Guide to the Human Genome
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Name: LOC100132345 Sequence: fasta or formatted (263aa) NCBI GI: 239741968
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.6         41           3
 C cysteine            2.3          6           2
 D aspartate           2.7          7           1
 E glutamate           6.1         16           2
 F phenylalanine       0.4          1           1
 G glycine            11.8         31           2
 H histidine           2.3          6           1
 I isoleucine          2.3          6           1
 K lysine              1.1          3           1
 L leucine             7.2         19           2
 M methionine          1.1          3           1
 N asparagine          0.4          1           1
 P proline             9.1         24           2
 Q glutamine           2.3          6           1
 R arginine           17.9         47           6
 S serine              6.8         18           1
 T threonine           4.2         11           1
 V valine              4.2         11           1
 W tryptophan          1.9          5           2
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728767             0.055   PREDICTED: hypothetical protein 
LOC728767             0.055   PREDICTED: hypothetical protein 
LOC729370             0.043   PREDICTED: hypothetical protein 
LOC100289408          0.039   PREDICTED: hypothetical protein 
LOC100289408          0.039   PREDICTED: hypothetical protein XP_002344217 
LOC100292122          0.039   PREDICTED: hypothetical protein XP_002345138 
LOC100286986          0.039   PREDICTED: hypothetical protein XP_002344191 
LOC100290274          0.037   PREDICTED: hypothetical protein XP_002346984 
LOC100288645          0.037   PREDICTED: hypothetical protein XP_002342846 
FLJ31945              0.037   PREDICTED: hypothetical protein 
FLJ31945              0.037   PREDICTED: hypothetical protein 
MAGI2                 0.037   membrane associated guanylate kinase, WW and PDZ dom...
LOC100293812          0.035   PREDICTED: hypothetical protein 
LOC283999             0.033   hypothetical protein LOC283999 
NKX1-1                0.033   PREDICTED: NK1 homeobox 1 
LOC643355             0.031   PREDICTED: hypothetical protein 
LOC643355             0.031   PREDICTED: hypothetical protein 
COL1A1                0.029   alpha 1 type I collagen preproprotein 
LOC100130128          0.029   PREDICTED: hypothetical protein 
LOC100290946          0.029   PREDICTED: hypothetical protein XP_002347121 
LOC100130128          0.029   PREDICTED: hypothetical protein 
LOC100288583          0.029   PREDICTED: hypothetical protein XP_002343504 
LOC100288840          0.029   PREDICTED: hypothetical protein XP_002344246 
LOC100130128          0.029   PREDICTED: hypothetical protein 
LOC100132891          0.029   PREDICTED: hypothetical protein 
LOC100292035          0.029   PREDICTED: hypothetical protein XP_002345623 
LOC100289661          0.029   PREDICTED: hypothetical protein 
LOC100132891          0.029   PREDICTED: hypothetical protein 
LOC100289716          0.029   PREDICTED: hypothetical protein XP_002346898 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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