Guide to the Human Genome
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Name: LOC348751 Sequence: fasta or formatted (259aa) NCBI GI: 239747958
Description:

PREDICTED: hypothetical protein isoform 4

Not currently referenced in the text

Other entries for this name:
alt mRNA {259aa} PREDICTED: hypothetical protein
alt mRNA {259aa} PREDICTED: hypothetical protein isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         26           3
 C cysteine            4.2         11           2
 D aspartate           3.1          8           3
 E glutamate           3.5          9           1
 F phenylalanine       2.7          7           2
 G glycine            14.3         37           4
 H histidine           1.9          5           1
 I isoleucine          2.3          6           2
 K lysine              4.2         11           2
 L leucine             5.8         15           1
 M methionine          0.4          1           1
 N asparagine          2.3          6           1
 P proline             8.9         23           2
 Q glutamine           3.5          9           1
 R arginine           13.5         35           2
 S serine              5.4         14           1
 T threonine           5.4         14           2
 V valine              5.4         14           2
 W tryptophan          2.7          7           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein isoform 4 
LOC348751             1.000   PREDICTED: hypothetical protein 
LOC348751             1.000   PREDICTED: hypothetical protein isoform 2 
LOC100287063          0.045   PREDICTED: hypothetical protein 
LOC100287063          0.045   PREDICTED: hypothetical protein XP_002342368 
ARL6IP4               0.032   SRp25 nuclear protein isoform 4 
ARL6IP4               0.032   SRp25 nuclear protein isoform 3 
ARL6IP4               0.032   SRp25 nuclear protein isoform 2 
ARL6IP4               0.032   SRp25 nuclear protein isoform 1 
LOC100293319          0.030   PREDICTED: hypothetical protein 
LOC728806             0.028   PREDICTED: similar to N-ethylmaleimide-sensitive fa...
LOC100294345          0.028   PREDICTED: similar to N-ethylmaleimide-sensitive fa...
LOC100291551          0.026   PREDICTED: hypothetical protein XP_002346445 
LOC728650             0.026   PREDICTED: hypothetical protein 
LOC338758             0.026   PREDICTED: hypothetical protein 
SNRPB                 0.026   small nuclear ribonucleoprotein polypeptide B/B' iso...
ZNRF2                 0.026   zinc finger/RING finger 2 
POU4F2                0.026   Brn3b POU domain transcription factor 
LOC338758             0.025   PREDICTED: hypothetical protein 
LOC338758             0.025   PREDICTED: hypothetical protein 
EVX2                  0.025   even-skipped homeobox 2 
SNRPB                 0.023   small nuclear ribonucleoprotein polypeptide B/B' isof...
AVEN                  0.023   cell death regulator aven 
SNRPN                 0.023   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.023   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.023   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.023   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.023   small nuclear ribonucleoprotein polypeptide N 
NFKBIE                0.021   nuclear factor of kappa light polypeptide gene enhan...
LOC284297             0.021   hypothetical protein LOC284297 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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