Guide to the Human Genome
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Name: LOC100289012 Sequence: fasta or formatted (522aa) NCBI GI: 239745917
Description:

PREDICTED: hypothetical protein XP_002343616

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         49           2
 C cysteine            2.1         11           1
 D aspartate           2.9         15           1
 E glutamate           3.3         17           2
 F phenylalanine       1.9         10           1
 G glycine            10.3         54           3
 H histidine           2.3         12           1
 I isoleucine          1.1          6           1
 K lysine              2.1         11           1
 L leucine            11.1         58           3
 M methionine          1.1          6           1
 N asparagine          0.8          4           1
 P proline            12.5         65           2
 Q glutamine           4.8         25           2
 R arginine           12.8         67           2
 S serine              8.0         42           2
 T threonine           4.0         21           1
 V valine              6.5         34           2
 W tryptophan          2.1         11           1
 Y tyrosine            0.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343616 
LOC100291040          0.862   PREDICTED: hypothetical protein XP_002347839 
LOC100293869          0.845   PREDICTED: hypothetical protein 
LOC100131180          0.015   PREDICTED: hypothetical protein 
LOC100131180          0.015   PREDICTED: hypothetical protein 
LOC100131180          0.015   PREDICTED: hypothetical protein 
LOC100129463          0.014   PREDICTED: hypothetical protein 
LOC100129463          0.014   PREDICTED: hypothetical protein 
LOC100129463          0.014   PREDICTED: hypothetical protein 
HIVEP3                0.014   human immunodeficiency virus type I enhancer bindin...
HIVEP3                0.013   human immunodeficiency virus type I enhancer bindin...
ARHGEF15              0.013   Rho guanine exchange factor 15 
SIX5                  0.013   sine oculis homeobox homolog 5 
LOC100132234          0.012   PREDICTED: hypothetical protein LOC100132234 
PRX                   0.012   periaxin isoform 2 
FGF2                  0.011   fibroblast growth factor 2 
LOC100132234          0.011   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.011   PREDICTED: hypothetical protein LOC100132234 
MDFIC                 0.011   MyoD family inhibitor domain containing protein isof...
NOTCH1                0.010   notch1 preproprotein 
LOC100293812          0.010   PREDICTED: hypothetical protein 
LOC100289716          0.010   PREDICTED: hypothetical protein XP_002346898 
LOC100289602          0.010   PREDICTED: hypothetical protein XP_002342755 
LOC100289602          0.010   PREDICTED: hypothetical protein 
SMARCD2               0.010   SWI/SNF-related matrix-associated actin-dependent r...
WDR33                 0.010   WD repeat domain 33 isoform 1 
LOC100290023          0.010   PREDICTED: hypothetical protein XP_002348147 
PAPLN                 0.010   papilin 
ARHGAP23              0.009   Rho GTPase activating protein 23 
CSTF2                 0.009   cleavage stimulation factor subunit 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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