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Search of human proteins with 239741026
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741026 PREDICTED: hypothetical protein XP_002342071 [Homo
sapiens]
(455 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741026 PREDICTED: hypothetical protein XP_002342071 [Homo ... 957 0.0
gi|239752681 PREDICTED: hypothetical protein [Homo sapiens] 394 e-110
gi|239747218 PREDICTED: hypothetical protein XP_002346942 [Homo ... 394 e-110
gi|60593038 keratin associated protein 5-4 [Homo sapiens] 43 7e-04
gi|54400749 keratin associated protein 5-1 [Homo sapiens] 42 9e-04
gi|60593040 keratin associated protein 5-10 [Homo sapiens] 42 0.001
gi|13994372 keratin associated protein 17-1 [Homo sapiens] 40 0.004
gi|60279697 keratin associated protein 5-7 [Homo sapiens] 40 0.004
gi|123173777 keratin associated protein 5-8 [Homo sapiens] 40 0.004
gi|123702038 keratin associated protein 5-9 [Homo sapiens] 40 0.004
gi|122891874 keratin associated protein 5-5 [Homo sapiens] 40 0.006
gi|60099478 keratin associated protein 5-6 [Homo sapiens] 39 0.007
gi|51972220 keratin associated protein 5-2 [Homo sapiens] 39 0.010
gi|60593036 keratin associated protein 5-3 [Homo sapiens] 36 0.063
gi|53292629 keratin associated protein 5-11 [Homo sapiens] 35 0.18
gi|62750349 histone deacetylase 5 isoform 3 [Homo sapiens] 34 0.31
gi|62750347 histone deacetylase 5 isoform 1 [Homo sapiens] 34 0.31
gi|13027594 zinc finger protein 747 [Homo sapiens] 34 0.31
gi|89353295 core-binding factor, runt domain, alpha subunit 2; t... 33 0.41
gi|74229008 core-binding factor, runt domain, alpha subunit 2; t... 33 0.41
gi|4826663 core-binding factor, runt domain, alpha subunit 2; tr... 33 0.41
gi|66346695 fibrillin 2 precursor [Homo sapiens] 33 0.53
gi|37059814 ETAA16 protein [Homo sapiens] 33 0.70
gi|24430141 fibrillin 1 precursor [Homo sapiens] 32 0.91
gi|154355000 KH-type splicing regulatory protein [Homo sapiens] 32 0.91
gi|134031945 SCO-spondin [Homo sapiens] 32 1.2
gi|11138123 cholinergic receptor, nicotinic, alpha 10 [Homo sapi... 32 1.6
gi|62988324 tenascin N [Homo sapiens] 31 2.0
gi|239741968 PREDICTED: hypothetical protein [Homo sapiens] 31 2.7
gi|145701025 multiple EGF-like-domains 8 [Homo sapiens] 31 2.7
>gi|239741026 PREDICTED: hypothetical protein XP_002342071 [Homo
sapiens]
Length = 455
Score = 957 bits (2475), Expect = 0.0
Identities = 455/455 (100%), Positives = 455/455 (100%)
Query: 1 MASYQGQWSGTNGIRVADAQSGDWREILECRGHDSWDALLEENFNLDLGVATPQTVKGCL 60
MASYQGQWSGTNGIRVADAQSGDWREILECRGHDSWDALLEENFNLDLGVATPQTVKGCL
Sbjct: 1 MASYQGQWSGTNGIRVADAQSGDWREILECRGHDSWDALLEENFNLDLGVATPQTVKGCL 60
Query: 61 QRPGLSSGQPQAAEFPADVTPCGLRTLWKIMAHGFLQQGPWPHTGTTQPQHQVGSVVLLS 120
QRPGLSSGQPQAAEFPADVTPCGLRTLWKIMAHGFLQQGPWPHTGTTQPQHQVGSVVLLS
Sbjct: 61 QRPGLSSGQPQAAEFPADVTPCGLRTLWKIMAHGFLQQGPWPHTGTTQPQHQVGSVVLLS 120
Query: 121 PAQIHPELLCWLRSGLPLREAEEQAGCCTWCAPDRQLGRTVMARGSLVLTGLPCQLLPEQ 180
PAQIHPELLCWLRSGLPLREAEEQAGCCTWCAPDRQLGRTVMARGSLVLTGLPCQLLPEQ
Sbjct: 121 PAQIHPELLCWLRSGLPLREAEEQAGCCTWCAPDRQLGRTVMARGSLVLTGLPCQLLPEQ 180
Query: 181 KREQLQGSLSRSPLFPSERLQKGVSAALEELQGSQLLTLVPSGGPQAKLSAHDRHDQGEE 240
KREQLQGSLSRSPLFPSERLQKGVSAALEELQGSQLLTLVPSGGPQAKLSAHDRHDQGEE
Sbjct: 181 KREQLQGSLSRSPLFPSERLQKGVSAALEELQGSQLLTLVPSGGPQAKLSAHDRHDQGEE 240
Query: 241 CLPEQSFMFCTRDVIRNVQGLTKGLSAGLSNPTLSGNGALSPPRAISGSPQNPTLSVCTR 300
CLPEQSFMFCTRDVIRNVQGLTKGLSAGLSNPTLSGNGALSPPRAISGSPQNPTLSVCTR
Sbjct: 241 CLPEQSFMFCTRDVIRNVQGLTKGLSAGLSNPTLSGNGALSPPRAISGSPQNPTLSVCTR 300
Query: 301 YITGAVVGAGEGAVDTRFMTGCAEAVTVPSPAEDSAVTGCAGAVTRCLPRWRTVRGPACG 360
YITGAVVGAGEGAVDTRFMTGCAEAVTVPSPAEDSAVTGCAGAVTRCLPRWRTVRGPACG
Sbjct: 301 YITGAVVGAGEGAVDTRFMTGCAEAVTVPSPAEDSAVTGCAGAVTRCLPRWRTVRGPACG 360
Query: 361 DRLCGSCDGAFPGGGQCGDRLCRSCDSPFPGGGWCGDRLCGSCDTVPSPAGDGAVTGCAG 420
DRLCGSCDGAFPGGGQCGDRLCRSCDSPFPGGGWCGDRLCGSCDTVPSPAGDGAVTGCAG
Sbjct: 361 DRLCGSCDGAFPGGGQCGDRLCRSCDSPFPGGGWCGDRLCGSCDTVPSPAGDGAVTGCAG 420
Query: 421 AVTVPSPVGDSAPRLRWQPAPQKHSQMSPELRRED 455
AVTVPSPVGDSAPRLRWQPAPQKHSQMSPELRRED
Sbjct: 421 AVTVPSPVGDSAPRLRWQPAPQKHSQMSPELRRED 455
>gi|239752681 PREDICTED: hypothetical protein [Homo sapiens]
Length = 286
Score = 394 bits (1012), Expect = e-110
Identities = 184/193 (95%), Positives = 186/193 (96%)
Query: 263 KGLSAGLSNPTLSGNGALSPPRAISGSPQNPTLSVCTRYITGAVVGAGEGAVDTRFMTGC 322
+ +S NPTLSGNGALSPPRAISGSPQNPTLSVCTRYITGAVVGAGEGAVDT FMTGC
Sbjct: 94 RAISGSPQNPTLSGNGALSPPRAISGSPQNPTLSVCTRYITGAVVGAGEGAVDTCFMTGC 153
Query: 323 AEAVTVPSPAEDSAVTGCAGAVTRCLPRWRTVRGPACGDRLCGSCDGAFPGGGQCGDRLC 382
AEAVTVPSPAEDSAVTGCAGAVTRCLPR RTVRGPACGDRLCGSCDGAFPGGGQCGDRLC
Sbjct: 154 AEAVTVPSPAEDSAVTGCAGAVTRCLPRRRTVRGPACGDRLCGSCDGAFPGGGQCGDRLC 213
Query: 383 RSCDSPFPGGGWCGDRLCGSCDTVPSPAGDGAVTGCAGAVTVPSPVGDSAPRLRWQPAPQ 442
RSCDSPFPGGGWCGDRLCGSCDTVPSPAGDGAVTGCAGAVTVPSPVGDSAPRLRWQPAPQ
Sbjct: 214 RSCDSPFPGGGWCGDRLCGSCDTVPSPAGDGAVTGCAGAVTVPSPVGDSAPRLRWQPAPQ 273
Query: 443 KHSQMSPELRRED 455
KHSQMSPELRRED
Sbjct: 274 KHSQMSPELRRED 286
>gi|239747218 PREDICTED: hypothetical protein XP_002346942 [Homo
sapiens]
Length = 244
Score = 394 bits (1012), Expect = e-110
Identities = 184/193 (95%), Positives = 186/193 (96%)
Query: 263 KGLSAGLSNPTLSGNGALSPPRAISGSPQNPTLSVCTRYITGAVVGAGEGAVDTRFMTGC 322
+ +S NPTLSGNGALSPPRAISGSPQNPTLSVCTRYITGAVVGAGEGAVDT FMTGC
Sbjct: 52 RAISGSPQNPTLSGNGALSPPRAISGSPQNPTLSVCTRYITGAVVGAGEGAVDTCFMTGC 111
Query: 323 AEAVTVPSPAEDSAVTGCAGAVTRCLPRWRTVRGPACGDRLCGSCDGAFPGGGQCGDRLC 382
AEAVTVPSPAEDSAVTGCAGAVTRCLPR RTVRGPACGDRLCGSCDGAFPGGGQCGDRLC
Sbjct: 112 AEAVTVPSPAEDSAVTGCAGAVTRCLPRRRTVRGPACGDRLCGSCDGAFPGGGQCGDRLC 171
Query: 383 RSCDSPFPGGGWCGDRLCGSCDTVPSPAGDGAVTGCAGAVTVPSPVGDSAPRLRWQPAPQ 442
RSCDSPFPGGGWCGDRLCGSCDTVPSPAGDGAVTGCAGAVTVPSPVGDSAPRLRWQPAPQ
Sbjct: 172 RSCDSPFPGGGWCGDRLCGSCDTVPSPAGDGAVTGCAGAVTVPSPVGDSAPRLRWQPAPQ 231
Query: 443 KHSQMSPELRRED 455
KHSQMSPELRRED
Sbjct: 232 KHSQMSPELRRED 244
>gi|60593038 keratin associated protein 5-4 [Homo sapiens]
Length = 288
Score = 42.7 bits (99), Expect = 7e-04
Identities = 32/87 (36%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 338 TGCAGAVTRCLPRWRTVRGPACGDRLCGSCDGAFPGGGQCGDRL--CRSCDSPFPGGGWC 395
+ C + C P V PAC CGSC G+ G G CG C SC G G C
Sbjct: 47 SSCCVPICCCKPVCCCV--PACSCSSCGSCGGSKGGYGSCGGSKGGCVSCGGSKGGCGSC 104
Query: 396 GDRL--CGSCDTVPSPAGDGAVTGCAG 420
G CGSC S G G+ G G
Sbjct: 105 GGSKGGCGSCG--GSKGGCGSCGGSKG 129
Score = 37.4 bits (85), Expect = 0.028
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 364 CGSCDGAFPGGGQCGDRLCRSCDSPFPGGGWCGDRLCGSCDTVPSPAGDGAVTGC 418
CGSC G+ G G CG C SC P CG C S P + G + C
Sbjct: 181 CGSCGGSKGGCGSCGCSQC-SCCKPCCCSSGCGSSCCQSSCCKPCCSSSGCGSSC 234
Score = 37.0 bits (84), Expect = 0.037
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 364 CGSCDGAFPGGGQCGDRL--CRSCDSPFPGGGWCGDRLCGSCDTVPSPAGDGA 414
CGSC G+ G G CG C SC G G CG C C +G G+
Sbjct: 161 CGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGCSQCSCCKPCCCSSGCGS 213
Score = 35.4 bits (80), Expect = 0.11
Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 364 CGSCDGAFPGGGQCGDRL--CRSCDSPFPGGGWCGDRLCGSCDTVPSPAGDGAVTGCAG 420
CGSC G+ G G CG C SC G G CG G S G G+ G G
Sbjct: 111 CGSCGGSKGGCGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCVSCGGSKGGCGSCGGSKG 169
Score = 33.5 bits (75), Expect = 0.41
Identities = 24/61 (39%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 364 CGSCDGAFPGGGQCGDRL--CRSCDSPFPGGGWCGDRL--CGSCDTVPSPAGDGAVTGCA 419
C SC G+ G G CG C SC G G CG CGSC S G G+ G
Sbjct: 131 CVSCGGSKGGCGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCGSCG--GSKGGCGSCGGSK 188
Query: 420 G 420
G
Sbjct: 189 G 189
Score = 31.6 bits (70), Expect = 1.6
Identities = 24/63 (38%), Positives = 24/63 (38%), Gaps = 15/63 (23%)
Query: 339 GCAGAVTRCLPRWRTVRGPACGDRLCGS-CDGAFPGGGQCGDRLCRSCDSPFPGGGWCGD 397
GC G C G CG CGS C G G G CG C C S G G CG
Sbjct: 2 GCCGCSGGC--------GSGCGG--CGSGCGGCGSGCGGCGSG-CGGCGS---GCGGCGS 47
Query: 398 RLC 400
C
Sbjct: 48 SCC 50
>gi|54400749 keratin associated protein 5-1 [Homo sapiens]
Length = 278
Score = 42.4 bits (98), Expect = 9e-04
Identities = 33/95 (34%), Positives = 37/95 (38%), Gaps = 8/95 (8%)
Query: 338 TGCAGAVTRCLP---RWRTVRGPACGDRLCGSCDGAFPGGGQCGDRL--CRSCDSPFPGG 392
+ C V C P R T +CG CGS G+ G G CG C SC G
Sbjct: 40 SSCCVPVCCCKPVCCRVPTCSCSSCGKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGC 99
Query: 393 GWCGDRL--CGSCDTVPSPAGDGAVTGCAGAVTVP 425
G CG CGSC G G GC + VP
Sbjct: 100 GSCGGSKGGCGSCGGSKGGCGSGC-GGCGSSCCVP 133
Score = 37.4 bits (85), Expect = 0.028
Identities = 30/90 (33%), Positives = 31/90 (34%), Gaps = 8/90 (8%)
Query: 338 TGCAGAVTRCLPRWRTVRGPACGDRLCGSCDGAFPGGGQCGDRLCRSCDSPFPGGGWCGD 397
+ C V C P V PAC C SC G C C SC G G CG
Sbjct: 128 SSCCVPVCCCKPMCCCV--PACS---CSSCGKGGCGSCGCSKGACGSCGGSKGGCGSCGG 182
Query: 398 RL--CGSCDTVPSPAGDGAVTGCAGAVTVP 425
CGSC G G GC VP
Sbjct: 183 CKGGCGSCGGSKGGCGSGC-GGCGSGCGVP 211
>gi|60593040 keratin associated protein 5-10 [Homo sapiens]
Length = 202
Score = 42.0 bits (97), Expect = 0.001
Identities = 35/106 (33%), Positives = 40/106 (37%), Gaps = 16/106 (15%)
Query: 321 GCAEAVTVPSPAEDSAVTGCAGAVTRCLPRWRTVRGPACGDRL--CGSCDGAFPGGGQCG 378
GC + VP C V C+P +CG CGSC G+ G G CG
Sbjct: 37 GCGSSCCVP--------VCCCKPVCCCVPACSCSSCGSCGGSKGDCGSCGGSKGGCGSCG 88
Query: 379 DRL--CRSCDSPFPGGGWCGDRL--CGSCDTVPSPAGDGAVTGCAG 420
C SC G G CG CGSC S G G+ G G
Sbjct: 89 GSKGGCGSCGGSKGGCGSCGGSKGGCGSCG--GSKGGCGSCGGSKG 132
Score = 32.3 bits (72), Expect = 0.91
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 364 CGSCDGAFPGGGQCGDRLCRSCDSPFPGGGWCGDRLCGSC 403
CGSC G+ G G CG C C C CGSC
Sbjct: 124 CGSCGGSKGGCGSCGCSQCNCCKP------CCCSSGCGSC 157
Score = 29.3 bits (64), Expect = 7.7
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 364 CGSCDGAFPGGGQCGDRLCRSCDSPFPGGGWCGDRLCGSCDTVPSPAGDGA 414
CGSC G+ G C SC G G CG C C +G G+
Sbjct: 114 CGSCGGSKGG--------CGSCGGSKGGCGSCGCSQCNCCKPCCCSSGCGS 156
>gi|13994372 keratin associated protein 17-1 [Homo sapiens]
Length = 105
Score = 40.0 bits (92), Expect = 0.004
Identities = 31/88 (35%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 347 CLPRWRTVRGPACGDRLCGS--CDGAFPGGGQCGDRLCRSCDSPFPGGGWCGDRLCGSCD 404
C P G CG CG C G+ GG CG C S G G CG CGS
Sbjct: 24 CQPGCCGCCGSCCG---CGGSGCGGSGCGGSCCGSSCCGSGCGGCGGCGGCGGGCCGSSC 80
Query: 405 TVPSPAGDGAVTGCAGAVTV-PSPVGDS 431
S G +GC G V P+P+ D+
Sbjct: 81 CGSSCCG----SGCCGPVCCQPTPICDT 104
>gi|60279697 keratin associated protein 5-7 [Homo sapiens]
Length = 165
Score = 40.0 bits (92), Expect = 0.004
Identities = 29/84 (34%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 338 TGCAGAVTRCLPRWRTVRGPACGDRLCGSCDGAFPGGGQCGDRL--CRSCDSPFPGGGWC 395
+ C V C P V PAC CGSC G+ G G CG C SC G G C
Sbjct: 33 SSCCVPVCCCKPVCCCV--PACSCSSCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSC 90
Query: 396 GDRLCGSCDTV-PSPAGDGAVTGC 418
G C C P G + C
Sbjct: 91 G---CSQCSCYKPCCCSSGCGSSC 111
>gi|123173777 keratin associated protein 5-8 [Homo sapiens]
Length = 187
Score = 40.0 bits (92), Expect = 0.004
Identities = 28/84 (33%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 338 TGCAGAVTRCLPRWRTVRGPACGDRLCGSCDGAFPGGGQCGDRL--CRSCDSPFPGGGWC 395
+ C + C P V PAC CGSC G+ G G CG C SC G G C
Sbjct: 26 SSCCVPICCCKPVCCCV--PACSCSSCGSCGGSKGGRGSCGGSKGDCGSCGGSKGGCGSC 83
Query: 396 GDRLCGSCDTV-PSPAGDGAVTGC 418
G C C P G + C
Sbjct: 84 G---CSQCSCYKPCCCSSGCGSSC 104
>gi|123702038 keratin associated protein 5-9 [Homo sapiens]
Length = 169
Score = 40.0 bits (92), Expect = 0.004
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 340 CAGAVTRCLPRWRTVRGPACGDRLCGSCDGAFPGGGQCGDRLCRSCDSPFPGGGWCGDRL 399
C V C+P +CG R CGSC G+ G G CG C SC P CG
Sbjct: 41 CCKPVCCCVPACSC---SSCGKRGCGSCGGSKGGCGSCGCSQC-SCCKPCCCSSGCGSSC 96
Query: 400 C 400
C
Sbjct: 97 C 97
Score = 34.3 bits (77), Expect = 0.24
Identities = 27/91 (29%), Positives = 30/91 (32%), Gaps = 21/91 (23%)
Query: 339 GCAGAVTRCLPRWRTVRGPACG--DRLCGSCDGAFPGGGQCGDRLCRS--------CDSP 388
GC G C G +CG D CGSC G CG C C P
Sbjct: 2 GCCGCSGGC--------GSSCGGCDSSCGSCGSGCRG---CGPSCCAPVYCCKPVCCCVP 50
Query: 389 FPGGGWCGDRLCGSCDTVPSPAGDGAVTGCA 419
CG R CGSC G + C+
Sbjct: 51 ACSCSSCGKRGCGSCGGSKGGCGSCGCSQCS 81
>gi|122891874 keratin associated protein 5-5 [Homo sapiens]
Length = 237
Score = 39.7 bits (91), Expect = 0.006
Identities = 32/90 (35%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 338 TGCAGAVTRCLPRWRTVRG---PACGDRLCGSCDGAFPGGGQCG--DRLCRSCDSPFPGG 392
+GC V C P V +CG CGSC G+ G CG C SC G
Sbjct: 60 SGCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGGSKRGCVSCGVSKGACGSCGGSKGGC 119
Query: 393 GWCGDRL--CGSCDTVPSPAGDGAVTGCAG 420
G CG CGSC S G G+ G G
Sbjct: 120 GSCGGSKGGCGSCG--GSKGGCGSCGGSKG 147
Score = 33.9 bits (76), Expect = 0.31
Identities = 28/97 (28%), Positives = 31/97 (31%), Gaps = 20/97 (20%)
Query: 338 TGCAGAVTRCLPRWRTVRGPACGDRLCGSCDGAFPGGGQCGDRLC--------RSCDSPF 389
+GC G + C G CG CG C G G CG C C P
Sbjct: 26 SGCGGCGSGC-----GGCGSGCGG--CGGCGSGCAGCGGCGSGCCVPVCCCKPMCCCVPA 78
Query: 390 PGGGWCGDRLCGSC-----DTVPSPAGDGAVTGCAGA 421
CG CGSC V GA C G+
Sbjct: 79 CSCSSCGKGGCGSCGGSKRGCVSCGVSKGACGSCGGS 115
>gi|60099478 keratin associated protein 5-6 [Homo sapiens]
Length = 129
Score = 39.3 bits (90), Expect = 0.007
Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 338 TGCAGAVTRCLPRWRTVRGPACGDRLCGSCDGAFPGGGQCGDRL--CRSCDSPFPGGGWC 395
+ C + C P V PAC CGSC G+ G CG C SC G G C
Sbjct: 26 SSCCVPICCCKPVCCCV--PACSCTSCGSCGGSKGCCGSCGGSKGGCGSCGGSKGGCGSC 83
Query: 396 GDRLCGSCDTVPSPAGDGA 414
G C C +G G+
Sbjct: 84 GCSQCSCCKPCYCSSGCGS 102
Score = 35.0 bits (79), Expect = 0.14
Identities = 26/94 (27%), Positives = 31/94 (32%), Gaps = 21/94 (22%)
Query: 321 GCAEAVTVPSPAEDSAVTGCAGAVTRCLPRWRTVRGPACGDRL------------CGSCD 368
GC + VP C V C+P +CG CGSC
Sbjct: 23 GCGSSCCVP--------ICCCKPVCCCVPACSCTSCGSCGGSKGCCGSCGGSKGGCGSCG 74
Query: 369 GAFPGGGQCGDRLCRSCDSPFPGGGWCGDRLCGS 402
G+ G G CG C C + G CG C S
Sbjct: 75 GSKGGCGSCGCSQCSCCKPCYCSSG-CGSSCCQS 107
>gi|51972220 keratin associated protein 5-2 [Homo sapiens]
Length = 177
Score = 38.9 bits (89), Expect = 0.010
Identities = 30/96 (31%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Query: 321 GCAEAVTVPSPAEDSAVTGCAGAVTRCLPRWRTVRGPACGDRLCGSCDGAFPGGGQCGDR 380
GC S + + C V C P V PAC CGSC G+ G G CG
Sbjct: 37 GCGSGCGGCSSSCGGCGSRCYVPVCCCKPVCSWV--PACSCTSCGSCGGSKGGCGSCGGS 94
Query: 381 L--CRSCDSPFPGGGWCGDRLCGSCDTVPSPAGDGA 414
C SC G G CG C +G G+
Sbjct: 95 KGGCGSCGGSKGGCGSCGCSQSSCCKPCCCSSGCGS 130
>gi|60593036 keratin associated protein 5-3 [Homo sapiens]
Length = 238
Score = 36.2 bits (82), Expect = 0.063
Identities = 31/91 (34%), Positives = 34/91 (37%), Gaps = 12/91 (13%)
Query: 338 TGCAGAVTRCLPRWRTVRGPACGDRLCGSCDGAFPGGGQCGDRL--CRSCDSPFPGGG-- 393
+GC V C P V PAC CGSC G+ G CG C SC G G
Sbjct: 33 SGCCVPVCCCKPVCCCV--PACSCSSCGSCGGSKGVCGSCGGCKGGCGSCGGSKGGCGSS 90
Query: 394 ----WCGDRLCGSCDTVPSPAG--DGAVTGC 418
C CGSC G G+ GC
Sbjct: 91 CCVPVCCSSSCGSCGGSKGVCGFRGGSKGGC 121
Score = 34.7 bits (78), Expect = 0.18
Identities = 33/105 (31%), Positives = 38/105 (36%), Gaps = 30/105 (28%)
Query: 339 GCAGAVTRCLPRWRTVRGPACGDRLCGS-CDGAFPGGGQCGDRLC--------------- 382
GC+G C G +CG CGS C G G G CG C
Sbjct: 2 GCSGCSGGC--------GSSCGG--CGSSCGGCGSGYGGCGSGCCVPVCCCKPVCCCVPA 51
Query: 383 RSCDSPFPGGGWCGDRLCGSCDTVPSPAGD--GAVTGCAGAVTVP 425
SC S GG G +CGSC G G+ GC + VP
Sbjct: 52 CSCSSCGSCGGSKG--VCGSCGGCKGGCGSCGGSKGGCGSSCCVP 94
>gi|53292629 keratin associated protein 5-11 [Homo sapiens]
Length = 156
Score = 34.7 bits (78), Expect = 0.18
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 10/77 (12%)
Query: 338 TGCAGAVTRCLPRWRTVRGPACGDRLCGSCDGAFPGGGQCGDRLCRSCDSPFPGGGWCGD 397
+ C + C P V PAC CGSC G+ G C SC S G G CG
Sbjct: 33 SSCCVPICCCKPVCCCV--PACSCSSCGSCGGSKGG--------CGSCGSSKGGCGSCGC 82
Query: 398 RLCGSCDTVPSPAGDGA 414
C S +G G+
Sbjct: 83 SQSNCCKPCCSSSGCGS 99
>gi|62750349 histone deacetylase 5 isoform 3 [Homo sapiens]
Length = 1123
Score = 33.9 bits (76), Expect = 0.31
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 157 LGRTVMARGSLVLTGLPCQLLPEQKREQLQ--------GSLSRSPLFPSERLQKGVSAAL 208
L ++ A LV+ Q L +QK++QLQ G L R P E ++ ++
Sbjct: 502 LPQSPQALQQLVMQQQHQQFLEKQKQQQLQLGKILTKTGELPRQPTTHPEETEEELTEQQ 561
Query: 209 EELQGSQLLTLVPSGGPQAKLSAHDRHDQGEE 240
E L G LT+ G +++ + D ++ EE
Sbjct: 562 EVLLGEGALTMPREGSTESESTQEDLEEEDEE 593
>gi|62750347 histone deacetylase 5 isoform 1 [Homo sapiens]
Length = 1122
Score = 33.9 bits (76), Expect = 0.31
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 157 LGRTVMARGSLVLTGLPCQLLPEQKREQLQ--------GSLSRSPLFPSERLQKGVSAAL 208
L ++ A LV+ Q L +QK++QLQ G L R P E ++ ++
Sbjct: 501 LPQSPQALQQLVMQQQHQQFLEKQKQQQLQLGKILTKTGELPRQPTTHPEETEEELTEQQ 560
Query: 209 EELQGSQLLTLVPSGGPQAKLSAHDRHDQGEE 240
E L G LT+ G +++ + D ++ EE
Sbjct: 561 EVLLGEGALTMPREGSTESESTQEDLEEEDEE 592
>gi|13027594 zinc finger protein 747 [Homo sapiens]
Length = 191
Score = 33.9 bits (76), Expect = 0.31
Identities = 49/190 (25%), Positives = 68/190 (35%), Gaps = 27/190 (14%)
Query: 269 LSNPTLSGNGALSPPRAISGSPQNPTLSVCTRYITGAVVGAGEGAVDTRFMTGCAE---- 324
+++P+L ++PP A P++P + GAV A +R GC
Sbjct: 1 MTDPSLGLTVPMAPPLAPL-PPRDPNGAGSEWRKPGAVSFADVAVYFSREEWGCLRPAQR 59
Query: 325 AVTVPSPAEDSAVTGCAGAVTRCLPRWRTVRGPACGDRLCGSCDGAFPGGGQCGDRLCRS 384
A+ E G G CLP GP C S A P G CG
Sbjct: 60 ALYRDVMRETYGHLGALGESPTCLP------GP------CASTGPAAPLGAACG------ 101
Query: 385 CDSPFPGGGWCGDRLCGSCDTVPSPAGDGAVTGCAGAVTVPSPVGDSAPRLR-WQPAPQK 443
PG G G C +P + + G P+ G PR+R W+ QK
Sbjct: 102 --VGGPGAGQAASSQRGVCVLLPQESEAASRRSSPGWRRRPN-CGIRLPRIRRWRSVRQK 158
Query: 444 HSQMSPELRR 453
+Q PE R+
Sbjct: 159 RTQQIPETRK 168
>gi|89353295 core-binding factor, runt domain, alpha subunit 2;
translocated to, 2 isoform MTGR1a [Homo sapiens]
Length = 575
Score = 33.5 bits (75), Expect = 0.41
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 256 RNVQGLTKGLSAGLSNPTLSGNGALSPPRAISGSPQNPTLSVCTRYITGAVVGAGEGAVD 315
R V LS G+++ + NGA SPP+ S P + T S T A GA + +
Sbjct: 31 RPVSFTPTALSNGINHSPPTLNGAPSPPQRFSNGPASSTSSALTNQQLPATCGARQLSKL 90
Query: 316 TRFMT 320
RF+T
Sbjct: 91 KRFLT 95
>gi|74229008 core-binding factor, runt domain, alpha subunit 2;
translocated to, 2 isoform MTGR1c [Homo sapiens]
Length = 595
Score = 33.5 bits (75), Expect = 0.41
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 256 RNVQGLTKGLSAGLSNPTLSGNGALSPPRAISGSPQNPTLSVCTRYITGAVVGAGEGAVD 315
R V LS G+++ + NGA SPP+ S P + T S T A GA + +
Sbjct: 51 RPVSFTPTALSNGINHSPPTLNGAPSPPQRFSNGPASSTSSALTNQQLPATCGARQLSKL 110
Query: 316 TRFMT 320
RF+T
Sbjct: 111 KRFLT 115
>gi|4826663 core-binding factor, runt domain, alpha subunit 2;
translocated to, 2 isoform MTGR1b [Homo sapiens]
Length = 604
Score = 33.5 bits (75), Expect = 0.41
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 256 RNVQGLTKGLSAGLSNPTLSGNGALSPPRAISGSPQNPTLSVCTRYITGAVVGAGEGAVD 315
R V LS G+++ + NGA SPP+ S P + T S T A GA + +
Sbjct: 60 RPVSFTPTALSNGINHSPPTLNGAPSPPQRFSNGPASSTSSALTNQQLPATCGARQLSKL 119
Query: 316 TRFMT 320
RF+T
Sbjct: 120 KRFLT 124
>gi|66346695 fibrillin 2 precursor [Homo sapiens]
Length = 2912
Score = 33.1 bits (74), Expect = 0.53
Identities = 34/142 (23%), Positives = 48/142 (33%), Gaps = 24/142 (16%)
Query: 278 GALSPPRAISGSPQNPTLSVCTRYITGAVVGAGEGAVDTRFMT-GCAEAVTVPSPAEDSA 336
G PP PQ P + + A G+ G + + G A A V +
Sbjct: 28 GQPQPPPPKPPRPQPPP-----QQVRSATAGSEGGFLAPEYREEGAAVASRVRRRGQQDV 82
Query: 337 VTGCAGAVTR----CLPRWRTVRGP----------ACGDRLCGSCDGAFPGGGQ----CG 378
+ G +R C P W+T+ G +CGD C + GQ CG
Sbjct: 83 LRGPNVCGSRFHSYCCPGWKTLPGGNQCIVPICRNSCGDGFCSRPNMCTCSSGQISSTCG 142
Query: 379 DRLCRSCDSPFPGGGWCGDRLC 400
+ + C GG C D C
Sbjct: 143 SKSIQQCSVRCMNGGTCADDHC 164
>gi|37059814 ETAA16 protein [Homo sapiens]
Length = 926
Score = 32.7 bits (73), Expect = 0.70
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 175 QLLPEQKREQLQGSLSRSPLFPSERLQKGVSAALEELQGSQLLTLVPSGGPQAKLSAHDR 234
Q+L + + + GS+S + + +KGV+ LEE G Q L + K S+ +
Sbjct: 830 QILSQFNQNCITGSMSDTKITQGVEKKKGVNPLLEEAVGQQSLVKL---SESLKQSSKEE 886
Query: 235 HDQGEECLPEQ 245
++ +C PE+
Sbjct: 887 EEKNRKCSPEE 897
>gi|24430141 fibrillin 1 precursor [Homo sapiens]
Length = 2871
Score = 32.3 bits (72), Expect = 0.91
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 14/68 (20%)
Query: 347 CLPRWRTVRGP----------ACGDRLCGSCDGAFPGGGQ----CGDRLCRSCDSPFPGG 392
C P W+T+ G +CGD C + GQ CG R + C+ G
Sbjct: 67 CCPGWKTLPGGNQCIVPICRHSCGDGFCSRPNMCTCPSGQIAPSCGSRSIQHCNIRCMNG 126
Query: 393 GWCGDRLC 400
G C D C
Sbjct: 127 GSCSDDHC 134
>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
Length = 711
Score = 32.3 bits (72), Expect = 0.91
Identities = 26/74 (35%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 357 PACGDRLCGSCDGAFPGGGQCGDRLCRSCDSPFPGGGWCGDRLCGSCDTVPSPAGDGAVT 416
P GDR G G PGGG G S PGGG G R D V A
Sbjct: 35 PGAGDRGGGGPGGGGPGGGSAGG------PSQPPGGGGPGIRKDAFADAVQRARQIAAKI 88
Query: 417 GCAGAVTVPSPVGD 430
G A TV + D
Sbjct: 89 GGDAATTVNNSTPD 102
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 32.0 bits (71), Expect = 1.2
Identities = 43/154 (27%), Positives = 54/154 (35%), Gaps = 24/154 (15%)
Query: 262 TKGLSAGLSNPTLSGNGALSPPRAIS-GSPQNPTLSVCT-RYITGAVVGAGEGAVDTRFM 319
T+ L+ PTLSG G P + + SP P T +TG G G +
Sbjct: 3834 TRSRQCVLTMPTLSGQGCRGPRQDLECPSPDCPGAEGSTVEPVTGLPGGWGPWSS----W 3889
Query: 320 TGCAEAVTVPS-PAEDSAVTGCAGAVTRCLPRWR------------TVRGPACGDRLCGS 366
+ C+ + T P+ PA S C T P GP CG C
Sbjct: 3890 SPCSRSCTDPARPAWRSRTRLCLANCTMGDPLQERPCNLPSCTELPVCPGPGCGAGNCSW 3949
Query: 367 CDGA--FPGGGQCG---DRLCRSCDSPFPGGGWC 395
A P CG R R+ P PGG WC
Sbjct: 3950 TSWAPWEPCSRSCGVGQQRRLRAYRPPGPGGHWC 3983
>gi|11138123 cholinergic receptor, nicotinic, alpha 10 [Homo
sapiens]
Length = 450
Score = 31.6 bits (70), Expect = 1.6
Identities = 30/114 (26%), Positives = 40/114 (35%), Gaps = 17/114 (14%)
Query: 66 SSGQPQAAEFPADVTPCGLRTLWKIMAHGFLQQGPWPHTGTTQPQHQVGSVVLLSPAQIH 125
SS + A FP D CGL G W H G G+ L+ +
Sbjct: 152 SSCRVDVAAFPFDAQHCGLTF------------GSWTHGGHQLDVRPRGAAASLADFVEN 199
Query: 126 PELLCWLRSGLPLREAEEQAGCCTWCAPDRQLGRTVMARGSLVLTG--LPCQLL 177
E W G+P R GCC+ PD + R + + LPC L+
Sbjct: 200 VE---WRVLGMPARRRVLTYGCCSEPYPDVTFTLLLRRRAAAYVCNLLLPCVLI 250
>gi|62988324 tenascin N [Homo sapiens]
Length = 1299
Score = 31.2 bits (69), Expect = 2.0
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 356 GPACGDRLCGSCDGAFPGGGQCGDRLCRSCDSPFPGGGWCGDRLC 400
GPAC +RL +C GA G G+C D C C P+ G CG C
Sbjct: 163 GPAC-ERL--ACPGACSGHGRCVDGRC-LCHEPYVGAD-CGYPAC 202
>gi|239741968 PREDICTED: hypothetical protein [Homo sapiens]
Length = 263
Score = 30.8 bits (68), Expect = 2.7
Identities = 33/111 (29%), Positives = 39/111 (35%), Gaps = 12/111 (10%)
Query: 268 GLSNPTLSGNGALSPPRAISGSPQNPTLSVCTRYITGAVVGAGEGAVDTRFMTGCAEAVT 327
GL P ++ L SG+ + S + VGA A DTR EA
Sbjct: 149 GLGGPRVAAASELVRRGLASGAARARPASPAPARLLPLAVGASAAAGDTR----RTEARA 204
Query: 328 VPSPAEDSAVTGCAGAVTRCLPRWRTVRGPACGDRLCGSC---DGAFPGGG 375
PSP+ CA LP R P CG R G GA G G
Sbjct: 205 EPSPSRRRRRRCCAP-----LPGSLPARRPGCGGRRAGGARAGQGAHTGVG 250
>gi|145701025 multiple EGF-like-domains 8 [Homo sapiens]
Length = 2778
Score = 30.8 bits (68), Expect = 2.7
Identities = 25/74 (33%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 329 PSPAEDSAVTGCAGA-VTRCLPRWRTVRGPACGDRLCGSCDGAFPGGGQCGDRLCRSCDS 387
P P E G AGA + RC W GP C LC A G G C L +
Sbjct: 1349 PVPQECVPQDGAAGAGLCRCPQGWA---GPHCRMALCPENCNAHTGAGTCNQSLGVCICA 1405
Query: 388 PFPGGGWCGDRLCG 401
GG C +L G
Sbjct: 1406 EGFGGPDCATKLDG 1419
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,913,393
Number of Sequences: 37866
Number of extensions: 1248896
Number of successful extensions: 3809
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 3644
Number of HSP's gapped (non-prelim): 122
length of query: 455
length of database: 18,247,518
effective HSP length: 106
effective length of query: 349
effective length of database: 14,233,722
effective search space: 4967568978
effective search space used: 4967568978
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.