Guide to the Human Genome
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Name: RUSC1 Sequence: fasta or formatted (902aa) NCBI GI: 157412245
Description:

RUN and SH3 domain containing 1 isoform a

Referenced in:

Additional Interaction Domain Families
Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt prot [796aa] RUN and SH3 domain containing 1 isoform b
alt prot [492aa] RUN and SH3 domain containing 1 isoform c
alt prot [433aa] RUN and SH3 domain containing 1 isoform d
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         70           2
 C cysteine            1.9         17           2
 D aspartate           4.9         44           2
 E glutamate           6.5         59           3
 F phenylalanine       2.1         19           2
 G glycine             9.0         81           2
 H histidine           2.3         21           4
 I isoleucine          2.0         18           2
 K lysine              3.7         33           2
 L leucine            11.0         99           5
 M methionine          0.9          8           1
 N asparagine          2.4         22           3
 P proline            11.5        104           5
 Q glutamine           4.2         38           2
 R arginine            6.2         56           2
 S serine             11.1        100           3
 T threonine           5.0         45           2
 V valine              4.9         44           2
 W tryptophan          2.1         19           2
 Y tyrosine            0.6          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RUN and SH3 domain containing 1 isoform a 
RUSC1                 0.685   RUN and SH3 domain containing 1 isoform b 
RUSC1                 0.484   RUN and SH3 domain containing 1 isoform c 
RUSC1                 0.462   RUN and SH3 domain containing 1 isoform d 
RUSC2                 0.126   RUN and SH3 domain containing 2 
RUSC2                 0.126   RUN and SH3 domain containing 2 
RERE                  0.015   atrophin-1 like protein isoform b 
RERE                  0.015   atrophin-1 like protein isoform a 
RERE                  0.015   atrophin-1 like protein isoform a 
LOC100132713          0.015   PREDICTED: similar to hCG1654128 
LOC646509             0.014   PREDICTED: hypothetical protein 
ITSN1                 0.014   intersectin 1 isoform ITSN-s 
ITSN1                 0.014   intersectin 1 isoform ITSN-l 
LMOD2                 0.013   leiomodin 2 (cardiac) 
SETD1B                0.013   SET domain containing 1B 
CEL                   0.013   carboxyl ester lipase precursor 
LOC100291797          0.013   PREDICTED: hypothetical protein XP_002345651 
LOC100291443          0.013   PREDICTED: hypothetical protein XP_002346504 
LOC100289394          0.013   PREDICTED: hypothetical protein XP_002342316 
DNM1                  0.013   dynamin 1 isoform 1 
PCLO                  0.013   piccolo isoform 2 
PCLO                  0.013   piccolo isoform 1 
MYPOP                 0.012   Myb protein P42POP 
EFS                   0.012   embryonal Fyn-associated substrate isoform 1 
CPSF6                 0.012   cleavage and polyadenylation specific factor 6, 68 ...
TNRC18                0.012   trinucleotide repeat containing 18 
ARHGAP4               0.012   Rho GTPase activating protein 4 
SFPQ                  0.012   splicing factor proline/glutamine rich (polypyrimidin...
SMTN                  0.012   smoothelin isoform b 
SMTN                  0.012   smoothelin isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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