps = 18/78 (23%)
Query: 95 PPRQCLPTPCPPLGHGLR-------PRPPPGTPPPRCPRTLAPGPRGLFPAPPPAPARTG 147
PP +P P PP G+ P PPP P P + PPPA A+
Sbjct: 578 PPPDFVPPP-PPSYAGIAGSELPPPPPPPPAPAPAPVPDS---------ARPPPAVAKRP 627
Query: 148 PA-GKAAADRGRPGPAAG 164
P K + G PG A G
Sbjct: 628 PVPPKRQENPGHPGGAGG 645
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 50.1 bits (118), Expect = 2e-06
Identities = 70/255 (27%), Positives = 92/255 (36%), Gaps = 45/255 (17%)
Query: 36 SRRRAGEGAAGRRDGGWGPPGGAGDHQTLQRASLLPGGSADKDQE--REPSLAARGTAPP 93
S + +G G+ G GPPG G + PG A+K E R PS PP
Sbjct: 1146 SGEKGDQGFQGQ-PGFPGPPGPPGFPGKVGSPGP-PGPQAEKGSEGIRGPSGLPGSPGPP 1203
Query: 94 APPRQCLPTPCPPLGH-----GLRPRPPPGTPPP---------RCPRTLAPGPRGLF--P 137
PP P L GLR P P PP + PGP+G P
Sbjct: 1204 GPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKP 1263
Query: 138 APPPAPARTGPAGKAAA--DRGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLL 195
PP + R G G+ A +GRPGP P PP G+ GP + +
Sbjct: 1264 GPPGSTGRPGAEGEPGAMGPQGRPGPPG----HVGPPGPP--------GQPGPAGISAV- 1310
Query: 196 LLHGAMRLGGGSREKLACGRAGRAARTGR-------GEGGRRAEEEAAGRRRRRRPGRTR 248
G G + E+ G G+ G G G +E G++ P +
Sbjct: 1311 ---GLKGDRGATGERGLAGLPGQPGPPGHPGPPGEPGTDGAAGKEGPPGKQGFYGPPGPK 1367
Query: 249 GIPRAAGGLSRAGTR 263
G P AAG +AG +
Sbjct: 1368 GDPGAAGQKGQAGEK 1382
Score = 42.4 bits (98), Expect = 4e-04
Identities = 65/231 (28%), Positives = 79/231 (34%), Gaps = 51/231 (22%)
Query: 41 GEGAAGRRDGGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAARGTAPPAPPR--Q 98
GE +G GPPG AG R P G++ + ++ PP PP
Sbjct: 1117 GEPGPPGSEGLPGPPGPAGP-----RGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPG 1171
Query: 99 CLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGLFPAPPPAPARTGPAGKAAAD--- 155
+ +P PP P+ G+ R P L PG P PP P GPAG D
Sbjct: 1172 KVGSPGPP-----GPQAEKGSEGIRGPSGL-PGS----PGPPGPPGIQGPAGLDGLDGKD 1221
Query: 156 -----RGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLLLLHGAMRLGGGSREK 210
RG PGPA + P F G+TG L K
Sbjct: 1222 GKPGLRGDPGPAGPPGLMGPPGFK---------GKTGHPGL---------------PGPK 1257
Query: 211 LACGRAGRAARTGRGEGGRRAEEEAAGRRRRRRPGRTRGIPRAAGGLSRAG 261
CG+ G TGR G E A G + R P G P G AG
Sbjct: 1258 GDCGKPGPPGSTGR--PGAEGEPGAMGPQGRPGPPGHVGPPGPPGQPGPAG 1306
Score = 34.7 bits (78), Expect = 0.092
Identities = 62/218 (28%), Positives = 74/218 (33%), Gaps = 30/218 (13%)
Query: 49 DGGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPLG 108
DG G PG GD L+ G K + P L P P C P PP
Sbjct: 1218 DGKDGKPGLRGDPGPAGPPGLM-GPPGFKGKTGHPGL-------PGPKGDC-GKPGPP-- 1266
Query: 109 HGLRPRPPPGTPPPRCPRTLAPGPRGLFPAPPPAPARTGPAGKAA----ADRGRPGP--A 162
G RP P PGP G PP P + GPAG +A DRG G
Sbjct: 1267 -GSTGRPGAEGEPGAMGPQGRPGPPG-HVGPPGPPGQPGPAGISAVGLKGDRGATGERGL 1324
Query: 163 AGRRVRRSPSFPPFLLAQT----RLGRTGPLALCLLLLLHGAMRLGGGSREKLACGRAGR 218
AG + P P + G+ GP G G + A G+ G+
Sbjct: 1325 AGLPGQPGPPGHPGPPGEPGTDGAAGKEGPPG------KQGFYGPPGPKGDPGAAGQKGQ 1378
Query: 219 AARTGR-GEGGRRAEEEAAGRRRRRRPGRTRGIPRAAG 255
A GR G G + + G P RG P A G
Sbjct: 1379 AGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGAPG 1416
Score = 33.9 bits (76), Expect = 0.16
Identities = 49/185 (26%), Positives = 59/185 (31%), Gaps = 60/185 (32%)
Query: 42 EGAAGR-----RDGGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAA-------RG 89
+GAAG+ + G +GPPG GD PG + K Q E A G
Sbjct: 1346 DGAAGKEGPPGKQGFYGPPGPKGD----------PGAAGQKGQAGEKGRAGMPGGPGKSG 1395
Query: 90 TAPPAPPRQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAP------------------- 130
+ P P P P GH P P P P ++
Sbjct: 1396 SMGPVGP----PGPAGERGHPGAPGPSGSPGLPGVPGSMGDMVNYDEIKRFIRQEIIKMF 1451
Query: 131 -------GPRGLFPAP-PPAPARTGPAGKAAADRGRPGPAAGRRVRRSPSFPPFLLAQTR 182
R FP AP R GP GK A GRPG SP P + + R
Sbjct: 1452 DERMAYYTSRMQFPMEMAAAPGRPGPPGKDGAP-GRPGAPG------SPGLPGQIGREGR 1504
Query: 183 LGRTG 187
G G
Sbjct: 1505 QGLPG 1509
Score = 31.2 bits (69), Expect = 1.0
Identities = 36/129 (27%), Positives = 44/129 (34%), Gaps = 26/129 (20%)
Query: 53 GPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQ------CLPTP--- 103
GP G G+ L + L PG + +K Q+ E P P R C+ P
Sbjct: 375 GPKGEKGESGALGPSGL-PGSTGEKGQKGEKGDGGIKGVPGKPGRDGRPGEICVIGPKGQ 433
Query: 104 ------CPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGLFPAP------PPAPARTGPAGK 151
P G P PP PP PG G P P P + GP GK
Sbjct: 434 KGDPGFVGPEGLAGEPGPPGLPGPPGIGLPGTPGDPGGPPGPKGDKGSSGIPGKEGPGGK 493
Query: 152 AAADRGRPG 160
G+PG
Sbjct: 494 P----GKPG 498
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 49.7 bits (117), Expect = 3e-06
Identities = 74/280 (26%), Positives = 86/280 (30%), Gaps = 39/280 (13%)
Query: 11 GPRVGVRKREEEEEKSSLGRAAGVESRRRAGEGAAGRRDGGWGPPGGAGDHQTLQRASLL 70
GP+ ++ ++ G R R GE G GPPG G +
Sbjct: 123 GPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQ 182
Query: 71 PGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPLGHGLRPRP-PPGTPPPRCPRTLA 129
G D+ +G P PR P G + P PG P P
Sbjct: 183 MAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPM--- 239
Query: 130 PGPRGLFPAPPPAPARTGPAGKA--AADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTG 187
GPRG P PP P G AGK A +RG PGP R +P P + G G
Sbjct: 240 -GPRGP-PGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPG---VKGHRGYPG 294
Query: 188 PLALCLLLLLHGAMRLGGGSREKLACGRAGRAARTG-------RGEGGRRAEEEAAGRRR 240
L GA G K G G G GE GR AAG R
Sbjct: 295 ---------LDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARG 345
Query: 241 RR------------RPGRTRGIPRAAGGLSRAGTRVLRYP 268
P G P A G AG R P
Sbjct: 346 NDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGP 385
Score = 42.7 bits (99), Expect = 3e-04
Identities = 79/277 (28%), Positives = 97/277 (35%), Gaps = 36/277 (12%)
Query: 2 GGQRRLRKEGPRVGVRKREEEEEKSSLGRAAGVESRRRAGEGAAGRRDGGWGPPGGAGDH 61
GG+ GP E+ E G A +R GA G R G GPPG AG
Sbjct: 783 GGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGAR-----GAPGER-GETGPPGPAG-- 834
Query: 62 QTLQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPLG----HGLR-PRPP 116
G K ++ E AP P P P G G R + P
Sbjct: 835 --FAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGP 892
Query: 117 PGTP--PPRCPRTLAPGPRGLFPAPPPAPARTGPAGK-----AAADRGRPGPAAGRRVRR 169
PG P R PG G P PP P GP+GK A D G PG AG +
Sbjct: 893 PGATGFPGAAGRVGPPGSNGN-PGPPGPP---GPSGKDGPKGARGDSGPPG-RAGEPGLQ 947
Query: 170 SPSFPPFLLAQT----RLGRTGPLALCLLLLLHGAMRLGGGSREKLACGRAGRAARTGRG 225
P+ PP + G GP L G + L G E+ G G + G
Sbjct: 948 GPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPS-----G 1002
Query: 226 EGGRRAEEEAAGRRRRRRPGRTRGIPRAAGGLSRAGT 262
E G++ A+G R P G+ AG R G+
Sbjct: 1003 EPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGS 1039
Score = 38.9 bits (89), Expect = 0.005
Identities = 71/270 (26%), Positives = 89/270 (32%), Gaps = 57/270 (21%)
Query: 11 GPRVGVRKREEEEEKSSLGRAAGVESRRRAGE-GAAGRR-----DGGWGPPGGAGDHQTL 64
GP+ EE ++ + G GV GE GA G R DG GP G G+
Sbjct: 477 GPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPS 536
Query: 65 QRASLLPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPLGHGLRPRPPPGTPPPRC 124
A G + D + EP L P GL RP P +
Sbjct: 537 GLAGP-KGANGDPGRPGEPGL--------------------PGARGLTGRPGDAGPQGKV 575
Query: 125 PRTLAPGPRGLFPAPPPAPARTGPA-----GKAAADRGRPGPAAGRRVRRSPSFPPFLLA 179
+ APG G P P AR P G A+ G PG A + + +P
Sbjct: 576 GPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGAN-GEPGKAGEKGLPGAPGLRGLPGK 634
Query: 180 QTRLGRTGPLALCLLLLLHGAMRLGGGSREKLACGRAGRAARTG----RGEGGRRAEEEA 235
G GP G G E+ A G +G G GEGG+ ++
Sbjct: 635 DGETGAAGP---------PGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGV 685
Query: 236 AG----------RRRRRRPGRTRGIPRAAG 255
G R R PG RG P A G
Sbjct: 686 PGEAGAPGLVGPRGERGFPGE-RGSPGAQG 714
Score = 37.0 bits (84), Expect = 0.019
Identities = 62/232 (26%), Positives = 79/232 (34%), Gaps = 52/232 (22%)
Query: 42 EGAAGRRDGGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAA-RGTAPPAPPRQCL 100
+G AG+R G G PG G+ + LPG S + ++ P + RG P P
Sbjct: 974 QGLAGQR-GIVGLPGQRGE----RGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGP---- 1024
Query: 101 PTPCPPLGH-GLRPRPPPGTPPPRCPRTLAPGPRGLF--------PAPPPAPARTGPAGK 151
P P G G P PP R G RG P PP +P GP GK
Sbjct: 1025 PGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGK 1084
Query: 152 AAADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLLLLHGAMRLGGGSREKL 211
DRG G AQ +G +GP GA + G +
Sbjct: 1085 -QGDRGEAG------------------AQGPMGPSGPA---------GARGIQGPQGPRG 1116
Query: 212 ACGRAGRAARTGRGEGGRRAEEEAAGRRRRRRPGRTRGIPRAAGGLSRAGTR 263
G AG GE G + G + P G A+G +G R
Sbjct: 1117 DKGEAGEP-----GERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPR 1163
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 49.7 bits (117), Expect = 3e-06
Identities = 74/280 (26%), Positives = 86/280 (30%), Gaps = 39/280 (13%)
Query: 11 GPRVGVRKREEEEEKSSLGRAAGVESRRRAGEGAAGRRDGGWGPPGGAGDHQTLQRASLL 70
GP+ ++ ++ G R R GE G GPPG G +
Sbjct: 54 GPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQ 113
Query: 71 PGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPLGHGLRPRP-PPGTPPPRCPRTLA 129
G D+ +G P PR P G + P PG P P
Sbjct: 114 MAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPM--- 170
Query: 130 PGPRGLFPAPPPAPARTGPAGKA--AADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTG 187
GPRG P PP P G AGK A +RG PGP R +P P + G G
Sbjct: 171 -GPRGP-PGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPG---VKGHRGYPG 225
Query: 188 PLALCLLLLLHGAMRLGGGSREKLACGRAGRAARTG-------RGEGGRRAEEEAAGRRR 240
L GA G K G G G GE GR AAG R
Sbjct: 226 ---------LDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARG 276
Query: 241 RR------------RPGRTRGIPRAAGGLSRAGTRVLRYP 268
P G P A G AG R P
Sbjct: 277 NDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGP 316
Score = 42.7 bits (99), Expect = 3e-04
Identities = 79/277 (28%), Positives = 97/277 (35%), Gaps = 36/277 (12%)
Query: 2 GGQRRLRKEGPRVGVRKREEEEEKSSLGRAAGVESRRRAGEGAAGRRDGGWGPPGGAGDH 61
GG+ GP E+ E G A +R GA G R G GPPG AG
Sbjct: 714 GGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGAR-----GAPGER-GETGPPGPAG-- 765
Query: 62 QTLQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPLG----HGLR-PRPP 116
G K ++ E AP P P P G G R + P
Sbjct: 766 --FAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGP 823
Query: 117 PGTP--PPRCPRTLAPGPRGLFPAPPPAPARTGPAGK-----AAADRGRPGPAAGRRVRR 169
PG P R PG G P PP P GP+GK A D G PG AG +
Sbjct: 824 PGATGFPGAAGRVGPPGSNGN-PGPPGPP---GPSGKDGPKGARGDSGPPG-RAGEPGLQ 878
Query: 170 SPSFPPFLLAQT----RLGRTGPLALCLLLLLHGAMRLGGGSREKLACGRAGRAARTGRG 225
P+ PP + G GP L G + L G E+ G G + G
Sbjct: 879 GPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPS-----G 933
Query: 226 EGGRRAEEEAAGRRRRRRPGRTRGIPRAAGGLSRAGT 262
E G++ A+G R P G+ AG R G+
Sbjct: 934 EPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGS 970
Score = 38.9 bits (89), Expect = 0.005
Identities = 71/270 (26%), Positives = 89/270 (32%), Gaps = 57/270 (21%)
Query: 11 GPRVGVRKREEEEEKSSLGRAAGVESRRRAGE-GAAGRR-----DGGWGPPGGAGDHQTL 64
GP+ EE ++ + G GV GE GA G R DG GP G G+
Sbjct: 408 GPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPS 467
Query: 65 QRASLLPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPLGHGLRPRPPPGTPPPRC 124
A G + D + EP L P GL RP P +
Sbjct: 468 GLAGP-KGANGDPGRPGEPGL--------------------PGARGLTGRPGDAGPQGKV 506
Query: 125 PRTLAPGPRGLFPAPPPAPARTGPA-----GKAAADRGRPGPAAGRRVRRSPSFPPFLLA 179
+ APG G P P AR P G A+ G PG A + + +P
Sbjct: 507 GPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGAN-GEPGKAGEKGLPGAPGLRGLPGK 565
Query: 180 QTRLGRTGPLALCLLLLLHGAMRLGGGSREKLACGRAGRAARTG----RGEGGRRAEEEA 235
G GP G G E+ A G +G G GEGG+ ++
Sbjct: 566 DGETGAAGP---------PGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGV 616
Query: 236 AG----------RRRRRRPGRTRGIPRAAG 255
G R R PG RG P A G
Sbjct: 617 PGEAGAPGLVGPRGERGFPGE-RGSPGAQG 645
Score = 37.0 bits (84), Expect = 0.019
Identities = 62/232 (26%), Positives = 79/232 (34%), Gaps = 52/232 (22%)
Query: 42 EGAAGRRDGGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAA-RGTAPPAPPRQCL 100
+G AG+R G G PG G+ + LPG S + ++ P + RG P P
Sbjct: 905 QGLAGQR-GIVGLPGQRGE----RGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGP---- 955
Query: 101 PTPCPPLGH-GLRPRPPPGTPPPRCPRTLAPGPRGLF--------PAPPPAPARTGPAGK 151
P P G G P PP R G RG P PP +P GP GK
Sbjct: 956 PGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGK 1015
Query: 152 AAADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLLLLHGAMRLGGGSREKL 211
DRG G AQ +G +GP GA + G +
Sbjct: 1016 -QGDRGEAG------------------AQGPMGPSGPA---------GARGIQGPQGPRG 1047
Query: 212 ACGRAGRAARTGRGEGGRRAEEEAAGRRRRRRPGRTRGIPRAAGGLSRAGTR 263
G AG GE G + G + P G A+G +G R
Sbjct: 1048 DKGEAGEP-----GERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPR 1094
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 49.7 bits (117), Expect = 3e-06
Identities = 67/252 (26%), Positives = 86/252 (34%), Gaps = 53/252 (21%)
Query: 20 EEEEEKSSLGRAAGVESRRRAGEGAAGRRDGGWGPPGGAGDHQTLQRASLLPGGSADKDQ 79
++E K + G E+ R+ G GG GPP + +T R PG S
Sbjct: 882 KKEPPKEETAQLTGPEAGRKPARGVGS---GGQGPPPPRRESRTETRWGPRPGSSRRGIP 938
Query: 80 EREPSLAARGTAP---PAPPRQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGLF 136
EP R P P PP + P PL G PP P + + GP+
Sbjct: 939 PEEPGAPPRRAGPIKKPPPPTKVEELPPKPLEQGDETPKPPKPDPLKITKGKLGGPK--- 995
Query: 137 PAPPPAPARTGPAGKAAADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLLL 196
T P G + P P R+RR S+ R GP +
Sbjct: 996 --------ETPPNGNLS-----PAP----RLRRDYSYE----------RVGPTSC----- 1023
Query: 197 LHGAMRLGGGSREKLACGRAGRAARTGRGEGGRRAEEEAAGRRRRRRPGRTRGI-----P 251
G G E A GR R GRG G R+ E + R R GR G P
Sbjct: 1024 ------RGRGRGEYFARGRGFRGTYGGRGRGA-RSREFRSYREFRGDDGRGGGTGGPNHP 1076
Query: 252 RAAGGLSRAGTR 263
A G + + TR
Sbjct: 1077 PAPRGRTASETR 1088
Score = 37.0 bits (84), Expect = 0.019
Identities = 51/194 (26%), Positives = 66/194 (34%), Gaps = 22/194 (11%)
Query: 81 REPSLAARGTAPPAPPRQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGLFPAPP 140
+E +L APP P P P G R P G P R G G P P
Sbjct: 1128 KEGTLTQVPLAPPPPGAPPSPAPARFTARGGRVFTPRGVPSRR-------GRGGGRPPPQ 1180
Query: 141 PAPARTGPAGKAAADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLLLLHGA 200
P + PA A + GP + P GPL+ +G
Sbjct: 1181 VCPGWSPPAKSLAPKKPPTGPLPPSKEPLKEKLIP-----------GPLSPVARGGSNGG 1229
Query: 201 MRLGGGSREKLACGRAGRAARTGRGEGGRR--AEEEAAGRRRRRRPGRTRGIPRAAGGLS 258
+G E+ R GRA + + RR E E A R +P T +P +A G
Sbjct: 1230 SNVGMEDGERPRRRRHGRAQQQDKPPRFRRLKQERENAARGSEGKPSLT--LPASAPGPE 1287
Query: 259 RAGTRVLRYPSSHR 272
A T V P+ R
Sbjct: 1288 EALTTVTVAPAPRR 1301
Score = 36.2 bits (82), Expect = 0.032
Identities = 40/138 (28%), Positives = 46/138 (33%), Gaps = 40/138 (28%)
Query: 17 RKREEEEEKSSLGRAAGVESRRRAGEGAAGRRDGGWGPPGGAGDHQTLQRASLLPGGSAD 76
R+REEEE + E RR A R D +G P D
Sbjct: 469 RRREEEERRMQ-------EERRAACAEKLKRLDEKFGAP--------------------D 501
Query: 77 KDQEREPSLAARGTAPPAPPRQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGLF 136
K + EP+ APPA P P P P P PPP + P P
Sbjct: 502 KRLKAEPA------APPAAPSTPAPPPAVPKELPAPPAPPPASAP-------TPETEPEE 548
Query: 137 PAPPPAPARTGPAGKAAA 154
PA P T G AAA
Sbjct: 549 PAQAPPAQSTPTPGVAAA 566
Score = 36.2 bits (82), Expect = 0.032
Identities = 19/50 (38%), Positives = 23/50 (46%)
Query: 89 GTAPPAPPRQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGLFPA 138
G+ PPAPP P P+G L+P PPP + P P FPA
Sbjct: 1994 GSLPPAPPPAPPPLSLLPVGPALQPPSLAVRPPPAPATRVLPSPARPFPA 2043
Score = 35.8 bits (81), Expect = 0.041
Identities = 41/142 (28%), Positives = 46/142 (32%), Gaps = 23/142 (16%)
Query: 49 DGGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAAR-----GTAPPAPPRQCLPTP 103
DG GA H+ Q AS +ER P + + PP P T
Sbjct: 346 DGRDSDEEGAEGHRDSQSAS---------GEERPPEADGKKGNSPNSEPPTPKTAWAETS 396
Query: 104 CPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGLFPAPPPAPARTGPAGKAAADRGRPGPAA 163
PP P P P PPP GP G + P P R GP K A
Sbjct: 397 RPPETEPGPPAPKPPLPPPH------RGPAGNWGPPGDYPDRGGPPCKPPAPEDED---E 447
Query: 164 GRRVRRSPSFPPFLLAQTRLGR 185
R RR S LA R R
Sbjct: 448 AWRQRRKQSSSEISLAVERARR 469
Score = 35.0 bits (79), Expect = 0.071
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 77 KDQEREPSLAARGTAPPAPPRQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGLF 136
+ Q+ + +G+APP P P+P P+ G P P PP P+ L PG G
Sbjct: 658 QQQQHQWQQHQQGSAPPTPVP---PSPPQPVTLGAVPAPQAPPPP---PKALYPGALGRP 711
Query: 137 PAPPP 141
P PP
Sbjct: 712 PPMPP 716
Score = 33.9 bits (76), Expect = 0.16
Identities = 38/121 (31%), Positives = 42/121 (34%), Gaps = 19/121 (15%)
Query: 59 GDHQTLQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPLGHGLRPRPPPG 118
GD T A P S + E R PP PP P P G PG
Sbjct: 793 GDVFTATPAEPRPLTSPLRQAADEDDKGMRSETPPVPP----PPPYLASYPGFPENGAPG 848
Query: 119 TPPPRCPRTLAPGPRGLFPAPP----------PAPARTGPAGKAAADRGRPGPAAGRRVR 168
P R P PGPR L P PP P P + P + A GP AGR+
Sbjct: 849 PPISRFPLE-EPGPRPL-PWPPGSDEVAKIQTPPPKKEPPKEETAQ---LTGPEAGRKPA 903
Query: 169 R 169
R
Sbjct: 904 R 904
Score = 33.5 bits (75), Expect = 0.21
Identities = 45/186 (24%), Positives = 63/186 (33%), Gaps = 30/186 (16%)
Query: 17 RKREEEEEKSSLGRAAGVESRRR-------AGEGAAGRRDGGWGPPGGAGDHQTLQRASL 69
++ ++ ++S + G+E + R AG + GG GP G G + +R+
Sbjct: 1375 QRAKDLSKRSFSSQRPGMERQNRRPGPGGKAGSSGSSSGGGGGGPGGRTGPGRGDKRSWP 1434
Query: 70 LPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPLGHG-----------LRPRPPPG 118
P + +ER P L PP PP + H L R
Sbjct: 1435 SPKNRSRPPEERPPGL----PLPPPPPSSSAVFRLDQVIHSNPAGIQQALAQLSSRQGSV 1490
Query: 119 TPP---PRCPRTLAPGPRGLFPAPPP--APARTGPAGKAAADRGRPGP---AAGRRVRRS 170
T P PR L P+G P PP P R + PGP G R S
Sbjct: 1491 TAPGGHPRHKPGLPQAPQGPSPRPPTRYEPQRVNSGLSSDPHFEEPGPMVRGVGGTPRDS 1550
Query: 171 PSFPPF 176
PF
Sbjct: 1551 AGVSPF 1556
Score = 33.1 bits (74), Expect = 0.27
Identities = 31/94 (32%), Positives = 36/94 (38%), Gaps = 16/94 (17%)
Query: 97 RQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPR-----------GLFPAPPPAPAR 145
RQ LP+P L+P G P P P L PAPPPAP
Sbjct: 1947 RQDLPSPSDFYSTPLQPGGQSGFLPSGAPAQQMLLPMVDSQLPVVNFGSLPPAPPPAPPP 2006
Query: 146 -----TGPAGKAAADRGRPGPAAGRRVRRSPSFP 174
GPA + + RP PA RV SP+ P
Sbjct: 2007 LSLLPVGPALQPPSLAVRPPPAPATRVLPSPARP 2040
Score = 30.8 bits (68), Expect = 1.3
Identities = 29/87 (33%), Positives = 30/87 (34%), Gaps = 9/87 (10%)
Query: 79 QEREPSLAARGTAPPAPPRQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGLFPA 138
Q P +G A P R P PL PP PP R P G R P
Sbjct: 1668 QRSSPDGGLKGAAEGPPKR---PGGSSPLNAVPCEGPPGSEPPRRPPPAPHDGDRKELPR 1724
Query: 139 PPPAPARTGPAG---KAAADRG-RPGP 161
P P GP G DRG PGP
Sbjct: 1725 EQPLP--PGPIGTERSQRTDRGTEPGP 1749
Score = 29.6 bits (65), Expect = 3.0
Identities = 37/143 (25%), Positives = 49/143 (34%), Gaps = 28/143 (19%)
Query: 62 QTLQRASLLPGGSADKDQEREPSLAARGTAPPAPPR----------QCLPTPCPPLGHGL 111
Q Q+ LL + Q+ + A PP+PP+ Q P P L G
Sbjct: 648 QRQQQEQLLKQQQQHQWQQHQQGSAPPTPVPPSPPQPVTLGAVPAPQAPPPPPKALYPGA 707
Query: 112 RPRPPPGTP----------PPRCPRTLAPG-------PRGLFPAPPPAPARTGPAGKAAA 154
RPPP P PP L G P G+ P+ R+ G ++
Sbjct: 708 LGRPPPMPPMNFDPRWMMIPPYVDPRLLQGRPPLDFYPPGVHPSGLVPRERSDSGGSSSE 767
Query: 155 DRGRPGPAAGRRVRRSPSFPPFL 177
R PA R R +P P L
Sbjct: 768 PFDRHAPAM-LRERGTPPVDPKL 789
Score = 29.6 bits (65), Expect = 3.0
Identities = 28/77 (36%), Positives = 31/77 (40%), Gaps = 16/77 (20%)
Query: 82 EPSLAARG---TAPPAPPRQCLPTPCPPLGH----GLRPRPPPGTPP-------PRCPRT 127
+P LA G TA PA PR L +P G+R PP PP P P
Sbjct: 786 DPKLAWVGDVFTATPAEPRP-LTSPLRQAADEDDKGMRSETPPVPPPPPYLASYPGFPEN 844
Query: 128 LAPGPR-GLFPAPPPAP 143
APGP FP P P
Sbjct: 845 GAPGPPISRFPLEEPGP 861
Score = 29.3 bits (64), Expect = 3.9
Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
Query: 116 PPGTPPPRCPRTLAP-----GPRGLFPAPPPAPARTGPAGKAAADRGRPGPAAGRRVRRS 170
PP PP P +L P P L PPPAPA + RP PA+ R
Sbjct: 1997 PPAPPPAPPPLSLLPVGPALQPPSLAVRPPPAPAT-----RVLPSPARPFPASLGRAELH 2051
Query: 171 P 171
P
Sbjct: 2052 P 2052
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 49.7 bits (117), Expect = 3e-06
Identities = 37/88 (42%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 92 PPAPPRQCLPTPCPPLGHGLRPRPPPGTPP----PRCPRTLAPGPRGLFPAPPPAPARTG 147
PPAPP L P PP G L P PPPG PP P P P PR L P PPP
Sbjct: 416 PPAPP---LRPPGPPTG--LPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPPGP 470
Query: 148 PAGKAAADRGRPGPAAGRRVRRSPSFPP 175
P G P P G R P PP
Sbjct: 471 PPGPPPGLPPGP-PPRGPPPRLPPPAPP 497
Score = 46.6 bits (109), Expect = 2e-05
Identities = 32/83 (38%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 92 PPAPPRQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPG---PRGLFPAPPPAPARTGP 148
PP PP P P P GL P PPP PPPR P PG PR PP P P
Sbjct: 459 PPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPRPGMMRPPLVP----P 514
Query: 149 AGKAAADRGRPGPAAGRRVRRSP 171
G A P P V +P
Sbjct: 515 LGPAPPGLFPPAPLPNPGVLSAP 537
Score = 45.4 bits (106), Expect = 5e-05
Identities = 37/110 (33%), Positives = 44/110 (40%), Gaps = 15/110 (13%)
Query: 77 KDQEREPSLAARGTAPPAPPRQCLPTP--CPPLGHGLRPRPPPGTPPPRCPRTLAPGPRG 134
K++ + + APP+ P+ PP+ P PPP PPP P P G
Sbjct: 375 KEESHSDGTSTASSQQQAPPQSVPPSQIQAPPM-----PGPPPLGPPPAPPLRPPGPPTG 429
Query: 135 LFPAPPP-APARTGPAGKAAADRG------RPGPAAGRRVRRSPSFPPFL 177
L P PPP AP P G RG PGP GR P PP L
Sbjct: 430 LPPGPPPGAPPFLRPPGMPGL-RGPLPRLLPPGPPPGRPPGPPPGPPPGL 478
Score = 44.7 bits (104), Expect = 9e-05
Identities = 39/108 (36%), Positives = 40/108 (37%), Gaps = 20/108 (18%)
Query: 92 PPAPPRQCLPTPCPPLGHGLR--------PRPPPGTPPPRCPRTLAPGPRGLFPAPPP-- 141
PP PP P PP GLR P PPPG PP P P GL P PPP
Sbjct: 431 PPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGP----PPGLPPGPPPRG 486
Query: 142 APARTGPAGKAAADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTGPL 189
P R P RPG + R P PP A L PL
Sbjct: 487 PPPRLPPPAPPGIPPPRPG------MMRPPLVPPLGPAPPGLFPPAPL 528
Score = 44.3 bits (103), Expect = 1e-04
Identities = 36/91 (39%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 54 PPGGAGDHQTLQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPLGHGLRP 113
PPG G L R LLP G P G P PPR P PP G+ P
Sbjct: 444 PPGMPGLRGPLPR--LLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGI-P 500
Query: 114 RPPPGTPPPRCPRTLAPGPRGLF-PAPPPAP 143
P PG P L P P GLF PAP P P
Sbjct: 501 PPRPGMMRPPLVPPLGPAPPGLFPPAPLPNP 531
Score = 36.6 bits (83), Expect = 0.024
Identities = 26/75 (34%), Positives = 27/75 (36%), Gaps = 13/75 (17%)
Query: 115 PPPGTPPPRCPRTLAPGPRGLFPAPPPAPARTGPAGKAAADRGRPGPAAGRRVRRSPSFP 174
PP PP + PGP L P P P P R PGP G P P
Sbjct: 393 PPQSVPPSQIQAPPMPGPPPLGPPPAP-PLRP------------PGPPTGLPPGPPPGAP 439
Query: 175 PFLLAQTRLGRTGPL 189
PFL G GPL
Sbjct: 440 PFLRPPGMPGLRGPL 454
Score = 33.5 bits (75), Expect = 0.21
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 12/60 (20%)
Query: 82 EPSLAARGTAPPAPPRQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGLFPAPPP 141
+P + T+ PP + + P LGHG+ PR PPG PP P PGP PPP
Sbjct: 162 QPPSILKKTSAYGPPTRAVSI-LPLLGHGV-PRLPPGRKPPGPP----PGP------PPP 209
>gi|117938759 GNAS complex locus XLas [Homo sapiens]
Length = 1037
Score = 49.3 bits (116), Expect = 4e-06
Identities = 57/188 (30%), Positives = 63/188 (33%), Gaps = 24/188 (12%)
Query: 10 EGPRVGVR----KREEEEEKSSLGRAAGVESRRRAGEGAAGRRDGGWGPPGGAGDHQTLQ 65
+GP + V KRE E AA +E A EG G P GA T
Sbjct: 333 DGPPIKVSGAPDKRERAERPPVEEEAAEMEGAADAAEGGKVPSPGYGSPAAGAASADTAA 392
Query: 66 RASLLPGGSADKDQEREPSLAARGTAPPAPPRQCL-------PTPCPPL--GHGLRPRPP 116
RA+ P AD D P GTAP P P P G P P
Sbjct: 393 RAA--PAAPADPDSGATPEDPDSGTAPADPDSGAFAADPDSGAAPAAPADPDSGAAPDAP 450
Query: 117 PGTPPPRCPRTLAPGPRGLFPAPPPAPA----RTGPAGKAAADRGRP-GPAA----GRRV 167
P A G P P APA R AA D G P PAA +V
Sbjct: 451 ADPDSGAAPDAPADPDAGAAPEAPAAPAAAETRAAHVAPAAPDAGAPTAPAASATRAAQV 510
Query: 168 RRSPSFPP 175
RR+ S P
Sbjct: 511 RRAASAAP 518
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 48.9 bits (115), Expect = 5e-06
Identities = 26/68 (38%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 92 PPAPPRQCLPTPCPPLGHGLRPRPP-------PGTPPPRCPRTLAPGP--RGLFPAPPPA 142
PP PP P P P G G P PP P PPP P P P ++P PPPA
Sbjct: 290 PPPPPHNSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPSVAVPPPPPNRMYPPPPPA 349
Query: 143 PARTGPAG 150
+ P+G
Sbjct: 350 LPSSAPSG 357
Score = 48.1 bits (113), Expect = 8e-06
Identities = 34/88 (38%), Positives = 37/88 (42%), Gaps = 14/88 (15%)
Query: 88 RGTAPPAPPRQCLPTPCPPLGHGLRPRPPP----GTPPP---RCPRTLAPGP---RGLFP 137
R PP PP + P P PP H P PPP G PPP R P P P R
Sbjct: 274 RQAPPPPPPSRGGPPPPPPPPHNSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPSVA 333
Query: 138 APPPAPAR----TGPAGKAAADRGRPGP 161
PPP P R PA ++A G P P
Sbjct: 334 VPPPPPNRMYPPPPPALPSSAPSGPPPP 361
Score = 45.4 bits (106), Expect = 5e-05
Identities = 33/100 (33%), Positives = 37/100 (37%), Gaps = 10/100 (10%)
Query: 49 DGGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPLG 108
+ G PP G S P + PS+A PP PP + P P P L
Sbjct: 296 NSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPSVAV----PPPPPNRMYPPPPPAL- 350
Query: 109 HGLRPRPPPGTPPPRCPRTLAPGPRGLFPAPPPAPARTGP 148
P P PPP P L GP P PPP P GP
Sbjct: 351 ----PSSAPSGPPPPPPSVLGVGPVAP-PPPPPPPPPPGP 385
Score = 43.5 bits (101), Expect = 2e-04
Identities = 30/88 (34%), Positives = 32/88 (36%), Gaps = 13/88 (14%)
Query: 83 PSLAARGTAPPAPPRQCLPTPCPPLGHGLRPR-----PPPGT----PPPRCPRTLAPGPR 133
P ARG P PP PT PP RP PPP PPP P + GP
Sbjct: 300 PPPPARGRGAPPPPPSRAPTAAPPPPPPSRPSVAVPPPPPNRMYPPPPPALPSSAPSGP- 358
Query: 134 GLFPAPPPAPARTGPAGKAAADRGRPGP 161
P PPP+ GP P P
Sbjct: 359 ---PPPPPSVLGVGPVAPPPPPPPPPPP 383
Score = 40.8 bits (94), Expect = 0.001
Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 111 LRPRPPPGTPPPRCPRTLAPGPRGLFPAPPPAPARTGPAGKAAADRGRPGPAAGRRVRRS 170
LR + PP PP R GP P PPP P +GP A RG P P R +
Sbjct: 272 LRRQAPPPPPPSR------GGP----PPPPPPPHNSGPPPPPARGRGAPPPPPSRAPTAA 321
Query: 171 PSFPP 175
P PP
Sbjct: 322 PPPPP 326
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 48.9 bits (115), Expect = 5e-06
Identities = 43/136 (31%), Positives = 52/136 (38%), Gaps = 16/136 (11%)
Query: 66 RASLLPGGSADKDQEREPS-LAARGTAPPAPPRQC---LPTPCPPLGHGLR------PRP 115
R + L GGS + S + R PP P R P P PP+G+ P P
Sbjct: 226 RGTALGGGSIRQSPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPP 285
Query: 116 PPGTPPPRCPRTLAPGPRGLFPAPPPAPARTGPAGKAAADRGRPGP--AAGRRVRRSPSF 173
PP P P T P P PPP P+R GP + G R + S S
Sbjct: 286 PPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSST 345
Query: 174 PPFLLAQTRLGRTGPL 189
PP GR+GPL
Sbjct: 346 PPL----PSPGRSGPL 357
Score = 45.1 bits (105), Expect = 7e-05
Identities = 50/177 (28%), Positives = 61/177 (34%), Gaps = 48/177 (27%)
Query: 41 GEGAAGRRDGGWGPPGGAGDHQ--------TLQRAS---------LLPGGSADKDQEREP 83
G G G GG GPPG G Q T R + L PGG + + P
Sbjct: 84 GGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSGGSRPPLLPPGGRSTSAKPFSP 143
Query: 84 SLA---------ARGTAPPAPPRQCLPTPCPPLGHGLRPRPPP---------------GT 119
+ PP P R +P P P +G PPP G+
Sbjct: 144 PSGPGRFPVPSPGHRSGPPEPQRNRMPPPRPDVGSKPDSIPPPVPSTPRPIQSSPHNRGS 203
Query: 120 PP-PRCPRTLAPGPRGLFPAPPPAPARTGPAGKAAADRGRPGPAAGRRVRRSPSFPP 175
PP P PR +PG P PPP P G A + R P ++ R P PP
Sbjct: 204 PPVPGGPRQPSPG-----PTPPPFPGNRGTALGGGSIRQSPLSSSSPFSNR-PPLPP 254
Score = 44.7 bits (104), Expect = 9e-05
Identities = 51/164 (31%), Positives = 62/164 (37%), Gaps = 21/164 (12%)
Query: 34 VESRRRAGEGAAGRRDGGWGP-PGGAGDHQTLQRASLLPGGSADKDQEREPSLAAR---- 88
++ + AG G G GG G GG G P G Q P L +
Sbjct: 59 LDKPKGAGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRD 118
Query: 89 ----GTAPPAPP---RQCLPTP-CPPLGHGLRPRPPPG--TPPPRCPRTLAPGPR---GL 135
G+ PP P R P PP G G P P PG + PP R P PR G
Sbjct: 119 NDSGGSRPPLLPPGGRSTSAKPFSPPSGPGRFPVPSPGHRSGPPEPQRNRMPPPRPDVGS 178
Query: 136 FP--APPPAPARTGPAGKAAADRGRPG-PAAGRRVRRSPSFPPF 176
P PPP P+ P + +RG P P R+ P+ PPF
Sbjct: 179 KPDSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQPSPGPTPPPF 222
Score = 40.8 bits (94), Expect = 0.001
Identities = 37/152 (24%), Positives = 51/152 (33%), Gaps = 31/152 (20%)
Query: 54 PPGGAGDHQTLQRASLLP----GGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPLGH 109
PP G+ ++ R ++ P PS +++ PP PP + P P PP
Sbjct: 267 PPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSS 326
Query: 110 G--------------------------LRPRPPPGTPPPRCPRTLAPGPRGLFPAPPPAP 143
G P PPP + P P PG G P PPP
Sbjct: 327 GNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPPV- 385
Query: 144 ARTGPAGKAAADRGRPGPAAGRRVRRSPSFPP 175
+R G +A + +G RS PP
Sbjct: 386 SRNGSTSRALPATPQLPSRSGVDSPRSGPRPP 417
Score = 32.0 bits (71), Expect = 0.60
Identities = 36/119 (30%), Positives = 42/119 (35%), Gaps = 31/119 (26%)
Query: 54 PPGGAGDHQT--LQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPC--PPLGH 109
PP +G+ +T L + +L S PS G PP PP + P P PP
Sbjct: 322 PPSSSGNDETPRLPQRNL----SLSSSTPPLPSPGRSGPLPP-PPSERPPPPVRDPPGRS 376
Query: 110 GLRPRPPP---------------------GTPPPRC-PRTLAPGPRGLFPAPPPAPART 146
G P PPP G PR PR P R APPP P T
Sbjct: 377 GPLPPPPPVSRNGSTSRALPATPQLPSRSGVDSPRSGPRPPLPPDRPSAGAPPPPPPST 435
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 48.9 bits (115), Expect = 5e-06
Identities = 43/136 (31%), Positives = 52/136 (38%), Gaps = 16/136 (11%)
Query: 66 RASLLPGGSADKDQEREPS-LAARGTAPPAPPRQC---LPTPCPPLGHGLR------PRP 115
R + L GGS + S + R PP P R P P PP+G+ P P
Sbjct: 226 RGTALGGGSIRQSPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPP 285
Query: 116 PPGTPPPRCPRTLAPGPRGLFPAPPPAPARTGPAGKAAADRGRPGP--AAGRRVRRSPSF 173
PP P P T P P PPP P+R GP + G R + S S
Sbjct: 286 PPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSST 345
Query: 174 PPFLLAQTRLGRTGPL 189
PP GR+GPL
Sbjct: 346 PPL----PSPGRSGPL 357
Score = 45.1 bits (105), Expect = 7e-05
Identities = 50/177 (28%), Positives = 61/177 (34%), Gaps = 48/177 (27%)
Query: 41 GEGAAGRRDGGWGPPGGAGDHQ--------TLQRAS---------LLPGGSADKDQEREP 83
G G G GG GPPG G Q T R + L PGG + + P
Sbjct: 84 GGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSGGSRPPLLPPGGRSTSAKPFSP 143
Query: 84 SLA---------ARGTAPPAPPRQCLPTPCPPLGHGLRPRPPP---------------GT 119
+ PP P R +P P P +G PPP G+
Sbjct: 144 PSGPGRFPVPSPGHRSGPPEPQRNRMPPPRPDVGSKPDSIPPPVPSTPRPIQSSPHNRGS 203
Query: 120 PP-PRCPRTLAPGPRGLFPAPPPAPARTGPAGKAAADRGRPGPAAGRRVRRSPSFPP 175
PP P PR +PG P PPP P G A + R P ++ R P PP
Sbjct: 204 PPVPGGPRQPSPG-----PTPPPFPGNRGTALGGGSIRQSPLSSSSPFSNR-PPLPP 254
Score = 44.7 bits (104), Expect = 9e-05
Identities = 51/164 (31%), Positives = 62/164 (37%), Gaps = 21/164 (12%)
Query: 34 VESRRRAGEGAAGRRDGGWGP-PGGAGDHQTLQRASLLPGGSADKDQEREPSLAAR---- 88
++ + AG G G GG G GG G P G Q P L +
Sbjct: 59 LDKPKGAGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRD 118
Query: 89 ----GTAPPAPP---RQCLPTP-CPPLGHGLRPRPPPG--TPPPRCPRTLAPGPR---GL 135
G+ PP P R P PP G G P P PG + PP R P PR G
Sbjct: 119 NDSGGSRPPLLPPGGRSTSAKPFSPPSGPGRFPVPSPGHRSGPPEPQRNRMPPPRPDVGS 178
Query: 136 FP--APPPAPARTGPAGKAAADRGRPG-PAAGRRVRRSPSFPPF 176
P PPP P+ P + +RG P P R+ P+ PPF
Sbjct: 179 KPDSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQPSPGPTPPPF 222
Score = 40.8 bits (94), Expect = 0.001
Identities = 37/152 (24%), Positives = 51/152 (33%), Gaps = 31/152 (20%)
Query: 54 PPGGAGDHQTLQRASLLP----GGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPLGH 109
PP G+ ++ R ++ P PS +++ PP PP + P P PP
Sbjct: 267 PPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSS 326
Query: 110 G--------------------------LRPRPPPGTPPPRCPRTLAPGPRGLFPAPPPAP 143
G P PPP + P P PG G P PPP
Sbjct: 327 GNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPPV- 385
Query: 144 ARTGPAGKAAADRGRPGPAAGRRVRRSPSFPP 175
+R G +A + +G RS PP
Sbjct: 386 SRNGSTSRALPATPQLPSRSGVDSPRSGPRPP 417
Score = 32.0 bits (71), Expect = 0.60
Identities = 36/119 (30%), Positives = 42/119 (35%), Gaps = 31/119 (26%)
Query: 54 PPGGAGDHQT--LQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPC--PPLGH 109
PP +G+ +T L + +L S PS G PP PP + P P PP
Sbjct: 322 PPSSSGNDETPRLPQRNL----SLSSSTPPLPSPGRSGPLPP-PPSERPPPPVRDPPGRS 376
Query: 110 GLRPRPPP---------------------GTPPPRC-PRTLAPGPRGLFPAPPPAPART 146
G P PPP G PR PR P R APPP P T
Sbjct: 377 GPLPPPPPVSRNGSTSRALPATPQLPSRSGVDSPRSGPRPPLPPDRPSAGAPPPPPPST 435
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 48.9 bits (115), Expect = 5e-06
Identities = 86/303 (28%), Positives = 104/303 (34%), Gaps = 70/303 (23%)
Query: 7 LRKEGPRVGVRKREEEEEKSSLGRAA----GVESRRR-------AGEGAA-------GRR 48
L + G V + EEEEE SS G + G SRR + EGA G
Sbjct: 658 LGERGTAPWVEEEEEEEEGSSPGEDSSSLGGGPSRRGPLPCPLCSREGACSCLPLERGDA 717
Query: 49 DGGWGPPGGAG-DHQTLQRASLLPGGSADKDQEREPSLAARGTAPPA--PPRQCLPTPCP 105
GWG G H +SL A++ + +A +APP P P
Sbjct: 718 VAGWGGHPALGCPHPPEDDSSL----RAERGSLADLPMAPPASAPPEFLDPLMGAAAPQY 773
Query: 106 PLGHGLRPRPPPGTPPPRCPRTLA----------------------PGPRGLFPAPPPAP 143
P G G P PPP PPPR P A PG G P +P
Sbjct: 774 P-GRGPPPAPPPPPPPPRAPADPAASPDPPSAVASPGSGLSSPGPKPGDSGYETETPFSP 832
Query: 144 ARTGPAGKAAADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLLLLHGAMR- 202
P G AA + G P P R+P PP A GPL L G
Sbjct: 833 EGAFPGGGAAEEEGVPRP-------RAPPEPPDPGAPRPPPDPGPLP------LPGPREK 879
Query: 203 ---LGGGSREKLACGRAGRAARTGRGEGGRRAEEEAAGRRRRRRPGRTRGIPRAAGGLSR 259
+ S E+L R GE G A E R+ R PG +P GL+R
Sbjct: 880 PTFVVQVSTEQLLMSLREDVTRNLLGEKGATA-RETGPRKAGRGPGNREKVP----GLNR 934
Query: 260 AGT 262
T
Sbjct: 935 DPT 937
Score = 42.7 bits (99), Expect = 3e-04
Identities = 77/284 (27%), Positives = 90/284 (31%), Gaps = 71/284 (25%)
Query: 21 EEEEKSSLGRA---AGVESRRRAGEGAAGRRDGGWGPPGGAGDHQTLQRASLLPGGSADK 77
E ++SL RA + V S R GE A G P G A + TL+ PG
Sbjct: 1074 EPAPETSLERAPAPSAVVSSRNGGETAPG-------PLGPAPKNGTLE-----PG----- 1116
Query: 78 DQEREPSLAARGTAPPAPPRQCLPTPCPPLGHGLRPRPPPGT----------------PP 121
+ R P AP A P+G G P PG+ PP
Sbjct: 1117 TERRAPETGGAPRAPGAGRLDLGSGGRAPVGTGTAPGGGPGSGVDAKAGWVDNTRPQPPP 1176
Query: 122 PRCPRTLAPGPRGLFPAPPPAPARTGPAGKAAADRGRPGPAAG--------RRVRRSPSF 173
P P PR L PAPP A P G+ A R G + R+ P
Sbjct: 1177 PPLPPPPEAQPRRLEPAPPRARPEVAPEGEPGAPDSRAGGDTALSGDGDPPKPERKGPEM 1236
Query: 174 PPFLL-----------AQTRLGRTGPLALCLLLLL----HGAMR-------LGGGSREKL 211
P L + RL R LAL L L G R G E
Sbjct: 1237 PRLFLDLGPPQGNSEQIKARLSRLS-LALPPLTLTPFPGPGPRRPPWEGADAGAAGGEAG 1295
Query: 212 ACGRAGRAARTGRGEGGRRAEEEAA----GRRRRRRPGRTRGIP 251
G G A G E E+E A R PGR R P
Sbjct: 1296 GAGAPGPAEEDGEDEDEDEEEDEEAAAPGAAAGPRGPGRARAAP 1339
Score = 37.4 bits (85), Expect = 0.014
Identities = 43/157 (27%), Positives = 62/157 (39%), Gaps = 32/157 (20%)
Query: 35 ESRRRAGEGA-AGRRDGGWGPPGGAGD-----HQTLQRASLLPGGSADKDQEREPSLAA- 87
++RR AG G A PP + ++ L S+LP SA R PS+++
Sbjct: 512 KARRGAGRGGGAPAWQPASAPPAPHANPSNPFYEALSTPSVLPVISA-----RSPSVSSE 566
Query: 88 ---RGTAPPAPPRQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPR--------GLF 136
R +PP P PL PG P P+ P+ + P+ LF
Sbjct: 567 YYIRLEEHGSPPEPLFPNDWDPLD--------PGVPAPQAPQAPSEVPQLVSETWASPLF 618
Query: 137 PAPPPAPARTGPAGKAAADRGRP-GPAAGRRVRRSPS 172
PAP P PA++ +G P G AG + P+
Sbjct: 619 PAPRPFPAQSSASGSFLLSGWDPEGRGAGETLAGDPA 655
Score = 31.6 bits (70), Expect = 0.78
Identities = 42/161 (26%), Positives = 51/161 (31%), Gaps = 8/161 (4%)
Query: 20 EEEEEKSSLGRAAGVESRRRAGEGAAGRRD-----GGWGPPGGAGDHQTLQRASLLPGGS 74
E+ E +LG E GE RR+ G AG+ + L L P S
Sbjct: 970 EKAAENGALGSPEREEKVLENGELTPPRREEKALENGELRSPEAGE-KVLVNGGLTPPKS 1028
Query: 75 ADKDQEREPSLAARGTA-PPAPPRQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPR 133
DK E R T PP P P P P G P P AP P
Sbjct: 1029 EDKVSENGGLRFPRNTERPPETGPWRAPGPWEKTPESWGPAPTIGEPAPETSLERAPAPS 1088
Query: 134 GLFPAPPPAPARTGPAGKAAADRGRPGPAAGRRVRRSPSFP 174
+ + GP G A + G P RR + P
Sbjct: 1089 AVVSSRNGGETAPGPLGPAPKN-GTLEPGTERRAPETGGAP 1128
Score = 29.3 bits (64), Expect = 3.9
Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 10/36 (27%)
Query: 113 PRPPPGTPPPRCPRTLAPGPRGLFPAPPPAPARTGP 148
PRPPP PPPR G FP P P PA + P
Sbjct: 446 PRPPPPPPPPR---------DGPFPWPWP-PAHSAP 471
Score = 28.5 bits (62), Expect = 6.6
Identities = 23/71 (32%), Positives = 24/71 (33%), Gaps = 13/71 (18%)
Query: 91 APPAPPRQCLPT---PCPPLGHG--------LRPRPPPGTPPPRCPRTLAPGPRGLFPAP 139
APP PP P P G G PPPG PP C + P P P
Sbjct: 1417 APPTPPHPATPGDGFPSNDSGFGGSFEWAEDFPLLPPPG--PPLCFSRFSVSPALETPGP 1474
Query: 140 PPAPARTGPAG 150
P PAG
Sbjct: 1475 PARAPDARPAG 1485
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 48.5 bits (114), Expect = 6e-06
Identities = 34/103 (33%), Positives = 42/103 (40%), Gaps = 14/103 (13%)
Query: 72 GGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPLGHGLRPRPPPGTPPPRCP---RTL 128
GG + P+ PPAPP+Q P P PP P P PG PP+ P L
Sbjct: 7 GGRPGESPGATPAPGPPPPPPPAPPQQQPPPPPPPA-----PPPGPGPAPPQHPPRAEAL 61
Query: 129 AP------GPRGLFPAPPPAPARTGPAGKAAADRGRPGPAAGR 165
P GPRG + + R G G A+ +G P GR
Sbjct: 62 PPEAADEGGPRGRLRSRDSSCGRPGTPGAASTAKGSPNGECGR 104
Score = 45.1 bits (105), Expect = 7e-05
Identities = 54/187 (28%), Positives = 62/187 (33%), Gaps = 37/187 (19%)
Query: 89 GTAPPAPPRQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGLFPAPPPAPARTGP 148
G +P A P P P PP +P PPP PP PGP PAPP P R
Sbjct: 11 GESPGATPAPGPPPPPPPAPPQQQPPPPPPPAPP-------PGPG---PAPPQHPPRAEA 60
Query: 149 AGKAAADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLLLLHGAMRLGGGSR 208
AAD G GP R R S P + P C G G
Sbjct: 61 LPPEAADEG--GPRGRLRSRDSSCGRPGTPGAASTAKGSPNGEC-----------GRGEP 107
Query: 209 EKLACGRAG-----------RAARTGRGEGGRRAEE---EAAGRRRRRRPGRTRGIPRAA 254
+ G G R A +G G AEE E AG R + + R
Sbjct: 108 QCSPAGPEGPARGPKVSFSCRGAASGPAPGPGPAEEAGSEEAGPAGEPRGSQASFMQRQF 167
Query: 255 GGLSRAG 261
G L + G
Sbjct: 168 GALLQPG 174
Score = 37.7 bits (86), Expect = 0.011
Identities = 27/69 (39%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Query: 108 GHGLRPRPPPG-TPPPRCPRTLAPGPRGLFPAPPPAPARTGPAGKAAADRGRPGPAAGRR 166
G G RP PG TP P P P P P PPP PA P G PGPA +
Sbjct: 5 GGGGRPGESPGATPAPGPPPPPPPAPPQQQPPPPPPPA--PPPG--------PGPAPPQH 54
Query: 167 VRRSPSFPP 175
R+ + PP
Sbjct: 55 PPRAEALPP 63
Score = 36.2 bits (82), Expect = 0.032
Identities = 49/202 (24%), Positives = 70/202 (34%), Gaps = 23/202 (11%)
Query: 76 DKDQEREPSLAAR-GTAPPAPPRQCLPTP------------CPPLGHGLRPRPPPGTPPP 122
D++ ++ L R G PP PP + + CP + L P P
Sbjct: 698 DREMVQQAELGQRVGLFPPPPPPPQVTSAIATLQQAAAMSFCPQVARPLVG--PLALGSP 755
Query: 123 RCPRTLAPGPRGLFPAPPPAPARTGPAGKAAADRGRPGPAAGRRVRRSPSFPPFLLAQTR 182
R R PGP +P P P + P A+ R P G + +P P L A+
Sbjct: 756 RLVRRPPPGPAPAAASPGPPPPASPPGAPASPRAPRTSPYGG--LPAAPLAGPALPARRL 813
Query: 183 LGRTGPLALCLLLLLHGAMRLGGGSREKLACGRAGRAARTGRGEGGRRAEEEAAGRRRRR 242
+ PL+ L HGA G + + A R T RA + RR
Sbjct: 814 SRASRPLSASQPSLPHGAP--GPAASTRPASSSTPRLGPT----PAARAAAPSPDRRDSA 867
Query: 243 RPGRTRGIPRAAGGLSRAGTRV 264
PG G+ SR + +
Sbjct: 868 SPGAAGGLDPQDSARSRLSSNL 889
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 48.5 bits (114), Expect = 6e-06
Identities = 67/237 (28%), Positives = 79/237 (33%), Gaps = 57/237 (24%)
Query: 39 RAGEGAAGRRDGGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQ 98
R +G G DG GPPG G GG +K + E P PP +
Sbjct: 1239 RGPQGPNGA-DGPQGPPGSVGS----------VGGVGEKGEPGE-------AGNPGPPGE 1280
Query: 99 C-LPTPCPPLGHGLRPRPPPGTPPPRCPRTLA-------PGPRGLFPAPPPAPARTGPAG 150
+ P G PP PP PGP G FP P P GPAG
Sbjct: 1281 AGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVG-FPGDPGPPGEPGPAG 1339
Query: 151 KAA--------ADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLLLLHGAMR 202
+ D G+PGP G P PP G+ GP GA
Sbjct: 1340 QDGVGGDKGEDGDPGQPGP-PGPSGEAGPPGPP--------GKRGP---------PGAAG 1381
Query: 203 LGGGSREKLACGRAGRAARTGR----GEGGRRAEEEAAGRRRRRRPGRTRGIPRAAG 255
G EK A G AG G+ G G + G R P +G+P AAG
Sbjct: 1382 AEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAG 1438
Score = 42.4 bits (98), Expect = 4e-04
Identities = 70/284 (24%), Positives = 93/284 (32%), Gaps = 51/284 (17%)
Query: 11 GPRVGVRKREEEEEKSSLGRAAGVESRRRAGEGAAGRRDGGWGPPGGAGDHQTLQRASLL 70
GP E+ +K +G S+ GE G GP G G +
Sbjct: 1126 GPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPG----------I 1175
Query: 71 PGGSADKDQEREPSL-------AARGTAPPAPPRQCLPTPCPPLGHG----LRPRPPPGT 119
GG + + + ARG P P P PP G + P PPG
Sbjct: 1176 AGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGP 1235
Query: 120 PPPRCPR--TLAPGPRGLFPAPPPAPARTGPAGKAA--ADRGRPGPAA--------GRRV 167
P PR P+ A GP+G PP + G G+ + G PGP G R
Sbjct: 1236 PGPRGPQGPNGADGPQG----PPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERG 1291
Query: 168 RRSPSFPPFLL----AQTRLGRTGPLALCLLLLLHGAMRLGGGSREKLACGRAGRAARTG 223
+ + PP A+ G GP G + G G AG+ G
Sbjct: 1292 EKGEAGPPGAAGPPGAKGPPGDDGPKG------NPGPVGFPGDPGPPGEPGPAGQDGVGG 1345
Query: 224 ----RGEGGRRAEEEAAGRRRRRRPGRTRGIPRAAGGLSRAGTR 263
G+ G+ +G P RG P AAG R G +
Sbjct: 1346 DKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEK 1389
Score = 38.1 bits (87), Expect = 0.008
Identities = 72/281 (25%), Positives = 91/281 (32%), Gaps = 57/281 (20%)
Query: 9 KEGPRVGVRKREEEEEKSSLGRAAGVESRRRAGEGAAGRRDGGWGPPGGAGDH--QTLQR 66
++G R K ++ G +R G+ GG GPPG G+ Q Q
Sbjct: 878 EKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQG 937
Query: 67 ASLLPG-----GSADKD-------QEREPSLAARGTAPPAPPRQCLPTPCPPLGH----G 110
PG G KD Q E + T PP P + P P G G
Sbjct: 938 PVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGK-TGPPGPGG--VVGPQGPTGETGPIG 994
Query: 111 LRPRPPPGTPPPRCPRTLAPGPRGL--FPAPPPAPARTGPAGKAA--ADRGRPGP--AAG 164
R P P PP A G G P P + GPAG +RG PG A G
Sbjct: 995 ERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPG 1054
Query: 165 RRVRRSPSFPPFLLAQTRLGRTGPLALCLLLLLHGAMRLGGGSREKLACGRAGRAARTGR 224
+ P PP GP+ G E+ + G AG GR
Sbjct: 1055 LKGGEGPQGPP-----------GPV---------------GSPGERGSAGTAGPIGLPGR 1088
Query: 225 ----GEGGRRAEEEAAGRRRRRRPGRTRGIPRAAGGLSRAG 261
G G E+ A G + + P G+ G AG
Sbjct: 1089 PGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAG 1129
Score = 37.7 bits (86), Expect = 0.011
Identities = 65/238 (27%), Positives = 79/238 (33%), Gaps = 55/238 (23%)
Query: 43 GAAGRRDGGWGPPGGAGDHQTLQRASL--LPGGSADKDQEREPSLAARGTAPPAPP---- 96
GAAG+ +G G PG G A L PG + P L G P PP
Sbjct: 1012 GAAGK-EGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKG-GEGPQGPPGPVG 1069
Query: 97 ----RQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGL--------FPAPPPAPA 144
R T P GL RP P PP APG +G P P
Sbjct: 1070 SPGERGSAGTAGPI---GLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPG 1126
Query: 145 RTGPAGKAAADR-----GRPGP--AAGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLLLL 197
GPAG D G PG + G + P PP G GP+
Sbjct: 1127 PAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPP--------GLQGPV-------- 1170
Query: 198 HGAMRLGGGSREKLACGRAGRAARTGRGEGGRRAEEEAAGRRRRRRPGRTRGIPRAAG 255
GA + GG E R +G G++ +E A G P +G+P G
Sbjct: 1171 -GAPGIAGGDGEP--------GPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPG 1219
Score = 37.7 bits (86), Expect = 0.011
Identities = 42/132 (31%), Positives = 49/132 (37%), Gaps = 35/132 (26%)
Query: 43 GAAGRRD--GGWGPPG-----------GAGDHQTLQRASLLPGGSADKDQEREPSLAARG 89
GAAG+ G GPPG G H L PG +K P
Sbjct: 1435 GAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQG-- 1492
Query: 90 TAPPAPPRQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGLFPAPPPAPARTGPA 149
+P A +P P PLG P PPG P P+ GP+G TGPA
Sbjct: 1493 -SPGAKGDGGIPGPAGPLG----PPGPPGLPGPQ-------GPKG-------NKGSTGPA 1533
Query: 150 GKAAADRGRPGP 161
G+ D G PGP
Sbjct: 1534 GQ-KGDSGLPGP 1544
Score = 32.7 bits (73), Expect = 0.35
Identities = 39/135 (28%), Positives = 47/135 (34%), Gaps = 22/135 (16%)
Query: 53 GPPGGAGDHQT-----LQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPL 107
GPPG AG LQ + PG D+ P L P PP L P
Sbjct: 454 GPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPG-ADGLPGPPGTMLMLPFRYG 512
Query: 108 GHGLRPRPPPGTPPPRCPRTLA---------PGPRGLF--PAPPPAPARTGPAGKAAADR 156
G G + P + L PGP GL P P P +G G++
Sbjct: 513 GDGSKG-PTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGES---- 567
Query: 157 GRPGPAAGRRVRRSP 171
G PGP R V+ P
Sbjct: 568 GDPGPQGPRGVQGPP 582
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 48.5 bits (114), Expect = 6e-06
Identities = 67/237 (28%), Positives = 79/237 (33%), Gaps = 57/237 (24%)
Query: 39 RAGEGAAGRRDGGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQ 98
R +G G DG GPPG G GG +K + E P PP +
Sbjct: 1188 RGPQGPNGA-DGPQGPPGSVGS----------VGGVGEKGEPGE-------AGNPGPPGE 1229
Query: 99 C-LPTPCPPLGHGLRPRPPPGTPPPRCPRTLA-------PGPRGLFPAPPPAPARTGPAG 150
+ P G PP PP PGP G FP P P GPAG
Sbjct: 1230 AGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVG-FPGDPGPPGEPGPAG 1288
Query: 151 KAA--------ADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLLLLHGAMR 202
+ D G+PGP G P PP G+ GP GA
Sbjct: 1289 QDGVGGDKGEDGDPGQPGP-PGPSGEAGPPGPP--------GKRGP---------PGAAG 1330
Query: 203 LGGGSREKLACGRAGRAARTGR----GEGGRRAEEEAAGRRRRRRPGRTRGIPRAAG 255
G EK A G AG G+ G G + G R P +G+P AAG
Sbjct: 1331 AEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAG 1387
Score = 42.4 bits (98), Expect = 4e-04
Identities = 70/284 (24%), Positives = 93/284 (32%), Gaps = 51/284 (17%)
Query: 11 GPRVGVRKREEEEEKSSLGRAAGVESRRRAGEGAAGRRDGGWGPPGGAGDHQTLQRASLL 70
GP E+ +K +G S+ GE G GP G G +
Sbjct: 1075 GPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPG----------I 1124
Query: 71 PGGSADKDQEREPSL-------AARGTAPPAPPRQCLPTPCPPLGHG----LRPRPPPGT 119
GG + + + ARG P P P PP G + P PPG
Sbjct: 1125 AGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGP 1184
Query: 120 PPPRCPR--TLAPGPRGLFPAPPPAPARTGPAGKAA--ADRGRPGPAA--------GRRV 167
P PR P+ A GP+G PP + G G+ + G PGP G R
Sbjct: 1185 PGPRGPQGPNGADGPQG----PPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERG 1240
Query: 168 RRSPSFPPFLL----AQTRLGRTGPLALCLLLLLHGAMRLGGGSREKLACGRAGRAARTG 223
+ + PP A+ G GP G + G G AG+ G
Sbjct: 1241 EKGEAGPPGAAGPPGAKGPPGDDGPKG------NPGPVGFPGDPGPPGEPGPAGQDGVGG 1294
Query: 224 ----RGEGGRRAEEEAAGRRRRRRPGRTRGIPRAAGGLSRAGTR 263
G+ G+ +G P RG P AAG R G +
Sbjct: 1295 DKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEK 1338
Score = 38.1 bits (87), Expect = 0.008
Identities = 72/281 (25%), Positives = 91/281 (32%), Gaps = 57/281 (20%)
Query: 9 KEGPRVGVRKREEEEEKSSLGRAAGVESRRRAGEGAAGRRDGGWGPPGGAGDH--QTLQR 66
++G R K ++ G +R G+ GG GPPG G+ Q Q
Sbjct: 827 EKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQG 886
Query: 67 ASLLPG-----GSADKD-------QEREPSLAARGTAPPAPPRQCLPTPCPPLGH----G 110
PG G KD Q E + T PP P + P P G G
Sbjct: 887 PVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGK-TGPPGPGG--VVGPQGPTGETGPIG 943
Query: 111 LRPRPPPGTPPPRCPRTLAPGPRGL--FPAPPPAPARTGPAGKAA--ADRGRPGP--AAG 164
R P P PP A G G P P + GPAG +RG PG A G
Sbjct: 944 ERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPG 1003
Query: 165 RRVRRSPSFPPFLLAQTRLGRTGPLALCLLLLLHGAMRLGGGSREKLACGRAGRAARTGR 224
+ P PP GP+ G E+ + G AG GR
Sbjct: 1004 LKGGEGPQGPP-----------GPV---------------GSPGERGSAGTAGPIGLPGR 1037
Query: 225 ----GEGGRRAEEEAAGRRRRRRPGRTRGIPRAAGGLSRAG 261
G G E+ A G + + P G+ G AG
Sbjct: 1038 PGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAG 1078
Score = 37.7 bits (86), Expect = 0.011
Identities = 65/238 (27%), Positives = 79/238 (33%), Gaps = 55/238 (23%)
Query: 43 GAAGRRDGGWGPPGGAGDHQTLQRASL--LPGGSADKDQEREPSLAARGTAPPAPP---- 96
GAAG+ +G G PG G A L PG + P L G P PP
Sbjct: 961 GAAGK-EGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKG-GEGPQGPPGPVG 1018
Query: 97 ----RQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGL--------FPAPPPAPA 144
R T P GL RP P PP APG +G P P
Sbjct: 1019 SPGERGSAGTAGPI---GLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPG 1075
Query: 145 RTGPAGKAAADR-----GRPGP--AAGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLLLL 197
GPAG D G PG + G + P PP G GP+
Sbjct: 1076 PAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPP--------GLQGPV-------- 1119
Query: 198 HGAMRLGGGSREKLACGRAGRAARTGRGEGGRRAEEEAAGRRRRRRPGRTRGIPRAAG 255
GA + GG E R +G G++ +E A G P +G+P G
Sbjct: 1120 -GAPGIAGGDGEP--------GPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPG 1168
Score = 37.7 bits (86), Expect = 0.011
Identities = 42/132 (31%), Positives = 49/132 (37%), Gaps = 35/132 (26%)
Query: 43 GAAGRRD--GGWGPPG-----------GAGDHQTLQRASLLPGGSADKDQEREPSLAARG 89
GAAG+ G GPPG G H L PG +K P
Sbjct: 1384 GAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQG-- 1441
Query: 90 TAPPAPPRQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGLFPAPPPAPARTGPA 149
+P A +P P PLG P PPG P P+ GP+G TGPA
Sbjct: 1442 -SPGAKGDGGIPGPAGPLG----PPGPPGLPGPQ-------GPKG-------NKGSTGPA 1482
Query: 150 GKAAADRGRPGP 161
G+ D G PGP
Sbjct: 1483 GQ-KGDSGLPGP 1493
Score = 32.7 bits (73), Expect = 0.35
Identities = 39/135 (28%), Positives = 47/135 (34%), Gaps = 22/135 (16%)
Query: 53 GPPGGAGDHQT-----LQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPL 107
GPPG AG LQ + PG D+ P L P PP L P
Sbjct: 403 GPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPG-ADGLPGPPGTMLMLPFRYG 461
Query: 108 GHGLRPRPPPGTPPPRCPRTLA---------PGPRGLF--PAPPPAPARTGPAGKAAADR 156
G G + P + L PGP GL P P P +G G++
Sbjct: 462 GDGSKG-PTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGES---- 516
Query: 157 GRPGPAAGRRVRRSP 171
G PGP R V+ P
Sbjct: 517 GDPGPQGPRGVQGPP 531
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 48.5 bits (114), Expect = 6e-06
Identities = 67/237 (28%), Positives = 79/237 (33%), Gaps = 57/237 (24%)
Query: 39 RAGEGAAGRRDGGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQ 98
R +G G DG GPPG G GG +K + E P PP +
Sbjct: 1227 RGPQGPNGA-DGPQGPPGSVGS----------VGGVGEKGEPGE-------AGNPGPPGE 1268
Query: 99 C-LPTPCPPLGHGLRPRPPPGTPPPRCPRTLA-------PGPRGLFPAPPPAPARTGPAG 150
+ P G PP PP PGP G FP P P GPAG
Sbjct: 1269 AGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVG-FPGDPGPPGEPGPAG 1327
Query: 151 KAA--------ADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLLLLHGAMR 202
+ D G+PGP G P PP G+ GP GA
Sbjct: 1328 QDGVGGDKGEDGDPGQPGP-PGPSGEAGPPGPP--------GKRGP---------PGAAG 1369
Query: 203 LGGGSREKLACGRAGRAARTGR----GEGGRRAEEEAAGRRRRRRPGRTRGIPRAAG 255
G EK A G AG G+ G G + G R P +G+P AAG
Sbjct: 1370 AEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAG 1426
Score = 42.4 bits (98), Expect = 4e-04
Identities = 70/284 (24%), Positives = 93/284 (32%), Gaps = 51/284 (17%)
Query: 11 GPRVGVRKREEEEEKSSLGRAAGVESRRRAGEGAAGRRDGGWGPPGGAGDHQTLQRASLL 70
GP E+ +K +G S+ GE G GP G G +
Sbjct: 1114 GPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPG----------I 1163
Query: 71 PGGSADKDQEREPSL-------AARGTAPPAPPRQCLPTPCPPLGHG----LRPRPPPGT 119
GG + + + ARG P P P PP G + P PPG
Sbjct: 1164 AGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGP 1223
Query: 120 PPPRCPR--TLAPGPRGLFPAPPPAPARTGPAGKAA--ADRGRPGPAA--------GRRV 167
P PR P+ A GP+G PP + G G+ + G PGP G R
Sbjct: 1224 PGPRGPQGPNGADGPQG----PPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERG 1279
Query: 168 RRSPSFPPFLL----AQTRLGRTGPLALCLLLLLHGAMRLGGGSREKLACGRAGRAARTG 223
+ + PP A+ G GP G + G G AG+ G
Sbjct: 1280 EKGEAGPPGAAGPPGAKGPPGDDGPKG------NPGPVGFPGDPGPPGEPGPAGQDGVGG 1333
Query: 224 ----RGEGGRRAEEEAAGRRRRRRPGRTRGIPRAAGGLSRAGTR 263
G+ G+ +G P RG P AAG R G +
Sbjct: 1334 DKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEK 1377
Score = 38.1 bits (87), Expect = 0.008
Identities = 72/281 (25%), Positives = 91/281 (32%), Gaps = 57/281 (20%)
Query: 9 KEGPRVGVRKREEEEEKSSLGRAAGVESRRRAGEGAAGRRDGGWGPPGGAGDH--QTLQR 66
++G R K ++ G +R G+ GG GPPG G+ Q Q
Sbjct: 866 EKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQG 925
Query: 67 ASLLPG-----GSADKD-------QEREPSLAARGTAPPAPPRQCLPTPCPPLGH----G 110
PG G KD Q E + T PP P + P P G G
Sbjct: 926 PVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGK-TGPPGPGG--VVGPQGPTGETGPIG 982
Query: 111 LRPRPPPGTPPPRCPRTLAPGPRGL--FPAPPPAPARTGPAGKAA--ADRGRPGP--AAG 164
R P P PP A G G P P + GPAG +RG PG A G
Sbjct: 983 ERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPG 1042
Query: 165 RRVRRSPSFPPFLLAQTRLGRTGPLALCLLLLLHGAMRLGGGSREKLACGRAGRAARTGR 224
+ P PP GP+ G E+ + G AG GR
Sbjct: 1043 LKGGEGPQGPP-----------GPV---------------GSPGERGSAGTAGPIGLPGR 1076
Query: 225 ----GEGGRRAEEEAAGRRRRRRPGRTRGIPRAAGGLSRAG 261
G G E+ A G + + P G+ G AG
Sbjct: 1077 PGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAG 1117
Score = 37.7 bits (86), Expect = 0.011
Identities = 65/238 (27%), Positives = 79/238 (33%), Gaps = 55/238 (23%)
Query: 43 GAAGRRDGGWGPPGGAGDHQTLQRASL--LPGGSADKDQEREPSLAARGTAPPAPP---- 96
GAAG+ +G G PG G A L PG + P L G P PP
Sbjct: 1000 GAAGK-EGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKG-GEGPQGPPGPVG 1057
Query: 97 ----RQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGL--------FPAPPPAPA 144
R T P GL RP P PP APG +G P P
Sbjct: 1058 SPGERGSAGTAGPI---GLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPG 1114
Query: 145 RTGPAGKAAADR-----GRPGP--AAGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLLLL 197
GPAG D G PG + G + P PP G GP+
Sbjct: 1115 PAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPP--------GLQGPV-------- 1158
Query: 198 HGAMRLGGGSREKLACGRAGRAARTGRGEGGRRAEEEAAGRRRRRRPGRTRGIPRAAG 255
GA + GG E R +G G++ +E A G P +G+P G
Sbjct: 1159 -GAPGIAGGDGEP--------GPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPG 1207
Score = 37.7 bits (86), Expect = 0.011
Identities = 42/132 (31%), Positives = 49/132 (37%), Gaps = 35/132 (26%)
Query: 43 GAAGRRD--GGWGPPG-----------GAGDHQTLQRASLLPGGSADKDQEREPSLAARG 89
GAAG+ G GPPG G H L PG +K P
Sbjct: 1423 GAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQG-- 1480
Query: 90 TAPPAPPRQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGLFPAPPPAPARTGPA 149
+P A +P P PLG P PPG P P+ GP+G TGPA
Sbjct: 1481 -SPGAKGDGGIPGPAGPLG----PPGPPGLPGPQ-------GPKG-------NKGSTGPA 1521
Query: 150 GKAAADRGRPGP 161
G+ D G PGP
Sbjct: 1522 GQ-KGDSGLPGP 1532
Score = 32.7 bits (73), Expect = 0.35
Identities = 39/135 (28%), Positives = 47/135 (34%), Gaps = 22/135 (16%)
Query: 53 GPPGGAGDHQT-----LQRASLLPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPL 107
GPPG AG LQ + PG D+ P L P PP L P
Sbjct: 442 GPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPG-ADGLPGPPGTMLMLPFRYG 500
Query: 108 GHGLRPRPPPGTPPPRCPRTLA---------PGPRGLF--PAPPPAPARTGPAGKAAADR 156
G G + P + L PGP GL P P P +G G++
Sbjct: 501 GDGSKG-PTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGES---- 555
Query: 157 GRPGPAAGRRVRRSP 171
G PGP R V+ P
Sbjct: 556 GDPGPQGPRGVQGPP 570
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.139 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,794,534
Number of Sequences: 37866
Number of extensions: 1366441
Number of successful extensions: 24991
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 2030
Number of HSP's that attempted gapping in prelim test: 10894
Number of HSP's gapped (non-prelim): 9327
length of query: 274
length of database: 18,247,518
effective HSP length: 101
effective length of query: 173
effective length of database: 14,423,052
effective search space: 2495187996
effective search space used: 2495187996
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.