Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100291040 Sequence: fasta or formatted (490aa) NCBI GI: 239751407
Description:

PREDICTED: hypothetical protein XP_002347839

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         49           2
 C cysteine            2.2         11           1
 D aspartate           2.9         14           1
 E glutamate           2.4         12           1
 F phenylalanine       1.8          9           1
 G glycine            11.2         55           3
 H histidine           1.8          9           1
 I isoleucine          1.0          5           1
 K lysine              1.8          9           1
 L leucine            10.8         53           3
 M methionine          1.2          6           1
 N asparagine          1.0          5           1
 P proline            12.2         60           2
 Q glutamine           5.3         26           2
 R arginine           12.7         62           2
 S serine              7.6         37           2
 T threonine           4.3         21           1
 V valine              6.7         33           2
 W tryptophan          2.2         11           1
 Y tyrosine            0.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347839 
LOC100289012          0.919   PREDICTED: hypothetical protein XP_002343616 
LOC100293869          0.756   PREDICTED: hypothetical protein 
LOC100131180          0.016   PREDICTED: hypothetical protein 
LOC100131180          0.016   PREDICTED: hypothetical protein 
LOC100131180          0.016   PREDICTED: hypothetical protein 
LOC100129463          0.015   PREDICTED: hypothetical protein 
LOC100129463          0.015   PREDICTED: hypothetical protein 
LOC100129463          0.015   PREDICTED: hypothetical protein 
SMARCD2               0.014   SWI/SNF-related matrix-associated actin-dependent r...
ARHGEF15              0.014   Rho guanine exchange factor 15 
LOC100134152          0.014   PREDICTED: similar to synaptotagmin XV-b 
LOC100132234          0.013   PREDICTED: hypothetical protein LOC100132234 
GRIK5                 0.012   glutamate receptor KA2 precursor 
HCN4                  0.012   hyperpolarization activated cyclic nucleotide-gated p...
FGF2                  0.012   fibroblast growth factor 2 
LOC100132234          0.012   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.012   PREDICTED: hypothetical protein LOC100132234 
BAT2                  0.012   HLA-B associated transcript-2 
MDFIC                 0.012   MyoD family inhibitor domain containing protein isof...
LOC100293812          0.011   PREDICTED: hypothetical protein 
LOC100289716          0.011   PREDICTED: hypothetical protein XP_002346898 
LOC100289602          0.011   PREDICTED: hypothetical protein XP_002342755 
LOC100289602          0.011   PREDICTED: hypothetical protein 
LOC100290023          0.011   PREDICTED: hypothetical protein XP_002348147 
MED25                 0.011   mediator complex subunit 25 
COL16A1               0.011   alpha 1 type XVI collagen precursor 
CITED4                0.011   Cbp/p300-interacting transactivator, with Glu/Asp-ri...
PSD                   0.011   pleckstrin and Sec7 domain containing 
PAPLN                 0.011   papilin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press