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Search of human proteins with 239740963
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239740963 PREDICTED: similar to N-ethylmaleimide-sensitive
factor [Homo sapiens]
(405 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239740963 PREDICTED: similar to N-ethylmaleimide-sensitive fa... 810 0.0
gi|113426932 PREDICTED: similar to N-ethylmaleimide-sensitive fa... 642 0.0
gi|156564401 vesicle-fusing ATPase [Homo sapiens] 494 e-140
gi|169164474 PREDICTED: hypothetical protein [Homo sapiens] 40 0.005
gi|239747958 PREDICTED: hypothetical protein isoform 4 [Homo sap... 40 0.005
gi|239741853 PREDICTED: hypothetical protein isoform 2 [Homo sap... 40 0.005
gi|239751535 PREDICTED: hypothetical protein [Homo sapiens] 39 0.006
gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo ... 39 0.006
gi|5454106 TBP-related factor 10 [Homo sapiens] 37 0.024
gi|222144283 hypothetical protein LOC65998 [Homo sapiens] 37 0.042
gi|110832843 TBP-associated factor 4 [Homo sapiens] 37 0.042
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 36 0.054
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 36 0.054
gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens] 35 0.093
gi|223972704 hypothetical protein LOC284418 [Homo sapiens] 35 0.12
gi|239749693 PREDICTED: similar to hCG1806822 [Homo sapiens] 35 0.12
gi|32171221 GRP1 (general receptor for phosphoinositides 1)-asso... 35 0.12
gi|23510368 homeobox D11 [Homo sapiens] 35 0.16
gi|239748099 PREDICTED: hypothetical protein [Homo sapiens] 35 0.16
gi|239741995 PREDICTED: hypothetical protein XP_002342368 [Homo ... 35 0.16
gi|239756916 PREDICTED: hypothetical protein [Homo sapiens] 34 0.21
gi|239751407 PREDICTED: hypothetical protein XP_002347839 [Homo ... 34 0.21
gi|239745917 PREDICTED: hypothetical protein XP_002343616 [Homo ... 34 0.21
gi|31542493 D site of albumin promoter (albumin D-box) binding p... 34 0.27
gi|239754651 PREDICTED: hypothetical protein XP_002346061 [Homo ... 34 0.27
gi|116256363 transmembrane protease, serine 13 [Homo sapiens] 34 0.27
gi|153945765 mitogen-activated protein kinase kinase kinase 1 [H... 33 0.46
gi|169160624 PREDICTED: hypothetical protein [Homo sapiens] 33 0.46
gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo ... 33 0.46
gi|14211869 late cornified envelope 3D [Homo sapiens] 33 0.46
>gi|239740963 PREDICTED: similar to N-ethylmaleimide-sensitive
factor [Homo sapiens]
Length = 405
Score = 810 bits (2093), Expect = 0.0
Identities = 405/405 (100%), Positives = 405/405 (100%)
Query: 1 MAPPLCPPRAPQAAAEPARAPCGARTPGTRPGTRASSRRLHACARAGGGGARAAGAGFAE 60
MAPPLCPPRAPQAAAEPARAPCGARTPGTRPGTRASSRRLHACARAGGGGARAAGAGFAE
Sbjct: 1 MAPPLCPPRAPQAAAEPARAPCGARTPGTRPGTRASSRRLHACARAGGGGARAAGAGFAE 60
Query: 61 RRAAAAEPDVSAKMAGRSMQAARCPTDELSLTNCAVVNEKDFQSGQHVIVRTSPNHRYTF 120
RRAAAAEPDVSAKMAGRSMQAARCPTDELSLTNCAVVNEKDFQSGQHVIVRTSPNHRYTF
Sbjct: 61 RRAAAAEPDVSAKMAGRSMQAARCPTDELSLTNCAVVNEKDFQSGQHVIVRTSPNHRYTF 120
Query: 121 TLKTHPSVVPGSIAFSLPQRKWAGLSIGQEIEVSLYTFDKAKQCIGTMTIEIDFLQKKSI 180
TLKTHPSVVPGSIAFSLPQRKWAGLSIGQEIEVSLYTFDKAKQCIGTMTIEIDFLQKKSI
Sbjct: 121 TLKTHPSVVPGSIAFSLPQRKWAGLSIGQEIEVSLYTFDKAKQCIGTMTIEIDFLQKKSI 180
Query: 181 DSNPYDTDKMAAEFIQQFNNQAFSVGQQLVFSFNEKLFGLLVKDIEAMDPSILKGEPATG 240
DSNPYDTDKMAAEFIQQFNNQAFSVGQQLVFSFNEKLFGLLVKDIEAMDPSILKGEPATG
Sbjct: 181 DSNPYDTDKMAAEFIQQFNNQAFSVGQQLVFSFNEKLFGLLVKDIEAMDPSILKGEPATG 240
Query: 241 KRQKIEVGLVVGNSQVAFEKAENSSLNLIGKAKTKENRQSIINPDWNFEKMGIGGLDKEF 300
KRQKIEVGLVVGNSQVAFEKAENSSLNLIGKAKTKENRQSIINPDWNFEKMGIGGLDKEF
Sbjct: 241 KRQKIEVGLVVGNSQVAFEKAENSSLNLIGKAKTKENRQSIINPDWNFEKMGIGGLDKEF 300
Query: 301 SDIFRRAFASRVFPPEIVEQMAIEDNSYSDTSLLFVHYLDPALEATRNVSMRWVDNAVTV 360
SDIFRRAFASRVFPPEIVEQMAIEDNSYSDTSLLFVHYLDPALEATRNVSMRWVDNAVTV
Sbjct: 301 SDIFRRAFASRVFPPEIVEQMAIEDNSYSDTSLLFVHYLDPALEATRNVSMRWVDNAVTV 360
Query: 361 EFSPCLKQLSSPKPKWGSPSLEGYESNERRKLNLYLALSKYQIDI 405
EFSPCLKQLSSPKPKWGSPSLEGYESNERRKLNLYLALSKYQIDI
Sbjct: 361 EFSPCLKQLSSPKPKWGSPSLEGYESNERRKLNLYLALSKYQIDI 405
>gi|113426932 PREDICTED: similar to N-ethylmaleimide-sensitive
factor [Homo sapiens]
Length = 563
Score = 642 bits (1655), Expect = 0.0
Identities = 321/321 (100%), Positives = 321/321 (100%)
Query: 1 MAPPLCPPRAPQAAAEPARAPCGARTPGTRPGTRASSRRLHACARAGGGGARAAGAGFAE 60
MAPPLCPPRAPQAAAEPARAPCGARTPGTRPGTRASSRRLHACARAGGGGARAAGAGFAE
Sbjct: 1 MAPPLCPPRAPQAAAEPARAPCGARTPGTRPGTRASSRRLHACARAGGGGARAAGAGFAE 60
Query: 61 RRAAAAEPDVSAKMAGRSMQAARCPTDELSLTNCAVVNEKDFQSGQHVIVRTSPNHRYTF 120
RRAAAAEPDVSAKMAGRSMQAARCPTDELSLTNCAVVNEKDFQSGQHVIVRTSPNHRYTF
Sbjct: 61 RRAAAAEPDVSAKMAGRSMQAARCPTDELSLTNCAVVNEKDFQSGQHVIVRTSPNHRYTF 120
Query: 121 TLKTHPSVVPGSIAFSLPQRKWAGLSIGQEIEVSLYTFDKAKQCIGTMTIEIDFLQKKSI 180
TLKTHPSVVPGSIAFSLPQRKWAGLSIGQEIEVSLYTFDKAKQCIGTMTIEIDFLQKKSI
Sbjct: 121 TLKTHPSVVPGSIAFSLPQRKWAGLSIGQEIEVSLYTFDKAKQCIGTMTIEIDFLQKKSI 180
Query: 181 DSNPYDTDKMAAEFIQQFNNQAFSVGQQLVFSFNEKLFGLLVKDIEAMDPSILKGEPATG 240
DSNPYDTDKMAAEFIQQFNNQAFSVGQQLVFSFNEKLFGLLVKDIEAMDPSILKGEPATG
Sbjct: 181 DSNPYDTDKMAAEFIQQFNNQAFSVGQQLVFSFNEKLFGLLVKDIEAMDPSILKGEPATG 240
Query: 241 KRQKIEVGLVVGNSQVAFEKAENSSLNLIGKAKTKENRQSIINPDWNFEKMGIGGLDKEF 300
KRQKIEVGLVVGNSQVAFEKAENSSLNLIGKAKTKENRQSIINPDWNFEKMGIGGLDKEF
Sbjct: 241 KRQKIEVGLVVGNSQVAFEKAENSSLNLIGKAKTKENRQSIINPDWNFEKMGIGGLDKEF 300
Query: 301 SDIFRRAFASRVFPPEIVEQM 321
SDIFRRAFASRVFPPEIVEQM
Sbjct: 301 SDIFRRAFASRVFPPEIVEQM 321
>gi|156564401 vesicle-fusing ATPase [Homo sapiens]
Length = 744
Score = 494 bits (1272), Expect = e-140
Identities = 248/248 (100%), Positives = 248/248 (100%)
Query: 74 MAGRSMQAARCPTDELSLTNCAVVNEKDFQSGQHVIVRTSPNHRYTFTLKTHPSVVPGSI 133
MAGRSMQAARCPTDELSLTNCAVVNEKDFQSGQHVIVRTSPNHRYTFTLKTHPSVVPGSI
Sbjct: 1 MAGRSMQAARCPTDELSLTNCAVVNEKDFQSGQHVIVRTSPNHRYTFTLKTHPSVVPGSI 60
Query: 134 AFSLPQRKWAGLSIGQEIEVSLYTFDKAKQCIGTMTIEIDFLQKKSIDSNPYDTDKMAAE 193
AFSLPQRKWAGLSIGQEIEVSLYTFDKAKQCIGTMTIEIDFLQKKSIDSNPYDTDKMAAE
Sbjct: 61 AFSLPQRKWAGLSIGQEIEVSLYTFDKAKQCIGTMTIEIDFLQKKSIDSNPYDTDKMAAE 120
Query: 194 FIQQFNNQAFSVGQQLVFSFNEKLFGLLVKDIEAMDPSILKGEPATGKRQKIEVGLVVGN 253
FIQQFNNQAFSVGQQLVFSFNEKLFGLLVKDIEAMDPSILKGEPATGKRQKIEVGLVVGN
Sbjct: 121 FIQQFNNQAFSVGQQLVFSFNEKLFGLLVKDIEAMDPSILKGEPATGKRQKIEVGLVVGN 180
Query: 254 SQVAFEKAENSSLNLIGKAKTKENRQSIINPDWNFEKMGIGGLDKEFSDIFRRAFASRVF 313
SQVAFEKAENSSLNLIGKAKTKENRQSIINPDWNFEKMGIGGLDKEFSDIFRRAFASRVF
Sbjct: 181 SQVAFEKAENSSLNLIGKAKTKENRQSIINPDWNFEKMGIGGLDKEFSDIFRRAFASRVF 240
Query: 314 PPEIVEQM 321
PPEIVEQM
Sbjct: 241 PPEIVEQM 248
>gi|169164474 PREDICTED: hypothetical protein [Homo sapiens]
Length = 259
Score = 39.7 bits (91), Expect = 0.005
Identities = 33/96 (34%), Positives = 38/96 (39%), Gaps = 18/96 (18%)
Query: 9 RAPQAAAEPARAPCG-ARTPGTRPGTRASSRRLHACARAGGGGARAAGAG-------FAE 60
R + AEPAR+ CG RPG A RR R GGG ARA G
Sbjct: 55 RVREGEAEPARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRGGDLGWAVALPH 114
Query: 61 RRAAAAEPDVS----------AKMAGRSMQAARCPT 86
R +A A P S + GR AA CP+
Sbjct: 115 RPSALAGPLPSQTAERQARPLVRELGRGSAAAGCPS 150
>gi|239747958 PREDICTED: hypothetical protein isoform 4 [Homo
sapiens]
Length = 259
Score = 39.7 bits (91), Expect = 0.005
Identities = 33/96 (34%), Positives = 38/96 (39%), Gaps = 18/96 (18%)
Query: 9 RAPQAAAEPARAPCG-ARTPGTRPGTRASSRRLHACARAGGGGARAAGAG-------FAE 60
R + AEPAR+ CG RPG A RR R GGG ARA G
Sbjct: 55 RVREGEAEPARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRGGDLGWAVALPH 114
Query: 61 RRAAAAEPDVS----------AKMAGRSMQAARCPT 86
R +A A P S + GR AA CP+
Sbjct: 115 RPSALAGPLPSQTAERQARPLVRELGRGSAAAGCPS 150
>gi|239741853 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 259
Score = 39.7 bits (91), Expect = 0.005
Identities = 33/96 (34%), Positives = 38/96 (39%), Gaps = 18/96 (18%)
Query: 9 RAPQAAAEPARAPCG-ARTPGTRPGTRASSRRLHACARAGGGGARAAGAG-------FAE 60
R + AEPAR+ CG RPG A RR R GGG ARA G
Sbjct: 55 RVREGEAEPARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRGGDLGWAVALPH 114
Query: 61 RRAAAAEPDVS----------AKMAGRSMQAARCPT 86
R +A A P S + GR AA CP+
Sbjct: 115 RPSALAGPLPSQTAERQARPLVRELGRGSAAAGCPS 150
>gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 39.3 bits (90), Expect = 0.006
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 2 APPLCPPRAPQAAAEP-ARAPCGARTPGTRPGTRASSRRLHACARAGGGGARAAGAGFAE 60
AP LCP RA + P R P G +P R G A++ AR GG R+ A A
Sbjct: 143 APRLCPQRASPGCSSPGVRGPGGGASPRARGGNAAAA----LAARQAAGGGRSRSAFVAG 198
Query: 61 RRAAAA 66
R AA A
Sbjct: 199 RDAALA 204
>gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo
sapiens]
Length = 255
Score = 39.3 bits (90), Expect = 0.006
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 2 APPLCPPRAPQAAAEP-ARAPCGARTPGTRPGTRASSRRLHACARAGGGGARAAGAGFAE 60
AP LCP RA + P R P G +P R G A++ AR GG R+ A A
Sbjct: 143 APRLCPQRASPGCSSPGVRGPGGGASPRARGGNAAAA----LAARQAAGGGRSRSAFVAG 198
Query: 61 RRAAAA 66
R AA A
Sbjct: 199 RDAALA 204
>gi|5454106 TBP-related factor 10 [Homo sapiens]
Length = 218
Score = 37.4 bits (85), Expect = 0.024
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 4/128 (3%)
Query: 7 PPRAPQAAAE-PARAPCGARTPGTRPGTRASSRRLHACARAGGGGARAAGAGFAERRAAA 65
P AP +AA P AP P P + A+ + AGG GA AA G A A
Sbjct: 10 PEAAPASAASAPGPAP-PVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARA 68
Query: 66 AEPDVSAKMAGRSMQAARCPTDELSLTNCAVVNEKDFQSGQHVIVRTSPNHRYTFTLKTH 125
EP + + + A E +++N V +V ++P + L+ +
Sbjct: 69 GEP--AERRGAAPVSAGGAAPPEGAISNGVYVLPSAANGDVKPVVSSTPLVDFLMQLEDY 126
Query: 126 PSVVPGSI 133
+P ++
Sbjct: 127 TPTIPDAV 134
>gi|222144283 hypothetical protein LOC65998 [Homo sapiens]
Length = 678
Score = 36.6 bits (83), Expect = 0.042
Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 4 PLCPPRAPQAAAEPARAPCGARTPGTRPGTRASSRRLHACARAGGGGARAAGAGFAERR 62
P CPP+ P A PA C + G RA RL A RAGG +R GA ERR
Sbjct: 205 PACPPKGPGKA--PAGGGCRRQRRGGPVAPRARRLRLSASRRAGG--SRGLGARRLERR 259
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 36.6 bits (83), Expect = 0.042
Identities = 32/87 (36%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 2 APPLCPPRAPQAAAEPARAPCGART--PGTRPGTRA----SSRRLHACARAGGGGARAAG 55
A P PP AP A P P G T P P A S+ A A A GG A +G
Sbjct: 268 AAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSG 327
Query: 56 AGFAERRAAAAEPDVSAKMAGRSMQAA 82
AAA P V A+ R +QAA
Sbjct: 328 QPGPGAAAAAPAPGVKAESPKRVVQAA 354
Score = 32.7 bits (73), Expect = 0.60
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 2 APPLCPPRAPQAAAEPARAPCG---ARTPGTRPGTRASSRRLHACARAGGGGARAAGAGF 58
+PP P A AAA P P AR PG G ++ + A A GG +AGA
Sbjct: 256 SPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGG--SAGAAP 313
Query: 59 AERRAAAAEPDVSAKMAGRSMQAARCP 85
A AA VS + + AA P
Sbjct: 314 APAPAAGGPAGVSGQPGPGAAAAAPAP 340
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 36.2 bits (82), Expect = 0.054
Identities = 29/75 (38%), Positives = 31/75 (41%), Gaps = 12/75 (16%)
Query: 3 PPLCPPRAPQAAAEPARAPCGARTPGTRPGTRAS---------SRRLHACARAGGGGARA 53
PP PPR P AA P AP G R G PG R S S +H G GAR
Sbjct: 101 PPPAPPRPPPAAPSPPAAP-GPRGGGASPGARRSDFLQKTGSNSFTVHPRGLHRGAGARL 159
Query: 54 AGAGFA--ERRAAAA 66
G + E RA A
Sbjct: 160 LSNGHSAPEPRAGPA 174
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 36.2 bits (82), Expect = 0.054
Identities = 29/75 (38%), Positives = 31/75 (41%), Gaps = 12/75 (16%)
Query: 3 PPLCPPRAPQAAAEPARAPCGARTPGTRPGTRAS---------SRRLHACARAGGGGARA 53
PP PPR P AA P AP G R G PG R S S +H G GAR
Sbjct: 101 PPPAPPRPPPAAPSPPAAP-GPRGGGASPGARRSDFLQKTGSNSFTVHPRGLHRGAGARL 159
Query: 54 AGAGFA--ERRAAAA 66
G + E RA A
Sbjct: 160 LSNGHSAPEPRAGPA 174
>gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]
Length = 474
Score = 35.4 bits (80), Expect = 0.093
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 13 AAAEPA-RAPCGARTPGTRPGTRASSRRLHACARAGGGG--ARAAGAGFA-ERRAAAAEP 68
A ++PA + CG++ G G + A GGGG A AA A FA E+ AAA
Sbjct: 189 ANSKPAQKKSCGSKVAGGAGGGVSKPHAKLILAGGGGGGKAAAAAAASFAAEQAGAAALL 248
Query: 69 DVSAKMAGRSMQAARCPTDELSLTNCAVVNEKDFQSGQHV 108
+ A S+ AR P+ S ++ A + G+H+
Sbjct: 249 PLGAAADHHSLYKARTPSASASASSAASASAALAAPGKHL 288
>gi|223972704 hypothetical protein LOC284418 [Homo sapiens]
Length = 922
Score = 35.0 bits (79), Expect = 0.12
Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 3 PPLCPP-RAPQAAAEPARAPCGARTPGTRPGTRASSRRLHACARAGGGGARAAGAGFAER 61
P L PP +AP A+A P +AP P A S++ A A +R A A A
Sbjct: 434 PGLAPPQKAPAASAPPRKAPAVPAPSQKAPAVPAPSQK----APAIPAPSRKASAASASP 489
Query: 62 RAAAAEPDVSAKMAGRSMQAARCPT 86
R A+A P K S +A PT
Sbjct: 490 RKASAVPAPPQKTPPPSQKAPSVPT 514
>gi|239749693 PREDICTED: similar to hCG1806822 [Homo sapiens]
Length = 1180
Score = 35.0 bits (79), Expect = 0.12
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 8 PRAPQAAAEPARAPCGA--RTPGTRPGTRASSRRLHACARAGGGGA-RAAGAGFAERRAA 64
PR P + P PC R P +R SRR+ A GGA +AA A+ R A
Sbjct: 1066 PRGPSLRSHPRSGPCAGKPRAPRSRGAAEPPSRRVAAPGVGTAGGANKAAATRAAQARDA 1125
Query: 65 AAEPDVSAKMAGRSMQAA 82
+E A ++G + AA
Sbjct: 1126 RSERPRRAFVSGGAGAAA 1143
>gi|32171221 GRP1 (general receptor for phosphoinositides
1)-associated scaffold protein [Homo sapiens]
Length = 395
Score = 35.0 bits (79), Expect = 0.12
Identities = 31/70 (44%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 3 PPLCPPRAPQAAAEPARA--PCGARTP--GTRPGTRASSRRLHA--CARAGGGGARAA-G 55
PP PP P PARA P A TP G PG RA+ R + CA GGGG A G
Sbjct: 295 PPALPPPPP-----PARAFGPGPAETPAVGPGPGPRAALSRSASVRCAGPGGGGGGGAPG 349
Query: 56 AGFAERRAAA 65
A + E R A
Sbjct: 350 ALWTEAREQA 359
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 34.7 bits (78), Expect = 0.16
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 3 PPLCPPRAPQAAAEPARAPCGARTPGTRPGTRAS--SRRLHACARAGGGGARAAGAGFAE 60
PP PP+ P+ AA+ GA G P T+A+ S A +GG G G AE
Sbjct: 197 PPPAPPQ-PEGAADKGDPRTGAGGGGGSPCTKATPGSEPKGAAEGSGGDGEGPPGEAGAE 255
Query: 61 RRAAAAEPDVSAKMAGRSMQAARCP 85
+ ++A P S K RCP
Sbjct: 256 KSSSAVAPQRSRK--------KRCP 272
>gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 34.7 bits (78), Expect = 0.16
Identities = 29/76 (38%), Positives = 30/76 (39%), Gaps = 22/76 (28%)
Query: 5 LCPPRAPQAAAEPARAPCGARTPGTRPGTRASSRRLHACARAGGGGARA----------- 53
L PR A PA +R PG R R S RR AGGGGARA
Sbjct: 167 LASPRVSNAPTTPA-----SRNPGLRAQERQSGRRA-----AGGGGARAEPPRVPPCRPA 216
Query: 54 -AGAGFAERRAAAAEP 68
G RRAA A P
Sbjct: 217 GCSGGNRSRRAAGAGP 232
>gi|239741995 PREDICTED: hypothetical protein XP_002342368 [Homo
sapiens]
Length = 224
Score = 34.7 bits (78), Expect = 0.16
Identities = 29/76 (38%), Positives = 30/76 (39%), Gaps = 22/76 (28%)
Query: 5 LCPPRAPQAAAEPARAPCGARTPGTRPGTRASSRRLHACARAGGGGARA----------- 53
L PR A PA +R PG R R S RR AGGGGARA
Sbjct: 96 LASPRVSNAPTTPA-----SRNPGLRAQERQSGRRA-----AGGGGARAEPPRVPPCRPA 145
Query: 54 -AGAGFAERRAAAAEP 68
G RRAA A P
Sbjct: 146 GCSGGNRSRRAAGAGP 161
>gi|239756916 PREDICTED: hypothetical protein [Homo sapiens]
Length = 464
Score = 34.3 bits (77), Expect = 0.21
Identities = 31/98 (31%), Positives = 37/98 (37%), Gaps = 21/98 (21%)
Query: 6 CPPRAPQAAAEP--------ARAPCGARTPGTRPGTRASSRRLHACARAGGGGARAAGAG 57
CPP A + P A P G R G R G A +R G G AAG
Sbjct: 376 CPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTR---------GAGRSAAGDE 426
Query: 58 FAERRAAAAEPDVSAKMAGRSMQ----AARCPTDELSL 91
R A P SA ++GR + A RC + E L
Sbjct: 427 ARARGPAGRAPSPSAALSGRGDRGRTGATRCGSPEAGL 464
>gi|239751407 PREDICTED: hypothetical protein XP_002347839 [Homo
sapiens]
Length = 490
Score = 34.3 bits (77), Expect = 0.21
Identities = 31/98 (31%), Positives = 37/98 (37%), Gaps = 21/98 (21%)
Query: 6 CPPRAPQAAAEP--------ARAPCGARTPGTRPGTRASSRRLHACARAGGGGARAAGAG 57
CPP A + P A P G R G R G A +R G G AAG
Sbjct: 402 CPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTR---------GAGRSAAGDE 452
Query: 58 FAERRAAAAEPDVSAKMAGRSMQ----AARCPTDELSL 91
R A P SA ++GR + A RC + E L
Sbjct: 453 ARARGPAGRAPSPSAALSGRGDRGRTGATRCGSPEAGL 490
>gi|239745917 PREDICTED: hypothetical protein XP_002343616 [Homo
sapiens]
Length = 522
Score = 34.3 bits (77), Expect = 0.21
Identities = 31/98 (31%), Positives = 37/98 (37%), Gaps = 21/98 (21%)
Query: 6 CPPRAPQAAAEP--------ARAPCGARTPGTRPGTRASSRRLHACARAGGGGARAAGAG 57
CPP A + P A P G R G R G A +R G G AAG
Sbjct: 434 CPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTR---------GAGRSAAGDE 484
Query: 58 FAERRAAAAEPDVSAKMAGRSMQ----AARCPTDELSL 91
R A P SA ++GR + A RC + E L
Sbjct: 485 ARARGPAGRAPSPSAALSGRGDRGRTGATRCGSPEAGL 522
>gi|31542493 D site of albumin promoter (albumin D-box) binding
protein [Homo sapiens]
Length = 325
Score = 33.9 bits (76), Expect = 0.27
Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 2 APPLCPPRAPQAAAEPARAPCGARTPGTRPGTRASSRRLHACARAGGGGARAAGAGFAER 61
+PP PP P PAR P + PG+ S HA ARA G A AG R
Sbjct: 131 SPP--PPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPARAALGTASGHRAGLTSR 188
Query: 62 -RAAAAEPD 69
+ +PD
Sbjct: 189 DTPSPVDPD 197
>gi|239754651 PREDICTED: hypothetical protein XP_002346061 [Homo
sapiens]
Length = 368
Score = 33.9 bits (76), Expect = 0.27
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 10 APQAAAEPARAPCGARTPGTRPGTRASSRRLHACARAGG--GGARAAGAGFAERRAAAAE 67
+P+ PA+ P P G+R+ R L A G GGARAA + A AAAA
Sbjct: 279 SPEPLLPPAQGPPAPPRPQKARGSRSRRRYLWRWDSAAGVAGGARAALSSSAAEAAAAAA 338
Query: 68 PDVSAKM 74
+A+M
Sbjct: 339 AAAAARM 345
>gi|116256363 transmembrane protease, serine 13 [Homo sapiens]
Length = 567
Score = 33.9 bits (76), Expect = 0.27
Identities = 47/158 (29%), Positives = 62/158 (39%), Gaps = 31/158 (19%)
Query: 7 PPRAPQAAAEPARA----------------PCGARTPGTRPGTRASSRRLHA---CARAG 47
P R P A A PA+A P A GT PG + ++ A RA
Sbjct: 11 PARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRAS 70
Query: 48 GGGARAAGAGFAERRAAAAEP---DVSAKMAGRSMQAARCPTDELSLTNCAVVNEKDFQS 104
G A A A A+ A A P +S +GRS +AR + S T +V +
Sbjct: 71 PGRASPAQASPAQASPARASPALASLSRSSSGRS-SSARSASVTTSPTRVYLVRATPVGA 129
Query: 105 GQHVIVRTSPNHRYTFTLKTHPSVVPGSIAFSLPQRKW 142
V +R+SP T T S PG+ SLP+ W
Sbjct: 130 ---VPIRSSPARSAPATRATRES--PGT---SLPKFTW 159
>gi|153945765 mitogen-activated protein kinase kinase kinase 1 [Homo
sapiens]
Length = 1512
Score = 33.1 bits (74), Expect = 0.46
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 11 PQAAAEPARAPCGARTPGTR-----------PGTRASSRRLHACARAGGGGARAAGAGFA 59
P ++ P+ P A GT +R + + A G + A A
Sbjct: 85 PASSTSPSPEPADAAGSGTGFQPVAVPPPHGAASRGGAHLTESVAAPDSGASSPAAAEPG 144
Query: 60 ERRAAAAEPDVSAKMAGRSMQ 80
E+RA AAEP +A AGR M+
Sbjct: 145 EKRAPAAEPSPAAAPAGREME 165
>gi|169160624 PREDICTED: hypothetical protein [Homo sapiens]
Length = 284
Score = 33.1 bits (74), Expect = 0.46
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 7 PPRAPQAAAEPARAPCGARTPGTRPGTRASSRRLHACARAGGGGA----RAAGAGFAERR 62
PPR +A+ A A G + G PG + + ARAGGG A RA G R
Sbjct: 116 PPR--RASPRHAPAAAGGVSMGPSPGGKDGGAFIWGGARAGGGEALTRKRARGGAVPGDR 173
Query: 63 --AAAAEPDVSAKMAGRSMQAARCPTD 87
AA P + +A R RC D
Sbjct: 174 PGGGAASPLPAPLLASRPRPRGRCAPD 200
>gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo
sapiens]
Length = 316
Score = 33.1 bits (74), Expect = 0.46
Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 2 APPLCPPRAPQAAAEPARAPCGARTPGTRPGTRASSRRLHACARAGGGGARAA-----GA 56
+P C P+A + P +A C AR G G AS RRL GG G AA G
Sbjct: 110 SPGPCAPQALASLLGPGKAGCRARLQGGSSG--ASPRRL-----PGGRGPAAAFAVEPGT 162
Query: 57 GFAERRAAAAEPDVSAKMAG---RSMQAARCP 85
G R + A+ S + G S+Q R P
Sbjct: 163 GQRPRNTSLAQASRSGTVPGLPPASLQPLRVP 194
>gi|14211869 late cornified envelope 3D [Homo sapiens]
Length = 92
Score = 33.1 bits (74), Expect = 0.46
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 11/65 (16%)
Query: 4 PLCPPRAPQAAAEPARAPCGARTPGTRPGTRAS-----SRRLHACARA------GGGGAR 52
P CPP++P PA + C + G P + RR H C R G G +
Sbjct: 19 PKCPPKSPVQCLPPASSGCAPSSGGCGPSSEGGCFLNHHRRHHRCRRQRPNSCDRGSGQQ 78
Query: 53 AAGAG 57
G+G
Sbjct: 79 GGGSG 83
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,643,515
Number of Sequences: 37866
Number of extensions: 702522
Number of successful extensions: 4998
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 223
Number of HSP's that attempted gapping in prelim test: 4682
Number of HSP's gapped (non-prelim): 473
length of query: 405
length of database: 18,247,518
effective HSP length: 105
effective length of query: 300
effective length of database: 14,271,588
effective search space: 4281476400
effective search space used: 4281476400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.