Guide to the Human Genome
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Name: APBB1IP Sequence: fasta or formatted (666aa) NCBI GI: 56118221
Description:

amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein

Referenced in:

Additional Brain Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         56           3
 C cysteine            1.2          8           2
 D aspartate           6.6         44           2
 E glutamate           7.1         47           4
 F phenylalanine       2.9         19           2
 G glycine             5.7         38           4
 H histidine           2.0         13           2
 I isoleucine          3.0         20           2
 K lysine              7.7         51           2
 L leucine             8.9         59           2
 M methionine          1.8         12           1
 N asparagine          4.2         28           1
 P proline            13.1         87           8
 Q glutamine           4.7         31           1
 R arginine            3.5         23           2
 S serine              6.3         42           2
 T threonine           4.5         30           2
 V valine              4.8         32           2
 W tryptophan          0.8          5           1
 Y tyrosine            3.2         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   amyloid beta (A4) precursor protein-binding, family ... 
RAPH1                 0.338   Ras association and pleckstrin homology domains 1 is...
RAPH1                 0.290   Ras association and pleckstrin homology domains 1 is...
GRB14                 0.109   growth factor receptor-bound protein 14 
GRB10                 0.100   growth factor receptor-bound protein 10 isoform a [H...
GRB10                 0.099   growth factor receptor-bound protein 10 isoform c [H...
GRB10                 0.099   growth factor receptor-bound protein 10 isoform c [H...
GRB7                  0.086   growth factor receptor-bound protein 7 
GRB7                  0.086   growth factor receptor-bound protein 7 
PRR12                 0.055   proline rich 12 
WASL                  0.052   Wiskott-Aldrich syndrome gene-like protein 
FMN2                  0.051   formin 2 
DIAPH1                0.048   diaphanous 1 isoform 2 
DIAPH1                0.048   diaphanous 1 isoform 1 
SETD1B                0.046   SET domain containing 1B 
CCNK                  0.044   cyclin K isoform 1 
WASF2                 0.043   WAS protein family, member 2 
WAS                   0.041   Wiskott-Aldrich syndrome protein 
FMN1                  0.040   formin 1 
SF3A2                 0.040   splicing factor 3a, subunit 2 
FMNL2                 0.040   formin-like 2 
WIPF3                 0.040   WAS/WASL interacting protein family, member 3 [Homo...
CPSF6                 0.038   cleavage and polyadenylation specific factor 6, 68 ...
WBP11                 0.038   WW domain binding protein 11 
ESX1                  0.037   extraembryonic, spermatogenesis, homeobox 1-like [Ho...
FMNL1                 0.037   formin-like 1 
GRB10                 0.037   growth factor receptor-bound protein 10 isoform b [H...
INF2                  0.037   inverted formin 2 isoform 2 
INF2                  0.037   inverted formin 2 isoform 1 
SFPQ                  0.036   splicing factor proline/glutamine rich (polypyrimidin...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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