Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100287063 Sequence: fasta or formatted (224aa) NCBI GI: 239741995
Description:

PREDICTED: hypothetical protein XP_002342368

Not currently referenced in the text

Other entries for this name:
alt prot {295aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.2         34           3
 C cysteine            1.3          3           1
 D aspartate           0.0          0           0
 E glutamate           4.0          9           2
 F phenylalanine       1.3          3           1
 G glycine            17.0         38           4
 H histidine           1.3          3           1
 I isoleucine          0.9          2           1
 K lysine              1.3          3           1
 L leucine             5.4         12           2
 M methionine          0.9          2           1
 N asparagine          1.8          4           1
 P proline            11.6         26           3
 Q glutamine           4.9         11           4
 R arginine           13.4         30           2
 S serine              6.7         15           1
 T threonine           5.4         12           2
 V valine              4.9         11           1
 W tryptophan          1.3          3           1
 Y tyrosine            1.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342368 
LOC100287063          0.911   PREDICTED: hypothetical protein 
LOC338758             0.062   PREDICTED: hypothetical protein 
LOC338758             0.062   PREDICTED: hypothetical protein 
LOC338758             0.062   PREDICTED: hypothetical protein 
LOC100287104          0.055   PREDICTED: hypothetical protein XP_002343630 
LOC348751             0.055   PREDICTED: hypothetical protein 
LOC348751             0.055   PREDICTED: hypothetical protein isoform 4 
LOC348751             0.055   PREDICTED: hypothetical protein isoform 2 
FLJ37078              0.053   hypothetical protein LOC222183 
LOC100287499          0.050   PREDICTED: hypothetical protein 
LOC100287499          0.050   PREDICTED: hypothetical protein XP_002343643 
LOC100290023          0.046   PREDICTED: hypothetical protein XP_002348147 
LOC100290812          0.046   PREDICTED: hypothetical protein XP_002347678 
LOC100288205          0.046   PREDICTED: hypothetical protein XP_002343496 
MAGI2                 0.046   membrane associated guanylate kinase, WW and PDZ dom...
LOC100130360          0.046   PREDICTED: hypothetical protein 
BAT2                  0.043   HLA-B associated transcript-2 
LOC100292370          0.043   PREDICTED: hypothetical protein 
LOC100127891          0.043   PREDICTED: similar to hCG2042508 
LOC100127891          0.043   PREDICTED: similar to hCG2042508 
LOC100127891          0.043   PREDICTED: similar to hCG2042508 
LOC100129571          0.043   PREDICTED: similar to hCG1646049 
LOC100129571          0.043   PREDICTED: similar to hCG1646049 
LOC100287450          0.043   PREDICTED: hypothetical protein XP_002343550 
LOC100287417          0.043   PREDICTED: hypothetical protein XP_002343549 
LOC100287374          0.043   PREDICTED: hypothetical protein XP_002343548 
LOC100129571          0.043   PREDICTED: similar to hCG1646049 
MBD2                  0.043   methyl-CpG binding domain protein 2 testis-specific i...
MBD2                  0.043   methyl-CpG binding domain protein 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press