Guide to the Human Genome
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Name: FAM71E2 Sequence: fasta or formatted (922aa) NCBI GI: 223972704
Description:

hypothetical protein LOC284418

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         90           2
 C cysteine            1.2         11           1
 D aspartate           3.3         30           1
 E glutamate           6.1         56           2
 F phenylalanine       1.7         16           2
 G glycine             5.0         46           2
 H histidine           2.3         21           1
 I isoleucine          2.6         24           2
 K lysine              6.6         61           3
 L leucine             9.5         88           3
 M methionine          2.0         18           2
 N asparagine          1.2         11           1
 P proline            12.7        117           3
 Q glutamine           5.5         51           2
 R arginine            5.3         49           2
 S serine             10.5         97           3
 T threonine           6.0         55           2
 V valine              6.0         55           3
 W tryptophan          2.2         20           1
 Y tyrosine            0.7          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC284418 
FAM71C                0.039   hypothetical protein LOC196472 
FAM71D                0.037   hypothetical protein LOC161142 
FAM71B                0.036   family with sequence similarity 71, member B 
FAM71E1               0.036   hypothetical protein LOC112703 
FAM71A                0.036   hypothetical protein LOC149647 
NACA                  0.031   nascent polypeptide-associated complex alpha subuni...
TTN                   0.029   titin isoform N2-A 
FLJ22184              0.027   PREDICTED: hypothetical protein FLJ22184 
PRG4                  0.027   proteoglycan 4 isoform D 
PRG4                  0.027   proteoglycan 4 isoform C 
PRG4                  0.027   proteoglycan 4 isoform B 
PRG4                  0.027   proteoglycan 4 isoform A 
NEFH                  0.027   neurofilament, heavy polypeptide 200kDa 
FLJ22184              0.026   PREDICTED: hypothetical protein LOC80164 
LOC647546             0.026   PREDICTED: hypothetical protein 
FLJ22184              0.025   PREDICTED: hypothetical protein FLJ22184 
MLL2                  0.023   myeloid/lymphoid or mixed-lineage leukemia 2 
SAMD1                 0.023   sterile alpha motif domain containing 1 
TAF4                  0.023   TBP-associated factor 4 
RAPH1                 0.023   Ras association and pleckstrin homology domains 1 is...
MUC7                  0.023   mucin 7, secreted precursor 
MUC7                  0.023   mucin 7, secreted precursor 
MUC7                  0.023   mucin 7, secreted precursor 
SYN1                  0.022   synapsin I isoform Ia 
PCLO                  0.022   piccolo isoform 2 
PCLO                  0.022   piccolo isoform 1 
SYN1                  0.022   synapsin I isoform Ib 
FAM71F2               0.022   hypothetical protein LOC346653 isoform b 
KIAA0754              0.022   hypothetical protein LOC643314 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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