Guide to the Human Genome
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Name: LOC100293869 Sequence: fasta or formatted (464aa) NCBI GI: 239756916
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         43           2
 C cysteine            2.2         10           1
 D aspartate           2.8         13           1
 E glutamate           3.7         17           2
 F phenylalanine       2.2         10           1
 G glycine            10.6         49           3
 H histidine           1.9          9           1
 I isoleucine          1.3          6           1
 K lysine              1.9          9           1
 L leucine            11.2         52           3
 M methionine          1.3          6           1
 N asparagine          0.4          2           1
 P proline            12.1         56           2
 Q glutamine           4.5         21           2
 R arginine           12.7         59           2
 S serine              8.2         38           2
 T threonine           3.7         17           1
 V valine              6.9         32           2
 W tryptophan          2.2         10           1
 Y tyrosine            1.1          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289012          0.956   PREDICTED: hypothetical protein XP_002343616 
LOC100291040          0.802   PREDICTED: hypothetical protein XP_002347839 
LOC100131180          0.017   PREDICTED: hypothetical protein 
LOC100131180          0.017   PREDICTED: hypothetical protein 
LOC100131180          0.017   PREDICTED: hypothetical protein 
LOC100129463          0.016   PREDICTED: hypothetical protein 
LOC100129463          0.016   PREDICTED: hypothetical protein 
LOC100129463          0.016   PREDICTED: hypothetical protein 
ARHGEF15              0.015   Rho guanine exchange factor 15 
KPRP                  0.015   keratinocyte proline-rich protein 
WDR33                 0.015   WD repeat domain 33 isoform 1 
LOC100132234          0.014   PREDICTED: hypothetical protein LOC100132234 
HIVEP3                0.014   human immunodeficiency virus type I enhancer bindin...
HIVEP3                0.014   human immunodeficiency virus type I enhancer bindin...
FGF2                  0.013   fibroblast growth factor 2 
LOC100132234          0.013   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.013   PREDICTED: hypothetical protein LOC100132234 
MDFIC                 0.013   MyoD family inhibitor domain containing protein isof...
LOC100293812          0.012   PREDICTED: hypothetical protein 
LOC100289716          0.012   PREDICTED: hypothetical protein XP_002346898 
LOC100289602          0.012   PREDICTED: hypothetical protein XP_002342755 
LOC100289602          0.012   PREDICTED: hypothetical protein 
LOC100290023          0.012   PREDICTED: hypothetical protein XP_002348147 
PAPLN                 0.012   papilin 
NOTCH1                0.011   notch1 preproprotein 
LOC100293975          0.011   PREDICTED: hypothetical protein 
LOC100290812          0.011   PREDICTED: hypothetical protein XP_002347678 
ANKRD60               0.011   PREDICTED: ankyrin repeat domain 60 
LOC100288205          0.011   PREDICTED: hypothetical protein XP_002343496 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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