Guide to the Human Genome
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Name: CITED4 Sequence: fasta or formatted (184aa) NCBI GI: 19263349
Description:

Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4

Referenced in:

CREB / ATF Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.8         31           4
 C cysteine            1.1          2           1
 D aspartate           3.3          6           1
 E glutamate           4.9          9           2
 F phenylalanine       3.3          6           1
 G glycine            11.4         21           2
 H histidine           3.3          6           1
 I isoleucine          1.1          2           1
 K lysine              0.0          0           0
 L leucine            11.4         21           1
 M methionine          1.6          3           1
 N asparagine          0.5          1           1
 P proline            20.7         38           4
 Q glutamine           3.3          6           1
 R arginine            4.9          9           1
 S serine              6.0         11           2
 T threonine           1.6          3           1
 V valine              2.7          5           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Cbp/p300-interacting transactivator, with Glu/Asp-ri... 
CITED1                0.135   melanocyte-specific gene 1 isoform 1 
CITED1                0.135   melanocyte-specific gene 1 isoform 1 
CITED1                0.135   melanocyte-specific gene 1 isoform 2 
CITED1                0.135   melanocyte-specific gene 1 isoform 1 
CITED2                0.102   Cbp/p300-interacting transactivator, with Glu/Asp-ri...
CCNK                  0.102   cyclin K isoform 1 
DIAPH1                0.097   diaphanous 1 isoform 2 
DIAPH1                0.097   diaphanous 1 isoform 1 
TAF4                  0.097   TBP-associated factor 4 
WASF2                 0.094   WAS protein family, member 2 
FMN1                  0.088   formin 1 
WBP11                 0.086   WW domain binding protein 11 
WASL                  0.083   Wiskott-Aldrich syndrome gene-like protein 
FMNL1                 0.083   formin-like 1 
INF2                  0.083   inverted formin 2 isoform 2 
INF2                  0.083   inverted formin 2 isoform 1 
YLPM1                 0.083   YLP motif containing 1 
SAMD1                 0.083   sterile alpha motif domain containing 1 
FLJ22184              0.080   PREDICTED: hypothetical protein FLJ22184 
FMN2                  0.080   formin 2 
CPSF6                 0.080   cleavage and polyadenylation specific factor 6, 68 ...
WAS                   0.077   Wiskott-Aldrich syndrome protein 
PDCD7                 0.077   programmed cell death 7 
NACA                  0.075   nascent polypeptide-associated complex alpha subuni...
SETD1B                0.075   SET domain containing 1B 
PRB2                  0.075   proline-rich protein BstNI subfamily 2 
FOXE3                 0.075   forkhead box E3 
PRB3                  0.075   proline-rich protein BstNI subfamily 3 precursor [H...
PRR12                 0.075   proline rich 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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