Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239740933
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo
sapiens]
(697 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo ... 1436 0.0
gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo ... 1433 0.0
gi|239756839 PREDICTED: hypothetical protein [Homo sapiens] 1361 0.0
gi|239745851 PREDICTED: hypothetical protein XP_002343605 [Homo ... 923 0.0
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 52 2e-06
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 52 2e-06
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 52 2e-06
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 52 2e-06
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 52 2e-06
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 52 2e-06
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 50 9e-06
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 50 9e-06
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 50 9e-06
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 50 9e-06
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 50 9e-06
gi|48762934 alpha 2 type I collagen [Homo sapiens] 48 3e-05
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 48 4e-05
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 48 4e-05
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 47 5e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 47 8e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 47 8e-05
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 46 1e-04
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] 46 1e-04
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 46 1e-04
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 46 1e-04
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 46 1e-04
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 46 1e-04
gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens] 46 1e-04
gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens] 46 1e-04
gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens] 46 1e-04
>gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo
sapiens]
Length = 697
Score = 1436 bits (3717), Expect = 0.0
Identities = 697/697 (100%), Positives = 697/697 (100%)
Query: 1 MGSWEEGITFCKLPTRGHRTLRTEGAEVTPACGYALAEGPREKKARLRGLRRPACVAGPR 60
MGSWEEGITFCKLPTRGHRTLRTEGAEVTPACGYALAEGPREKKARLRGLRRPACVAGPR
Sbjct: 1 MGSWEEGITFCKLPTRGHRTLRTEGAEVTPACGYALAEGPREKKARLRGLRRPACVAGPR 60
Query: 61 PPPQSQASSQCGGKMSAHCCRMSSTTWFWNTMVMGMLVSSTSGRSSVGPNTMATLCTDMR 120
PPPQSQASSQCGGKMSAHCCRMSSTTWFWNTMVMGMLVSSTSGRSSVGPNTMATLCTDMR
Sbjct: 61 PPPQSQASSQCGGKMSAHCCRMSSTTWFWNTMVMGMLVSSTSGRSSVGPNTMATLCTDMR 120
Query: 121 FCSPCSITLWQGCWKSIRRVSWLGAGSERTKSRTQRLRRAWSCNSGCSLMAAMNWRKCEK 180
FCSPCSITLWQGCWKSIRRVSWLGAGSERTKSRTQRLRRAWSCNSGCSLMAAMNWRKCEK
Sbjct: 121 FCSPCSITLWQGCWKSIRRVSWLGAGSERTKSRTQRLRRAWSCNSGCSLMAAMNWRKCEK 180
Query: 181 GKRGSGSSRKKSFRAPGSPACGPGRRPAGTPMPAALTPAAHVPRASTARMHCCTKRGTRL 240
GKRGSGSSRKKSFRAPGSPACGPGRRPAGTPMPAALTPAAHVPRASTARMHCCTKRGTRL
Sbjct: 181 GKRGSGSSRKKSFRAPGSPACGPGRRPAGTPMPAALTPAAHVPRASTARMHCCTKRGTRL 240
Query: 241 LSRSHSAASAQPNTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLE 300
LSRSHSAASAQPNTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLE
Sbjct: 241 LSRSHSAASAQPNTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLE 300
Query: 301 ELAELLPKRSLDPKSTLLLSLSSGGSSADWIPIASERRGLEPAAEALGSAYQLLDALSNG 360
ELAELLPKRSLDPKSTLLLSLSSGGSSADWIPIASERRGLEPAAEALGSAYQLLDALSNG
Sbjct: 301 ELAELLPKRSLDPKSTLLLSLSSGGSSADWIPIASERRGLEPAAEALGSAYQLLDALSNG 360
Query: 361 LMPGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWE 420
LMPGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWE
Sbjct: 361 LMPGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWE 420
Query: 421 QEVGSKALRGSPAHSSPALHPGVPGSVGAGEGVKGSQRHGDSTTSLIISYALVTIMDFPI 480
QEVGSKALRGSPAHSSPALHPGVPGSVGAGEGVKGSQRHGDSTTSLIISYALVTIMDFPI
Sbjct: 421 QEVGSKALRGSPAHSSPALHPGVPGSVGAGEGVKGSQRHGDSTTSLIISYALVTIMDFPI 480
Query: 481 PQGLALTTHPGWHSEAGGRRDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAA 540
PQGLALTTHPGWHSEAGGRRDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAA
Sbjct: 481 PQGLALTTHPGWHSEAGGRRDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAA 540
Query: 541 LRRAAQGAGSASGLLGGAVGARGRRRAHKPVVVGERLRGRGARVRTWRRGGGRVAQRGQL 600
LRRAAQGAGSASGLLGGAVGARGRRRAHKPVVVGERLRGRGARVRTWRRGGGRVAQRGQL
Sbjct: 541 LRRAAQGAGSASGLLGGAVGARGRRRAHKPVVVGERLRGRGARVRTWRRGGGRVAQRGQL 600
Query: 601 AHVLRRQVEGAAAGLTPHVPPVLGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRR 660
AHVLRRQVEGAAAGLTPHVPPVLGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRR
Sbjct: 601 AHVLRRQVEGAAAGLTPHVPPVLGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRR 660
Query: 661 REPEPGPPSPARTAPCSPALTPPPEKGPAPVACPPAL 697
REPEPGPPSPARTAPCSPALTPPPEKGPAPVACPPAL
Sbjct: 661 REPEPGPPSPARTAPCSPALTPPPEKGPAPVACPPAL 697
>gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo
sapiens]
Length = 697
Score = 1433 bits (3710), Expect = 0.0
Identities = 696/697 (99%), Positives = 696/697 (99%)
Query: 1 MGSWEEGITFCKLPTRGHRTLRTEGAEVTPACGYALAEGPREKKARLRGLRRPACVAGPR 60
MGSWEEGITFCKLPTRGHRTLRTEGAEVTPACGYALAEGPREKKARLRGLRRPACVAGPR
Sbjct: 1 MGSWEEGITFCKLPTRGHRTLRTEGAEVTPACGYALAEGPREKKARLRGLRRPACVAGPR 60
Query: 61 PPPQSQASSQCGGKMSAHCCRMSSTTWFWNTMVMGMLVSSTSGRSSVGPNTMATLCTDMR 120
PPPQSQASSQCGGKMSAHCCRMSSTTWFWNTMVMGMLVSSTSGRSSVGPNTMATLCTDMR
Sbjct: 61 PPPQSQASSQCGGKMSAHCCRMSSTTWFWNTMVMGMLVSSTSGRSSVGPNTMATLCTDMR 120
Query: 121 FCSPCSITLWQGCWKSIRRVSWLGAGSERTKSRTQRLRRAWSCNSGCSLMAAMNWRKCEK 180
FCSPCSITLWQGCWKSIRRVSWLGAGSERTKSRTQRLRRAWSCNSGCSLMAAMNWRKCEK
Sbjct: 121 FCSPCSITLWQGCWKSIRRVSWLGAGSERTKSRTQRLRRAWSCNSGCSLMAAMNWRKCEK 180
Query: 181 GKRGSGSSRKKSFRAPGSPACGPGRRPAGTPMPAALTPAAHVPRASTARMHCCTKRGTRL 240
GKRGSGSSRKKSFRAPGSPACGPGRRPAGTPMPAALTPAAHVPRASTARMHCCTKRGTRL
Sbjct: 181 GKRGSGSSRKKSFRAPGSPACGPGRRPAGTPMPAALTPAAHVPRASTARMHCCTKRGTRL 240
Query: 241 LSRSHSAASAQPNTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLE 300
LSRSHSAASAQPNTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLE
Sbjct: 241 LSRSHSAASAQPNTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLE 300
Query: 301 ELAELLPKRSLDPKSTLLLSLSSGGSSADWIPIASERRGLEPAAEALGSAYQLLDALSNG 360
ELAELLPKRSLDPKSTLLLSLSSGGSSADWIPIASERRGLEPAAEALGSAYQLLDALSNG
Sbjct: 301 ELAELLPKRSLDPKSTLLLSLSSGGSSADWIPIASERRGLEPAAEALGSAYQLLDALSNG 360
Query: 361 LMPGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWE 420
LMPGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWE
Sbjct: 361 LMPGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWE 420
Query: 421 QEVGSKALRGSPAHSSPALHPGVPGSVGAGEGVKGSQRHGDSTTSLIISYALVTIMDFPI 480
QEVGSKALRGSPAHSSPALHPGVPGSVGAGEGVKGSQRHGDSTTSLIISYALVTIMDFPI
Sbjct: 421 QEVGSKALRGSPAHSSPALHPGVPGSVGAGEGVKGSQRHGDSTTSLIISYALVTIMDFPI 480
Query: 481 PQGLALTTHPGWHSEAGGRRDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAA 540
PQGLALTTHPGWHSEAGGRRDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAA
Sbjct: 481 PQGLALTTHPGWHSEAGGRRDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAA 540
Query: 541 LRRAAQGAGSASGLLGGAVGARGRRRAHKPVVVGERLRGRGARVRTWRRGGGRVAQRGQL 600
LRRAAQGAGSASGLLGGAVGARGRRRAHKPVVVGERLRGRGARV TWRRGGGRVAQRGQL
Sbjct: 541 LRRAAQGAGSASGLLGGAVGARGRRRAHKPVVVGERLRGRGARVGTWRRGGGRVAQRGQL 600
Query: 601 AHVLRRQVEGAAAGLTPHVPPVLGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRR 660
AHVLRRQVEGAAAGLTPHVPPVLGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRR
Sbjct: 601 AHVLRRQVEGAAAGLTPHVPPVLGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRR 660
Query: 661 REPEPGPPSPARTAPCSPALTPPPEKGPAPVACPPAL 697
REPEPGPPSPARTAPCSPALTPPPEKGPAPVACPPAL
Sbjct: 661 REPEPGPPSPARTAPCSPALTPPPEKGPAPVACPPAL 697
>gi|239756839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 743
Score = 1361 bits (3523), Expect = 0.0
Identities = 679/743 (91%), Positives = 684/743 (92%), Gaps = 46/743 (6%)
Query: 1 MGSWEEGITFCKLPTRGHRTLRTEGAEVTPACGYALAEGPREKKARLRGLRRPACVAGPR 60
MGSWEEGITFCKLPTRGHRTLRTEGAEVTPACGYALAEGPREKKARLRGLRRPACVAGPR
Sbjct: 1 MGSWEEGITFCKLPTRGHRTLRTEGAEVTPACGYALAEGPREKKARLRGLRRPACVAGPR 60
Query: 61 PPPQSQASSQCGGKMSAHCCRMSSTTWFWNTMVMGMLVSSTSGRSSVGPNTMATLCTDMR 120
PPPQSQASS CGGKMSAHCCRMSSTTWFWNTMVMGMLVSSTSGRSSVGPNTMATLCTDMR
Sbjct: 61 PPPQSQASSHCGGKMSAHCCRMSSTTWFWNTMVMGMLVSSTSGRSSVGPNTMATLCTDMR 120
Query: 121 FCSPCSITLWQGCWKSIRRVSWLGAGSERTKSRTQRLRRAWSCNSGCSLMAAMNWRKCEK 180
FCSPCSITLWQGCWKSIRRVSWLGAGSERTKSRTQRLRRAWSCNSGCSLMAAMNWRKCEK
Sbjct: 121 FCSPCSITLWQGCWKSIRRVSWLGAGSERTKSRTQRLRRAWSCNSGCSLMAAMNWRKCEK 180
Query: 181 GKRGSGSSRKKSFRAPGSPACGPGRRPAGTPMPAALTPAAHVPRASTARMHCCTKRGTRL 240
GKRGSGSSRKKSFRAPGSPACGPGRRPAGTPMPAALTPAAHVPRASTARMHCCTKRGTRL
Sbjct: 181 GKRGSGSSRKKSFRAPGSPACGPGRRPAGTPMPAALTPAAHVPRASTARMHCCTKRGTRL 240
Query: 241 LSRSHSAASAQPNTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLE 300
LSRSHSAASAQPNTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLE
Sbjct: 241 LSRSHSAASAQPNTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLE 300
Query: 301 ELAELLPKRSLDPKSTLLLSLSSGGSSADWIPIASERRGLEPAAEALGSAYQLLDALSNG 360
ELAELLPKRSLDPKSTLLLSLSSGGSSADWIPIASERRGLEPAAEALGSAYQLLDALSNG
Sbjct: 301 ELAELLPKRSLDPKSTLLLSLSSGGSSADWIPIASERRGLEPAAEALGSAYQLLDALSNG 360
Query: 361 LMPGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWE 420
LMPGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWE
Sbjct: 361 LMPGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWE 420
Query: 421 QEVGSKALR-GSPAHSSPALHPGVPGS--VGAGEGV-----KGSQ--------------- 457
QEVGSKALR SP H A P +P + + G+G+ KGS
Sbjct: 421 QEVGSKALRVPSPVHKQVAALPLLPQADHLLDGQGLREGKRKGSMSPNFQEAPCSKPQLT 480
Query: 458 -----------------------RHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHS 494
RHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHS
Sbjct: 481 QLLTGLVVEAHRAPLDPSIPYLCRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHS 540
Query: 495 EAGGRRDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGL 554
EAGGRRDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGL
Sbjct: 541 EAGGRRDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGL 600
Query: 555 LGGAVGARGRRRAHKPVVVGERLRGRGARVRTWRRGGGRVAQRGQLAHVLRRQVEGAAAG 614
LGGAVGARGRRRAHKPVVVGERLRGRGARVRTWRRGGGRVAQRGQLAHVLRRQVEGAAAG
Sbjct: 601 LGGAVGARGRRRAHKPVVVGERLRGRGARVRTWRRGGGRVAQRGQLAHVLRRQVEGAAAG 660
Query: 615 LTPHVPPVLGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEPGPPSPARTA 674
LTPHVPPVLGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEPGPPSPARTA
Sbjct: 661 LTPHVPPVLGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEPGPPSPARTA 720
Query: 675 PCSPALTPPPEKGPAPVACPPAL 697
PCSPALTPPPEKGPAPVACPPAL
Sbjct: 721 PCSPALTPPPEKGPAPVACPPAL 743
>gi|239745851 PREDICTED: hypothetical protein XP_002343605 [Homo
sapiens]
Length = 500
Score = 923 bits (2386), Expect = 0.0
Identities = 445/445 (100%), Positives = 445/445 (100%)
Query: 1 MGSWEEGITFCKLPTRGHRTLRTEGAEVTPACGYALAEGPREKKARLRGLRRPACVAGPR 60
MGSWEEGITFCKLPTRGHRTLRTEGAEVTPACGYALAEGPREKKARLRGLRRPACVAGPR
Sbjct: 1 MGSWEEGITFCKLPTRGHRTLRTEGAEVTPACGYALAEGPREKKARLRGLRRPACVAGPR 60
Query: 61 PPPQSQASSQCGGKMSAHCCRMSSTTWFWNTMVMGMLVSSTSGRSSVGPNTMATLCTDMR 120
PPPQSQASSQCGGKMSAHCCRMSSTTWFWNTMVMGMLVSSTSGRSSVGPNTMATLCTDMR
Sbjct: 61 PPPQSQASSQCGGKMSAHCCRMSSTTWFWNTMVMGMLVSSTSGRSSVGPNTMATLCTDMR 120
Query: 121 FCSPCSITLWQGCWKSIRRVSWLGAGSERTKSRTQRLRRAWSCNSGCSLMAAMNWRKCEK 180
FCSPCSITLWQGCWKSIRRVSWLGAGSERTKSRTQRLRRAWSCNSGCSLMAAMNWRKCEK
Sbjct: 121 FCSPCSITLWQGCWKSIRRVSWLGAGSERTKSRTQRLRRAWSCNSGCSLMAAMNWRKCEK 180
Query: 181 GKRGSGSSRKKSFRAPGSPACGPGRRPAGTPMPAALTPAAHVPRASTARMHCCTKRGTRL 240
GKRGSGSSRKKSFRAPGSPACGPGRRPAGTPMPAALTPAAHVPRASTARMHCCTKRGTRL
Sbjct: 181 GKRGSGSSRKKSFRAPGSPACGPGRRPAGTPMPAALTPAAHVPRASTARMHCCTKRGTRL 240
Query: 241 LSRSHSAASAQPNTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLE 300
LSRSHSAASAQPNTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLE
Sbjct: 241 LSRSHSAASAQPNTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLE 300
Query: 301 ELAELLPKRSLDPKSTLLLSLSSGGSSADWIPIASERRGLEPAAEALGSAYQLLDALSNG 360
ELAELLPKRSLDPKSTLLLSLSSGGSSADWIPIASERRGLEPAAEALGSAYQLLDALSNG
Sbjct: 301 ELAELLPKRSLDPKSTLLLSLSSGGSSADWIPIASERRGLEPAAEALGSAYQLLDALSNG 360
Query: 361 LMPGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWE 420
LMPGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWE
Sbjct: 361 LMPGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWE 420
Query: 421 QEVGSKALRGSPAHSSPALHPGVPG 445
QEVGSKALRGSPAHSSPALHPGVPG
Sbjct: 421 QEVGSKALRGSPAHSSPALHPGVPG 445
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 51.6 bits (122), Expect = 2e-06
Identities = 83/323 (25%), Positives = 106/323 (32%), Gaps = 55/323 (17%)
Query: 392 GSEALRGSSA---PHPLVPGAVGAEGVRGLWEQE--VGSKALRGSPAHSSPALHPGVPGS 446
G + +G A P LV G G G G+ G G P P PG+PG+
Sbjct: 435 GEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGA 494
Query: 447 VG---------------AGEGVKGSQRHG-DSTTSLIISYALVTIMDFPIPQGLALTTHP 490
G G+G KG ++ I+ A + + P P GL P
Sbjct: 495 DGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGP 554
Query: 491 GWHSEAGGRRDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGS 550
+ G + QG RG G GP + G + GR A GRG A+G
Sbjct: 555 VGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPG-KRGRPGADGGRGMPGEPGAKGDRG 613
Query: 551 ASGLLG--GAVGARGRRRAHKP--VVVGERLRGRGARVRTWRRGGGRVAQRGQLAHVLRR 606
GL G G G RG R P + +RG + R G RG L R
Sbjct: 614 FDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGP-RGLPGEAGPRGLLG---PR 669
Query: 607 QVEGAAAGLTPHVPPVLGA-APQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEP 665
GA P P + G P P + P G P +
Sbjct: 670 GTPGA-----PGQPGMAGVDGPPGPKGNMGPQGEPGP-------------------PGQQ 705
Query: 666 GPPSPARTAPCSPALTPPPEKGP 688
G P P + PP EKGP
Sbjct: 706 GNPGPQGLPGPQGPIGPPGEKGP 728
Score = 45.4 bits (106), Expect = 2e-04
Identities = 77/305 (25%), Positives = 100/305 (32%), Gaps = 51/305 (16%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
+ G +G + P P G VG +G G E G RG P P G+PG+ G
Sbjct: 962 QRGETGFQGKTGP-PGPGGVVGPQGPTG----ETGPIGERGHPGPPGPPGEQGLPGAAGK 1016
Query: 450 GEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQVVQ 509
EG KG P PQG++ P G R Q
Sbjct: 1017 -EGAKGD----------------------PGPQGISGKDGPAGLRGFPGERGLPGAQGAP 1053
Query: 510 GLRGPHGRRGPQVQAGWQAGRQAAALGRGAAL--RRAAQGAGSASGLLG-----GAVGAR 562
GL+G G +GP G R +A L R QG +G G G G
Sbjct: 1054 GLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPA 1113
Query: 563 GRRRAHKPVVVGERLRGRGARVRTWRRGGGRVAQRGQLAHVLRRQVEGAAAGLTPHVPPV 622
GR PV + G+ G +G++ ++ +G P PP
Sbjct: 1114 GRDGVQGPVGLPGPAGPAGS--------PGEDGDKGEIGEPGQKGSKGDKGENGPPGPPG 1165
Query: 623 LGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEPGPPSPARTAPCSPALTP 682
L P + DG P +G+ Q R PGPP P P
Sbjct: 1166 L-QGPVGAPGIAGGDGEPGP---RGQQGMFGQKGDEGAR-GFPGPPGPIGLQGLP---GP 1217
Query: 683 PPEKG 687
P EKG
Sbjct: 1218 PGEKG 1222
Score = 42.7 bits (99), Expect = 0.001
Identities = 86/346 (24%), Positives = 109/346 (31%), Gaps = 69/346 (19%)
Query: 390 EAGSEALRGSSAPH--PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSV 447
E G +G+ P P G +G G +G G L G P P HPG G
Sbjct: 698 EPGPPGQQGNPGPQGLPGPQGPIGPPGEKG----PQGKPGLAGLPGADGPPGHPGKEGQS 753
Query: 448 GAGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGL----------------ALTTHPG 491
G + G + +P P+G+ PG
Sbjct: 754 GEKGALGPPGPQGP--------------IGYPGPRGVKGADGVRGLKGSKGEKGEDGFPG 799
Query: 492 WHSEAGGRRD-GGAGQV----VQGLRGPHGRRGPQVQAG--WQAGRQAAALGRGAALRRA 544
+ + G + D G GQ+ G GP GR GP G QAG + G
Sbjct: 800 FKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPG 859
Query: 545 AQGAGSASGLLG--GAVGARGRRRAHKPVVVGERLRGRGARVRTWRRGGGRVAQRGQLAH 602
QG ++G G GA G +G R V + RG R T RG RG
Sbjct: 860 RQGPKGSTGFPGFPGANGEKGARG------VAGKPGPRGQRGPTGPRG-----SRGARGP 908
Query: 603 VLRRQVEGAAAGLTPHVPPVLGA--APQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRR 660
+ +G + G P PP PQ PV P G P L G Q
Sbjct: 909 TGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQR-GETG 967
Query: 661 REPEPGPPSP----------ARTAPCSPALTPPPEKGPAPVACPPA 696
+ + GPP P T P P P P P A
Sbjct: 968 FQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGA 1013
Score = 35.8 bits (81), Expect = 0.14
Identities = 42/142 (29%), Positives = 51/142 (35%), Gaps = 41/142 (28%)
Query: 392 GSEALRGSSAP--HPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVG- 448
G E LRG P +PGA G +G G G L+G P HPG+ G +G
Sbjct: 1417 GPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPP-GLPGLKGDPGSKGEKGHPGLIGLIGP 1475
Query: 449 -AGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGG---- 503
+G KG +GL PG G + DGG
Sbjct: 1476 PGEQGEKGD-------------------------RGL-----PGTQGSPGAKGDGGIPGP 1505
Query: 504 AGQVVQGLRGPHGRRGPQVQAG 525
AG + G GP G GPQ G
Sbjct: 1506 AGPL--GPPGPPGLPGPQGPKG 1525
Score = 31.2 bits (69), Expect = 3.4
Identities = 36/136 (26%), Positives = 45/136 (33%), Gaps = 31/136 (22%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
+ G E RG P PG +G +G+ G G K G P PG G G
Sbjct: 1193 QKGDEGARGFPGP----PGPIGLQGLPG----PPGEKGENGDVGPMGPPGPPGPRGPQGP 1244
Query: 450 GEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQVVQ 509
G G Q S S+ G+ PG G + G G
Sbjct: 1245 N-GADGPQGPPGSVGSV---------------GGVGEKGEPGEAGNPGPPGEAGVG---- 1284
Query: 510 GLRGPHGRRGPQVQAG 525
GP G RG + +AG
Sbjct: 1285 ---GPKGERGEKGEAG 1297
Score = 31.2 bits (69), Expect = 3.4
Identities = 51/188 (27%), Positives = 64/188 (34%), Gaps = 23/188 (12%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAGE 451
G G P P PG G +GV G + E G G P S A PG PG G
Sbjct: 1321 GPVGFPGDPGP-PGEPGPAGQDGVGGD-KGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPG 1378
Query: 452 GVKGSQRHGDSTTSLIISYALVTIMDFPI-PQGLA-------LTTHPGWHSEAG----GR 499
R G+ P+ PQG A L PG E G
Sbjct: 1379 AAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAG 1438
Query: 500 RDGGAGQV----VQGLRGPHGRRGPQVQAG-----WQAGRQAAALGRGAALRRAAQGAGS 550
+DG G + + GL+G G +G + G G Q RG + + GA
Sbjct: 1439 QDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKG 1498
Query: 551 ASGLLGGA 558
G+ G A
Sbjct: 1499 DGGIPGPA 1506
Score = 30.8 bits (68), Expect = 4.4
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGL--WEQEVGSKALRGSPAHSSPALHPGVPGSV 447
E G L G P PG G +G RGL + G+K G P + P PG PG
Sbjct: 1463 EKGHPGLIGLIGP----PGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLP 1518
Query: 448 GAGEGVKGSQ 457
G +G KG++
Sbjct: 1519 GP-QGPKGNK 1527
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 51.6 bits (122), Expect = 2e-06
Identities = 83/323 (25%), Positives = 106/323 (32%), Gaps = 55/323 (17%)
Query: 392 GSEALRGSSA---PHPLVPGAVGAEGVRGLWEQE--VGSKALRGSPAHSSPALHPGVPGS 446
G + +G A P LV G G G G+ G G P P PG+PG+
Sbjct: 384 GEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGA 443
Query: 447 VG---------------AGEGVKGSQRHG-DSTTSLIISYALVTIMDFPIPQGLALTTHP 490
G G+G KG ++ I+ A + + P P GL P
Sbjct: 444 DGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGP 503
Query: 491 GWHSEAGGRRDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGS 550
+ G + QG RG G GP + G + GR A GRG A+G
Sbjct: 504 VGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPG-KRGRPGADGGRGMPGEPGAKGDRG 562
Query: 551 ASGLLG--GAVGARGRRRAHKP--VVVGERLRGRGARVRTWRRGGGRVAQRGQLAHVLRR 606
GL G G G RG R P + +RG + R G RG L R
Sbjct: 563 FDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGP-RGLPGEAGPRGLLG---PR 618
Query: 607 QVEGAAAGLTPHVPPVLGA-APQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEP 665
GA P P + G P P + P G P +
Sbjct: 619 GTPGA-----PGQPGMAGVDGPPGPKGNMGPQGEPGP-------------------PGQQ 654
Query: 666 GPPSPARTAPCSPALTPPPEKGP 688
G P P + PP EKGP
Sbjct: 655 GNPGPQGLPGPQGPIGPPGEKGP 677
Score = 45.4 bits (106), Expect = 2e-04
Identities = 77/305 (25%), Positives = 100/305 (32%), Gaps = 51/305 (16%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
+ G +G + P P G VG +G G E G RG P P G+PG+ G
Sbjct: 911 QRGETGFQGKTGP-PGPGGVVGPQGPTG----ETGPIGERGHPGPPGPPGEQGLPGAAGK 965
Query: 450 GEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQVVQ 509
EG KG P PQG++ P G R Q
Sbjct: 966 -EGAKGD----------------------PGPQGISGKDGPAGLRGFPGERGLPGAQGAP 1002
Query: 510 GLRGPHGRRGPQVQAGWQAGRQAAALGRGAAL--RRAAQGAGSASGLLG-----GAVGAR 562
GL+G G +GP G R +A L R QG +G G G G
Sbjct: 1003 GLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPA 1062
Query: 563 GRRRAHKPVVVGERLRGRGARVRTWRRGGGRVAQRGQLAHVLRRQVEGAAAGLTPHVPPV 622
GR PV + G+ G +G++ ++ +G P PP
Sbjct: 1063 GRDGVQGPVGLPGPAGPAGS--------PGEDGDKGEIGEPGQKGSKGDKGENGPPGPPG 1114
Query: 623 LGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEPGPPSPARTAPCSPALTP 682
L P + DG P +G+ Q R PGPP P P
Sbjct: 1115 L-QGPVGAPGIAGGDGEPGP---RGQQGMFGQKGDEGAR-GFPGPPGPIGLQGLP---GP 1166
Query: 683 PPEKG 687
P EKG
Sbjct: 1167 PGEKG 1171
Score = 42.7 bits (99), Expect = 0.001
Identities = 86/346 (24%), Positives = 109/346 (31%), Gaps = 69/346 (19%)
Query: 390 EAGSEALRGSSAPH--PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSV 447
E G +G+ P P G +G G +G G L G P P HPG G
Sbjct: 647 EPGPPGQQGNPGPQGLPGPQGPIGPPGEKG----PQGKPGLAGLPGADGPPGHPGKEGQS 702
Query: 448 GAGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGL----------------ALTTHPG 491
G + G + +P P+G+ PG
Sbjct: 703 GEKGALGPPGPQGP--------------IGYPGPRGVKGADGVRGLKGSKGEKGEDGFPG 748
Query: 492 WHSEAGGRRD-GGAGQV----VQGLRGPHGRRGPQVQAG--WQAGRQAAALGRGAALRRA 544
+ + G + D G GQ+ G GP GR GP G QAG + G
Sbjct: 749 FKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPG 808
Query: 545 AQGAGSASGLLG--GAVGARGRRRAHKPVVVGERLRGRGARVRTWRRGGGRVAQRGQLAH 602
QG ++G G GA G +G R V + RG R T RG RG
Sbjct: 809 RQGPKGSTGFPGFPGANGEKGARG------VAGKPGPRGQRGPTGPRG-----SRGARGP 857
Query: 603 VLRRQVEGAAAGLTPHVPPVLGA--APQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRR 660
+ +G + G P PP PQ PV P G P L G Q
Sbjct: 858 TGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQR-GETG 916
Query: 661 REPEPGPPSP----------ARTAPCSPALTPPPEKGPAPVACPPA 696
+ + GPP P T P P P P P A
Sbjct: 917 FQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGA 962
Score = 35.8 bits (81), Expect = 0.14
Identities = 42/142 (29%), Positives = 51/142 (35%), Gaps = 41/142 (28%)
Query: 392 GSEALRGSSAP--HPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVG- 448
G E LRG P +PGA G +G G G L+G P HPG+ G +G
Sbjct: 1366 GPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPP-GLPGLKGDPGSKGEKGHPGLIGLIGP 1424
Query: 449 -AGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGG---- 503
+G KG +GL PG G + DGG
Sbjct: 1425 PGEQGEKGD-------------------------RGL-----PGTQGSPGAKGDGGIPGP 1454
Query: 504 AGQVVQGLRGPHGRRGPQVQAG 525
AG + G GP G GPQ G
Sbjct: 1455 AGPL--GPPGPPGLPGPQGPKG 1474
Score = 31.2 bits (69), Expect = 3.4
Identities = 36/136 (26%), Positives = 45/136 (33%), Gaps = 31/136 (22%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
+ G E RG P PG +G +G+ G G K G P PG G G
Sbjct: 1142 QKGDEGARGFPGP----PGPIGLQGLPG----PPGEKGENGDVGPMGPPGPPGPRGPQGP 1193
Query: 450 GEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQVVQ 509
G G Q S S+ G+ PG G + G G
Sbjct: 1194 N-GADGPQGPPGSVGSV---------------GGVGEKGEPGEAGNPGPPGEAGVG---- 1233
Query: 510 GLRGPHGRRGPQVQAG 525
GP G RG + +AG
Sbjct: 1234 ---GPKGERGEKGEAG 1246
Score = 31.2 bits (69), Expect = 3.4
Identities = 51/188 (27%), Positives = 64/188 (34%), Gaps = 23/188 (12%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAGE 451
G G P P PG G +GV G + E G G P S A PG PG G
Sbjct: 1270 GPVGFPGDPGP-PGEPGPAGQDGVGGD-KGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPG 1327
Query: 452 GVKGSQRHGDSTTSLIISYALVTIMDFPI-PQGLA-------LTTHPGWHSEAG----GR 499
R G+ P+ PQG A L PG E G
Sbjct: 1328 AAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAG 1387
Query: 500 RDGGAGQV----VQGLRGPHGRRGPQVQAG-----WQAGRQAAALGRGAALRRAAQGAGS 550
+DG G + + GL+G G +G + G G Q RG + + GA
Sbjct: 1388 QDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKG 1447
Query: 551 ASGLLGGA 558
G+ G A
Sbjct: 1448 DGGIPGPA 1455
Score = 30.8 bits (68), Expect = 4.4
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGL--WEQEVGSKALRGSPAHSSPALHPGVPGSV 447
E G L G P PG G +G RGL + G+K G P + P PG PG
Sbjct: 1412 EKGHPGLIGLIGP----PGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLP 1467
Query: 448 GAGEGVKGSQ 457
G +G KG++
Sbjct: 1468 GP-QGPKGNK 1476
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 51.6 bits (122), Expect = 2e-06
Identities = 83/323 (25%), Positives = 106/323 (32%), Gaps = 55/323 (17%)
Query: 392 GSEALRGSSA---PHPLVPGAVGAEGVRGLWEQE--VGSKALRGSPAHSSPALHPGVPGS 446
G + +G A P LV G G G G+ G G P P PG+PG+
Sbjct: 423 GEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGA 482
Query: 447 VG---------------AGEGVKGSQRHG-DSTTSLIISYALVTIMDFPIPQGLALTTHP 490
G G+G KG ++ I+ A + + P P GL P
Sbjct: 483 DGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGP 542
Query: 491 GWHSEAGGRRDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGS 550
+ G + QG RG G GP + G + GR A GRG A+G
Sbjct: 543 VGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPG-KRGRPGADGGRGMPGEPGAKGDRG 601
Query: 551 ASGLLG--GAVGARGRRRAHKP--VVVGERLRGRGARVRTWRRGGGRVAQRGQLAHVLRR 606
GL G G G RG R P + +RG + R G RG L R
Sbjct: 602 FDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGP-RGLPGEAGPRGLLG---PR 657
Query: 607 QVEGAAAGLTPHVPPVLGA-APQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEP 665
GA P P + G P P + P G P +
Sbjct: 658 GTPGA-----PGQPGMAGVDGPPGPKGNMGPQGEPGP-------------------PGQQ 693
Query: 666 GPPSPARTAPCSPALTPPPEKGP 688
G P P + PP EKGP
Sbjct: 694 GNPGPQGLPGPQGPIGPPGEKGP 716
Score = 45.4 bits (106), Expect = 2e-04
Identities = 77/305 (25%), Positives = 100/305 (32%), Gaps = 51/305 (16%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
+ G +G + P P G VG +G G E G RG P P G+PG+ G
Sbjct: 950 QRGETGFQGKTGP-PGPGGVVGPQGPTG----ETGPIGERGHPGPPGPPGEQGLPGAAGK 1004
Query: 450 GEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQVVQ 509
EG KG P PQG++ P G R Q
Sbjct: 1005 -EGAKGD----------------------PGPQGISGKDGPAGLRGFPGERGLPGAQGAP 1041
Query: 510 GLRGPHGRRGPQVQAGWQAGRQAAALGRGAAL--RRAAQGAGSASGLLG-----GAVGAR 562
GL+G G +GP G R +A L R QG +G G G G
Sbjct: 1042 GLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPA 1101
Query: 563 GRRRAHKPVVVGERLRGRGARVRTWRRGGGRVAQRGQLAHVLRRQVEGAAAGLTPHVPPV 622
GR PV + G+ G +G++ ++ +G P PP
Sbjct: 1102 GRDGVQGPVGLPGPAGPAGS--------PGEDGDKGEIGEPGQKGSKGDKGENGPPGPPG 1153
Query: 623 LGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEPGPPSPARTAPCSPALTP 682
L P + DG P +G+ Q R PGPP P P
Sbjct: 1154 L-QGPVGAPGIAGGDGEPGP---RGQQGMFGQKGDEGAR-GFPGPPGPIGLQGLP---GP 1205
Query: 683 PPEKG 687
P EKG
Sbjct: 1206 PGEKG 1210
Score = 42.7 bits (99), Expect = 0.001
Identities = 86/346 (24%), Positives = 109/346 (31%), Gaps = 69/346 (19%)
Query: 390 EAGSEALRGSSAPH--PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSV 447
E G +G+ P P G +G G +G G L G P P HPG G
Sbjct: 686 EPGPPGQQGNPGPQGLPGPQGPIGPPGEKG----PQGKPGLAGLPGADGPPGHPGKEGQS 741
Query: 448 GAGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGL----------------ALTTHPG 491
G + G + +P P+G+ PG
Sbjct: 742 GEKGALGPPGPQGP--------------IGYPGPRGVKGADGVRGLKGSKGEKGEDGFPG 787
Query: 492 WHSEAGGRRD-GGAGQV----VQGLRGPHGRRGPQVQAG--WQAGRQAAALGRGAALRRA 544
+ + G + D G GQ+ G GP GR GP G QAG + G
Sbjct: 788 FKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPG 847
Query: 545 AQGAGSASGLLG--GAVGARGRRRAHKPVVVGERLRGRGARVRTWRRGGGRVAQRGQLAH 602
QG ++G G GA G +G R V + RG R T RG RG
Sbjct: 848 RQGPKGSTGFPGFPGANGEKGARG------VAGKPGPRGQRGPTGPRG-----SRGARGP 896
Query: 603 VLRRQVEGAAAGLTPHVPPVLGA--APQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRR 660
+ +G + G P PP PQ PV P G P L G Q
Sbjct: 897 TGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQR-GETG 955
Query: 661 REPEPGPPSP----------ARTAPCSPALTPPPEKGPAPVACPPA 696
+ + GPP P T P P P P P A
Sbjct: 956 FQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGA 1001
Score = 35.8 bits (81), Expect = 0.14
Identities = 42/142 (29%), Positives = 51/142 (35%), Gaps = 41/142 (28%)
Query: 392 GSEALRGSSAP--HPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVG- 448
G E LRG P +PGA G +G G G L+G P HPG+ G +G
Sbjct: 1405 GPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPP-GLPGLKGDPGSKGEKGHPGLIGLIGP 1463
Query: 449 -AGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGG---- 503
+G KG +GL PG G + DGG
Sbjct: 1464 PGEQGEKGD-------------------------RGL-----PGTQGSPGAKGDGGIPGP 1493
Query: 504 AGQVVQGLRGPHGRRGPQVQAG 525
AG + G GP G GPQ G
Sbjct: 1494 AGPL--GPPGPPGLPGPQGPKG 1513
Score = 31.2 bits (69), Expect = 3.4
Identities = 36/136 (26%), Positives = 45/136 (33%), Gaps = 31/136 (22%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
+ G E RG P PG +G +G+ G G K G P PG G G
Sbjct: 1181 QKGDEGARGFPGP----PGPIGLQGLPG----PPGEKGENGDVGPMGPPGPPGPRGPQGP 1232
Query: 450 GEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQVVQ 509
G G Q S S+ G+ PG G + G G
Sbjct: 1233 N-GADGPQGPPGSVGSV---------------GGVGEKGEPGEAGNPGPPGEAGVG---- 1272
Query: 510 GLRGPHGRRGPQVQAG 525
GP G RG + +AG
Sbjct: 1273 ---GPKGERGEKGEAG 1285
Score = 31.2 bits (69), Expect = 3.4
Identities = 51/188 (27%), Positives = 64/188 (34%), Gaps = 23/188 (12%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAGE 451
G G P P PG G +GV G + E G G P S A PG PG G
Sbjct: 1309 GPVGFPGDPGP-PGEPGPAGQDGVGGD-KGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPG 1366
Query: 452 GVKGSQRHGDSTTSLIISYALVTIMDFPI-PQGLA-------LTTHPGWHSEAG----GR 499
R G+ P+ PQG A L PG E G
Sbjct: 1367 AAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAG 1426
Query: 500 RDGGAGQV----VQGLRGPHGRRGPQVQAG-----WQAGRQAAALGRGAALRRAAQGAGS 550
+DG G + + GL+G G +G + G G Q RG + + GA
Sbjct: 1427 QDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKG 1486
Query: 551 ASGLLGGA 558
G+ G A
Sbjct: 1487 DGGIPGPA 1494
Score = 30.8 bits (68), Expect = 4.4
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGL--WEQEVGSKALRGSPAHSSPALHPGVPGSV 447
E G L G P PG G +G RGL + G+K G P + P PG PG
Sbjct: 1451 EKGHPGLIGLIGP----PGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLP 1506
Query: 448 GAGEGVKGSQ 457
G +G KG++
Sbjct: 1507 GP-QGPKGNK 1515
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 51.6 bits (122), Expect = 2e-06
Identities = 90/354 (25%), Positives = 116/354 (32%), Gaps = 76/354 (21%)
Query: 196 PGSPACGPGRRP----AGTPMPAALTPAAHVPRASTARMHCCTKRGTRLLSRSHSAASAQ 251
P PA PG+ P A PM TP P A L + + A
Sbjct: 532 PSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAP-----------LLQVPPSPPAS 580
Query: 252 PNTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLEELAELLPKRSL 311
P L + R P PGP + +AL P GPP P S
Sbjct: 581 PT----------LQAPRRPPTPGPDTSVSGPRLTLALAP-----GPP--------PPPSR 617
Query: 312 DPKSTLL-LSLSSGGSSADWIPIASERRGLEPAAEALGSAYQLLDALSNGLMPGADDGLR 370
P STL L+ SSA P E RG + E +A DA P A
Sbjct: 618 SPSSTLSGPDLAGHSSSATSTP--EELRGYDSGPEGGAAASPPPDAELAACHPAAWSR-- 673
Query: 371 VVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRG 430
A PLAF G+ P P G A+G+ ++E E G ++
Sbjct: 674 ---GPAPPLAF------------RGAPGAPLPWPPATGPGSADGLCTIYETE-GPESATP 717
Query: 431 SPAHSSPALHPGVPG---SVGAGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALT 487
+P P PG G + GAG G L + +++ + + L L
Sbjct: 718 APGALDPGPSPGTSGGKAAAGAGAGASSRSPKQARLGELPLGALQASVVQHLLSRTLLLA 777
Query: 488 THPGWHSEAGGRRDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAAL 541
G +GG GP G G V G +A A LGR A L
Sbjct: 778 AAEGAAGGSGG--------------GPGGAEGGGVTGGARAALSDAELGRWAEL 817
Score = 38.5 bits (88), Expect = 0.021
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 667 PPSPARTAPCSPALTPPPEKGPAPVACPP 695
PPSP + P SP+ TPPP+ P P+A PP
Sbjct: 482 PPSPPASPPMSPSATPPPQ-APPPLAAPP 509
Score = 37.0 bits (84), Expect = 0.062
Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 19/95 (20%)
Query: 617 PHVPPVLGAAPQQPVALIRPDGHAAPVLAGVLE------GVLHQHLHHRRREPEPGPP-- 668
P PP L P Q P A+P L+ + L HL P P PP
Sbjct: 394 PQAPPALALPPLQAP----PSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQ 449
Query: 669 ---SPARTAPCSPALTPPPEKGPA----PVACPPA 696
SP + P SP+ TPP + P+ P+ PP+
Sbjct: 450 APFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPS 484
Score = 36.6 bits (83), Expect = 0.081
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 617 PHVPPVLGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEPGPPSPARTAPC 676
P PP L A P Q L +P A P LA L P P SP+ + P
Sbjct: 499 PQAPPPLAAPPLQ---LAKPPPQAPPALA---TPPLQALPSPPASFPGQAPFSPSASLPM 552
Query: 677 SPALTPPPEKGPAPVA 692
SP TPPP+ P A
Sbjct: 553 SPLATPPPQAPPVLAA 568
Score = 36.2 bits (82), Expect = 0.11
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 20/85 (23%)
Query: 617 PHVPPVLGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEPGPPS----PAR 672
P PPVL A P+ + P A+P L RR P PGP + P
Sbjct: 560 PQAPPVLAA----PLLQVPPSPPASPTLQAP------------RRPPTPGPDTSVSGPRL 603
Query: 673 TAPCSPALTPPPEKGPAPVACPPAL 697
T +P PPP + P+ P L
Sbjct: 604 TLALAPGPPPPPSRSPSSTLSGPDL 628
Score = 35.8 bits (81), Expect = 0.14
Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 16/96 (16%)
Query: 616 TPHVPPVLGAAPQQPVALIRPDGHAAPV---------LAGVLEGVLHQHLHHRRREPEPG 666
+P + P+ PQ P AL P A P LA + H + P
Sbjct: 383 SPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSP 442
Query: 667 PPSPARTAPCSPALTP-------PPEKGPAPVACPP 695
PPSP AP SP +P PP + P +A PP
Sbjct: 443 PPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPP 478
Score = 31.6 bits (70), Expect = 2.6
Identities = 31/114 (27%), Positives = 38/114 (33%), Gaps = 42/114 (36%)
Query: 612 AAGLTPHVPPVLGAAPQQ---------PVALIRPDGHAAPVLAGVLEGVLHQHLHHRRRE 662
+A L PP L A P P+ L P A P L +
Sbjct: 310 SAALQSQAPPTLPATPHSSSLTCQLATPLPLAPPSPSAPPSLQTL-------------PS 356
Query: 663 PEPGPPSPARTA----------------PCSPALTPPPEKGPA----PVACPPA 696
P PPS A T+ P SP TPPP+ PA P+ PP+
Sbjct: 357 PPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPS 410
Score = 30.0 bits (66), Expect = 7.6
Identities = 24/80 (30%), Positives = 26/80 (32%), Gaps = 7/80 (8%)
Query: 616 TPHVPPVLGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEPGPPSPARTAP 675
+P PP L P P P A L H L P PP A A
Sbjct: 344 SPSAPPSLQTLPSPPAT---PPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPAL 400
Query: 676 CSPALTPPPEKGPAPVACPP 695
P L P P+P A PP
Sbjct: 401 ALPPLQAP----PSPPASPP 416
Score = 29.6 bits (65), Expect = 9.9
Identities = 46/189 (24%), Positives = 56/189 (29%), Gaps = 24/189 (12%)
Query: 513 GPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLGGAVG----ARGRRRAH 568
GP G++G ++ A R A A +R+A AG+ G G A RR
Sbjct: 127 GPLGQKGLRISAEETVARGKAT----EAPKRSALSAGARRDTSGPTPGTPSPAMARRSRA 182
Query: 569 KPVVVGERLRGRGARVRTWRRGGGRVAQRGQLAHVLRRQVEGAAAGLTPHVPPVLGAAPQ 628
VG AR R G R+ V A+ T P P
Sbjct: 183 AGTEVGLPRPAPSARPRPPTEGP-------------RKSVSSASEHSTTEPSPAARRRPS 229
Query: 629 QPVALIRPDGHAAPVLAGVLEGVLHQHLHHR---RREPEPGPPSPARTAPCSPALTPPPE 685
L RP + A L R R P P P P PP
Sbjct: 230 AGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPR 289
Query: 686 KGPAPVACP 694
K AP P
Sbjct: 290 KDAAPALGP 298
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapiens]
Length = 1124
Score = 51.6 bits (122), Expect = 2e-06
Identities = 90/354 (25%), Positives = 116/354 (32%), Gaps = 76/354 (21%)
Query: 196 PGSPACGPGRRP----AGTPMPAALTPAAHVPRASTARMHCCTKRGTRLLSRSHSAASAQ 251
P PA PG+ P A PM TP P A L + + A
Sbjct: 801 PSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAP-----------LLQVPPSPPAS 849
Query: 252 PNTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLEELAELLPKRSL 311
P L + R P PGP + +AL P GPP P S
Sbjct: 850 PT----------LQAPRRPPTPGPDTSVSGPRLTLALAP-----GPP--------PPPSR 886
Query: 312 DPKSTLL-LSLSSGGSSADWIPIASERRGLEPAAEALGSAYQLLDALSNGLMPGADDGLR 370
P STL L+ SSA P E RG + E +A DA P A
Sbjct: 887 SPSSTLSGPDLAGHSSSATSTP--EELRGYDSGPEGGAAASPPPDAELAACHPAAWSR-- 942
Query: 371 VVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRG 430
A PLAF G+ P P G A+G+ ++E E G ++
Sbjct: 943 ---GPAPPLAF------------RGAPGAPLPWPPATGPGSADGLCTIYETE-GPESATP 986
Query: 431 SPAHSSPALHPGVPG---SVGAGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALT 487
+P P PG G + GAG G L + +++ + + L L
Sbjct: 987 APGALDPGPSPGTSGGKAAAGAGAGASSRSPKQARLGELPLGALQASVVQHLLSRTLLLA 1046
Query: 488 THPGWHSEAGGRRDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAAL 541
G +GG GP G G V G +A A LGR A L
Sbjct: 1047 AAEGAAGGSGG--------------GPGGAEGGGVTGGARAALSDAELGRWAEL 1086
Score = 38.5 bits (88), Expect = 0.021
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 667 PPSPARTAPCSPALTPPPEKGPAPVACPP 695
PPSP + P SP+ TPPP+ P P+A PP
Sbjct: 707 PPSPPASPPMSPSATPPPQ-APPPLAAPP 734
Score = 36.6 bits (83), Expect = 0.081
Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 19/95 (20%)
Query: 617 PHVPPVLGAAPQQPVALIRPDGHAAPVLAGVLE------GVLHQHLHHRRREPEPGPP-- 668
P PP L P Q P A+P L+ + L HL P P PP
Sbjct: 619 PQAPPXLALPPLQAP----PSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQ 674
Query: 669 ---SPARTAPCSPALTPPPEKGPA----PVACPPA 696
SP + P SP+ TPP + P+ P+ PP+
Sbjct: 675 APFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPS 709
Score = 36.2 bits (82), Expect = 0.11
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 20/85 (23%)
Query: 617 PHVPPVLGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEPGPPS----PAR 672
P PPVL A P+ + P A+P L RR P PGP + P
Sbjct: 829 PQAPPVLAA----PLLQVPPSPPASPTLQAP------------RRPPTPGPDTSVSGPRL 872
Query: 673 TAPCSPALTPPPEKGPAPVACPPAL 697
T +P PPP + P+ P L
Sbjct: 873 TLALAPGPPPPPSRSPSSTLSGPDL 897
Score = 35.8 bits (81), Expect = 0.14
Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 617 PHVPPVLGAAPQQ---------PVA-LIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEPG 666
P VPP+L A P Q P++ L +P A P LA L P
Sbjct: 755 PRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAPPALA---TPPLQALPSPPASFPGQA 811
Query: 667 PPSPARTAPCSPALTPPPEKGPAPVA 692
P SP+ + P SP TPPP+ P A
Sbjct: 812 PFSPSASLPMSPLATPPPQAPPVLAA 837
Score = 33.5 bits (75), Expect = 0.68
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 20/75 (26%)
Query: 621 PVLGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEPGPPSPARTAPCSPAL 680
P+ P+ P ++ P A P LA P G PSP P SP
Sbjct: 575 PLTTPPPETPSSIATPPPQAPPALAS---------------PPLQGLPSP----PLSPLA 615
Query: 681 TPPPEKGPAPVACPP 695
TPPP+ P +A PP
Sbjct: 616 TPPPQ-APPXLALPP 629
Score = 33.5 bits (75), Expect = 0.68
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 26/89 (29%)
Query: 617 PHVPPVLGAAPQQ---------PVA-LIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEPG 666
P PP L A P Q P++ P P+LA P
Sbjct: 724 PQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAA---------------PPLQV 768
Query: 667 PPSPARTAPCSPALTPPPEKGPAPVACPP 695
PPSP + P SP PPP+ PA +A PP
Sbjct: 769 PPSPPASLPMSPLAKPPPQAPPA-LATPP 796
Score = 31.2 bits (69), Expect = 3.4
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 667 PPSPART---APCSPALTPPPEKGPAPVACPP 695
PP PA AP SP TPPPE P+ +A PP
Sbjct: 561 PPCPAPCPLQAPPSPLTTPPPET-PSSIATPP 591
Score = 29.6 bits (65), Expect = 9.9
Identities = 46/189 (24%), Positives = 56/189 (29%), Gaps = 24/189 (12%)
Query: 513 GPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLGGAVG----ARGRRRAH 568
GP G++G ++ A R A A +R+A AG+ G G A RR
Sbjct: 127 GPLGQKGLRISAEETVARGKAT----EAPKRSALSAGARRDTSGPTPGTPSPAMARRSRA 182
Query: 569 KPVVVGERLRGRGARVRTWRRGGGRVAQRGQLAHVLRRQVEGAAAGLTPHVPPVLGAAPQ 628
VG AR R G R+ V A+ T P P
Sbjct: 183 AGTEVGLPRPAPSARPRPPTEGP-------------RKSVSSASEHSTTEPSPAARRRPS 229
Query: 629 QPVALIRPDGHAAPVLAGVLEGVLHQHLHHR---RREPEPGPPSPARTAPCSPALTPPPE 685
L RP + A L R R P P P P PP
Sbjct: 230 AGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPR 289
Query: 686 KGPAPVACP 694
K AP P
Sbjct: 290 KDAAPALGP 298
Score = 29.6 bits (65), Expect = 9.9
Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 15/82 (18%)
Query: 621 PVLGAAPQQPVALIRPDG-HAAPV-----LAGVLEGVLHQHLHHRRREPEPGPPSPARTA 674
P LG P+A P G A PV A L L P P +P A
Sbjct: 294 PALGPLSSSPLATPSPSGTKARPVPPPDNAATPLPATL---------PPSPPLATPLPLA 344
Query: 675 PCSPALTPPPEKGPAPVACPPA 696
P SP+ P + P+P A PP+
Sbjct: 345 PPSPSAPPSLQTLPSPPATPPS 366
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 51.6 bits (122), Expect = 2e-06
Identities = 90/354 (25%), Positives = 116/354 (32%), Gaps = 76/354 (21%)
Query: 196 PGSPACGPGRRP----AGTPMPAALTPAAHVPRASTARMHCCTKRGTRLLSRSHSAASAQ 251
P PA PG+ P A PM TP P A L + + A
Sbjct: 493 PSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAP-----------LLQVPPSPPAS 541
Query: 252 PNTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLEELAELLPKRSL 311
P L + R P PGP + +AL P GPP P S
Sbjct: 542 PT----------LQAPRRPPTPGPDTSVSGPRLTLALAP-----GPP--------PPPSR 578
Query: 312 DPKSTLL-LSLSSGGSSADWIPIASERRGLEPAAEALGSAYQLLDALSNGLMPGADDGLR 370
P STL L+ SSA P E RG + E +A DA P A
Sbjct: 579 SPSSTLSGPDLAGHSSSATSTP--EELRGYDSGPEGGAAASPPPDAELAACHPAAWSR-- 634
Query: 371 VVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRG 430
A PLAF G+ P P G A+G+ ++E E G ++
Sbjct: 635 ---GPAPPLAF------------RGAPGAPLPWPPATGPGSADGLCTIYETE-GPESATP 678
Query: 431 SPAHSSPALHPGVPG---SVGAGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALT 487
+P P PG G + GAG G L + +++ + + L L
Sbjct: 679 APGALDPGPSPGTSGGKAAAGAGAGASSRSPKQARLGELPLGALQASVVQHLLSRTLLLA 738
Query: 488 THPGWHSEAGGRRDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAAL 541
G +GG GP G G V G +A A LGR A L
Sbjct: 739 AAEGAAGGSGG--------------GPGGAEGGGVTGGARAALSDAELGRWAEL 778
Score = 38.5 bits (88), Expect = 0.021
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 667 PPSPARTAPCSPALTPPPEKGPAPVACPP 695
PPSP + P SP+ TPPP+ P P+A PP
Sbjct: 443 PPSPPASPPMSPSATPPPQ-APPPLAAPP 470
Score = 37.0 bits (84), Expect = 0.062
Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 19/95 (20%)
Query: 617 PHVPPVLGAAPQQPVALIRPDGHAAPVLAGVLE------GVLHQHLHHRRREPEPGPP-- 668
P PP L P Q P A+P L+ + L HL P P PP
Sbjct: 355 PQAPPALALPPLQAP----PSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQ 410
Query: 669 ---SPARTAPCSPALTPPPEKGPA----PVACPPA 696
SP + P SP+ TPP + P+ P+ PP+
Sbjct: 411 APFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPS 445
Score = 36.6 bits (83), Expect = 0.081
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 617 PHVPPVLGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEPGPPSPARTAPC 676
P PP L A P Q L +P A P LA L P P SP+ + P
Sbjct: 460 PQAPPPLAAPPLQ---LAKPPPQAPPALA---TPPLQALPSPPASFPGQAPFSPSASLPM 513
Query: 677 SPALTPPPEKGPAPVA 692
SP TPPP+ P A
Sbjct: 514 SPLATPPPQAPPVLAA 529
Score = 36.2 bits (82), Expect = 0.11
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 20/85 (23%)
Query: 617 PHVPPVLGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEPGPPS----PAR 672
P PPVL A P+ + P A+P L RR P PGP + P
Sbjct: 521 PQAPPVLAA----PLLQVPPSPPASPTLQAP------------RRPPTPGPDTSVSGPRL 564
Query: 673 TAPCSPALTPPPEKGPAPVACPPAL 697
T +P PPP + P+ P L
Sbjct: 565 TLALAPGPPPPPSRSPSSTLSGPDL 589
Score = 35.8 bits (81), Expect = 0.14
Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 16/96 (16%)
Query: 616 TPHVPPVLGAAPQQPVALIRPDGHAAPV---------LAGVLEGVLHQHLHHRRREPEPG 666
+P + P+ PQ P AL P A P LA + H + P
Sbjct: 344 SPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSP 403
Query: 667 PPSPARTAPCSPALTP-------PPEKGPAPVACPP 695
PPSP AP SP +P PP + P +A PP
Sbjct: 404 PPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPP 439
Score = 33.1 bits (74), Expect = 0.89
Identities = 74/314 (23%), Positives = 111/314 (35%), Gaps = 44/314 (14%)
Query: 402 PHPLVP------GAVGAEGVRGLWEQE--VGSKALRGSPAHSSPALHPGVPGSVGAGEGV 453
P P+ P GA GA G + L E+ +G + S + P P S G GE
Sbjct: 36 PPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPRAGPTRTSRPPAS-GRGERA 94
Query: 454 KGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQVVQGLRG 513
++ S P + TT PG + G R A + V +
Sbjct: 95 PPAKNTSPGPVSS--------------PGRASGTTRPGPLGQKGLRIS--AEETVARGKA 138
Query: 514 PHGRRGPQVQAGWQAGRQAAALGRGA-ALRRAAQGAGSASGLLGGAVGARGRRRAHKPVV 572
+ + AG + G + A+ R ++ AG+ GL A AR R P
Sbjct: 139 TEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPR-----PPT 193
Query: 573 VGERLRGRGARVRTWRRGGGRVAQRGQLAHVLRRQVEGAAAGLTPHVPPVLGAAPQQPVA 632
G R A + +R L+R A+ L+ P+ A P A
Sbjct: 194 EGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRP---ASRSLSSSATPLSSPARSGPSA 250
Query: 633 LIRPDGHAAPVLAGV--LEGVLHQHLHHRRREPEP--GPPS------PARTAPCSPALTP 682
P A P L+ + + R++ P GP S P+ +AP SP+ P
Sbjct: 251 RGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAPPSPSAPP 310
Query: 683 PPEKGPAPVACPPA 696
+ P+P A PP+
Sbjct: 311 SLQTLPSPPATPPS 324
Score = 31.2 bits (69), Expect = 3.4
Identities = 33/124 (26%), Positives = 45/124 (36%), Gaps = 25/124 (20%)
Query: 194 RAPGSPACGP-GRRPAGTPMPAALTPAAHVPRA--------STARMHCCTKRGTRLLSRS 244
R +PA GP P TP P+A P+ P + +T T G+ L +
Sbjct: 280 RKDAAPALGPLSSSPLATPSPSA-PPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQAT 338
Query: 245 HSAASAQPNTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLEELAE 304
HS + P + Q P+L P+ P P AS PPL LA
Sbjct: 339 HSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPAS---------------PPLSPLAT 383
Query: 305 LLPK 308
P+
Sbjct: 384 PSPQ 387
Score = 30.8 bits (68), Expect = 4.4
Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 29/96 (30%)
Query: 621 PVLGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEPGPPSPARTA------ 674
P LG P+A P +P L+ + P PPS A T+
Sbjct: 285 PALGPLSSSPLATPSPSAPPSPSAPPSLQTL---------PSPPATPPSQATTSLGSPTL 335
Query: 675 ----------PCSPALTPPPEKGPA----PVACPPA 696
P SP TPPP+ PA P+ PP+
Sbjct: 336 QATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPS 371
Score = 30.0 bits (66), Expect = 7.6
Identities = 24/80 (30%), Positives = 26/80 (32%), Gaps = 7/80 (8%)
Query: 616 TPHVPPVLGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEPGPPSPARTAP 675
+P PP L P P P A L H L P PP A A
Sbjct: 305 SPSAPPSLQTLPSPPAT---PPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPAL 361
Query: 676 CSPALTPPPEKGPAPVACPP 695
P L P P+P A PP
Sbjct: 362 ALPPLQAP----PSPPASPP 377
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 49.7 bits (117), Expect = 9e-06
Identities = 88/338 (26%), Positives = 114/338 (33%), Gaps = 69/338 (20%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
+ G+ +G P GA+G G +G G L G P P HPG G
Sbjct: 564 QQGTPGTQGLPGPQ----GAIGPHGEKG----PQGKPGLPGMPGSDGPPGHPGKEGP--- 612
Query: 450 GEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGL-------ALTTH---------PGWH 493
G KG+Q G S + Y P P+G+ L H PG+
Sbjct: 613 -PGTKGNQ--GPSGPQGPLGY--------PGPRGVKGVDGIRGLKGHKGEKGEDGFPGFK 661
Query: 494 SEAGGRRDGG-----AGQVVQGLRGPHGRRGPQVQAG-----WQAGRQAAALGRGAALRR 543
+ G + D G + G GP GR GP G + G+ G R+
Sbjct: 662 GDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQ 721
Query: 544 AAQGAGSASGLLG--GAVGARGRRRAHKPVVVGERLRGRGARVRTWRRGGGRVAQRGQLA 601
+G+ G G G GARG P RG R T RG QRG
Sbjct: 722 GPKGSLGFPGFPGASGEKGARGLSGKSGP---------RGERGPTGPRG-----QRGPRG 767
Query: 602 HVLRRQVEGAAAGLTPHVPPVLGA--APQQPVALIRPDGHAAPVLAGVLEGVLHQ--HLH 657
+ +G + G PH PP PQ P P G P L G Q +
Sbjct: 768 ATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVG 827
Query: 658 HRRREPEPGPPSPARTAPCSPALTPPPEKG-PAPVACP 694
+ + PGPP + P E+G P P P
Sbjct: 828 FQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPP 865
Score = 48.1 bits (113), Expect = 3e-05
Identities = 58/189 (30%), Positives = 70/189 (37%), Gaps = 35/189 (18%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
+ G +G + P P PG VG +G G E G RG P P G+PG+ G
Sbjct: 822 QRGEVGFQGKTGP-PGPPGVVGPQGAAG----ETGPMGERGHPGPPGPPGEQGLPGTAGK 876
Query: 450 GEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQVVQ 509
EG KG + + FP +GL PG AGG
Sbjct: 877 -EGTKGDPGPPGAPG----KDGPAGLRGFPGERGL-----PG---TAGG----------P 913
Query: 510 GLRGPHGRRGPQVQAGWQAGRQAAALGR--GAALRRAAQGAGSASGLLG-----GAVGAR 562
GL+G G GP AG R AA G G R QG A+G G G +G
Sbjct: 914 GLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPT 973
Query: 563 GRRRAHKPV 571
GR PV
Sbjct: 974 GRDGVQGPV 982
Score = 44.3 bits (103), Expect = 4e-04
Identities = 81/305 (26%), Positives = 105/305 (34%), Gaps = 76/305 (24%)
Query: 386 LWEQEAGSEALRGSSA------PHPLVPGAVGAEGVRGLWEQEVGSKALRGSPA------ 433
L E G L+G P LV G G EG GL +G ++G+P
Sbjct: 285 LEEAAHGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGL----IGPPGIQGNPGPVGDPG 340
Query: 434 HSSPALHPGVPGSVGA----------------GEGVKGSQRHG-DSTTSLIISYALVTIM 476
P G+PGS GA G G KG ++ I+ A + +
Sbjct: 341 ERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALR 400
Query: 477 DFPIPQGLALTTHPGWHSEAG--GRRDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAA 534
P P G T PG + G G + QG RGP G GP +AG
Sbjct: 401 GPPGPMGY--TGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAG--------- 449
Query: 535 LGRGAALRRAAQGAGSASGLLG--GAVGARGRRRAHKPVVVGERLRGRGARVRTWRRG-- 590
RR GA A G+ G G G RG P + GE +G R T +G
Sbjct: 450 -------RRGRAGADGARGMPGDPGVKGDRGFDGL--PGLPGE----KGHRGDTGAQGLP 496
Query: 591 --GGRVAQRGQLAHVLRRQVEGAAAG---LTPHVPPVLGA--------APQQPVALIRPD 637
G +RG + R + G + L P PP + PQ P + P
Sbjct: 497 GPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQ 556
Query: 638 GHAAP 642
G P
Sbjct: 557 GEPGP 561
Score = 38.9 bits (89), Expect = 0.016
Identities = 55/194 (28%), Positives = 67/194 (34%), Gaps = 43/194 (22%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA-- 449
G L G + P PG G +G +G EVG +G+ + PG PG +G
Sbjct: 980 GPVGLPGPAGP----PGVAGEDGDKG----EVGDPGQKGTKGNKGEHGPPGPPGPIGPVG 1031
Query: 450 --------GE-GVKGSQRH----GDSTTSLIISYALVTIMDFPIPQG-LALTTHPGWHSE 495
GE G +G Q H GD T F P G + L PG E
Sbjct: 1032 QPGAAGADGEPGARGPQGHFGAKGDEGT-----------RGFNGPPGPIGLQGLPGPSGE 1080
Query: 496 AGGRRDGGAGQVVQGLRGPHGRRGPQVQAGWQA--GRQAAALGRGAALRRAAQGAGSASG 553
G D G G GP G RGP G G G + G + G
Sbjct: 1081 KGETGDVGP----MGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPG 1136
Query: 554 LLG--GAVGARGRR 565
+ G G G RG R
Sbjct: 1137 IQGEPGVKGPRGER 1150
Score = 35.8 bits (81), Expect = 0.14
Identities = 49/166 (29%), Positives = 60/166 (36%), Gaps = 38/166 (22%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVG-----AGEGVKGSQRHGD 461
PG G+ G++G E G K RG + PG PG G +G KG+
Sbjct: 1129 PGESGSPGIQG----EPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGP-- 1182
Query: 462 STTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRR--DGGAGQV-------VQGLR 512
+ FP G P A G R DG GQ G
Sbjct: 1183 --------------VGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPP 1228
Query: 513 GPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLGGA 558
GP G+RGP G GRQ G+GA A GA +G +G A
Sbjct: 1229 GPLGKRGPAGSPG-SEGRQG---GKGAKGDPGAIGAPGKTGPVGPA 1270
Score = 35.4 bits (80), Expect = 0.18
Identities = 41/137 (29%), Positives = 52/137 (37%), Gaps = 28/137 (20%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSS---PALHPGVPGSVG 448
G + RG + L PG G +G RG + E+G + L G P PG+PG G
Sbjct: 482 GEKGHRGDTGAQGL-PGPPGEDGERGD-DGEIGPRGLPGESGPRGLLGPKGPPGIPGPPG 539
Query: 449 AGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQVV 508
G+ G Q S PQG PG + G G
Sbjct: 540 V-RGMDGPQGPKGSLG----------------PQG-----EPGPPGQQGTPGTQGLPGP- 576
Query: 509 QGLRGPHGRRGPQVQAG 525
QG GPHG +GPQ + G
Sbjct: 577 QGAIGPHGEKGPQGKPG 593
Score = 33.1 bits (74), Expect = 0.89
Identities = 36/134 (26%), Positives = 46/134 (34%), Gaps = 31/134 (23%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAGE 451
G E RG + P PG +G +G+ G G K G P PG G G
Sbjct: 1055 GDEGTRGFNGP----PGPIGLQGLPG----PSGEKGETGDVGPMGPPGPPGPRGPAGPN- 1105
Query: 452 GVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQVVQGL 511
G G Q P G+ PG E G G Q G+
Sbjct: 1106 GADGPQGP---------------------PGGVGNLGPPGEKGEPGESGSPGI-QGEPGV 1143
Query: 512 RGPHGRRGPQVQAG 525
+GP G RG + ++G
Sbjct: 1144 KGPRGERGEKGESG 1157
Score = 30.4 bits (67), Expect = 5.8
Identities = 48/178 (26%), Positives = 62/178 (34%), Gaps = 49/178 (27%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQE--------VGSKALRGSPAHSSPALHPGV 443
G + LRG +PG+VG +G G Q G LRG HPG+
Sbjct: 1277 GPDGLRG-------LPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGL 1329
Query: 444 PGSVG--AGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRD 501
G +G +G KG + P PQG PG E G
Sbjct: 1330 IGLIGPPGEQGEKGDR-------------------GLPGPQG-----SPGQKGEMG--IP 1363
Query: 502 GGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLGGAV 559
G +G + G GP G GP AG + + A G G + QG G G +
Sbjct: 1364 GASGPIGPG--GPPGLPGP---AGPKGAKGATGPG-GPKGEKGVQGPPGHPGPPGEVI 1415
Score = 30.4 bits (67), Expect = 5.8
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 390 EAGSEALRGSSAP-----HPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVP 444
+ G + G+S P P +PG G +G +G G +G P HPG P
Sbjct: 1356 QKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGA----TGPGGPKGEKGVQGPPGHPGPP 1411
Query: 445 GSV 447
G V
Sbjct: 1412 GEV 1414
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 49.7 bits (117), Expect = 9e-06
Identities = 88/338 (26%), Positives = 114/338 (33%), Gaps = 69/338 (20%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
+ G+ +G P GA+G G +G G L G P P HPG G
Sbjct: 543 QQGTPGTQGLPGPQ----GAIGPHGEKG----PQGKPGLPGMPGSDGPPGHPGKEGP--- 591
Query: 450 GEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGL-------ALTTH---------PGWH 493
G KG+Q G S + Y P P+G+ L H PG+
Sbjct: 592 -PGTKGNQ--GPSGPQGPLGY--------PGPRGVKGVDGIRGLKGHKGEKGEDGFPGFK 640
Query: 494 SEAGGRRDGG-----AGQVVQGLRGPHGRRGPQVQAG-----WQAGRQAAALGRGAALRR 543
+ G + D G + G GP GR GP G + G+ G R+
Sbjct: 641 GDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQ 700
Query: 544 AAQGAGSASGLLG--GAVGARGRRRAHKPVVVGERLRGRGARVRTWRRGGGRVAQRGQLA 601
+G+ G G G GARG P RG R T RG QRG
Sbjct: 701 GPKGSLGFPGFPGASGEKGARGLSGKSGP---------RGERGPTGPRG-----QRGPRG 746
Query: 602 HVLRRQVEGAAAGLTPHVPPVLGA--APQQPVALIRPDGHAAPVLAGVLEGVLHQ--HLH 657
+ +G + G PH PP PQ P P G P L G Q +
Sbjct: 747 ATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVG 806
Query: 658 HRRREPEPGPPSPARTAPCSPALTPPPEKG-PAPVACP 694
+ + PGPP + P E+G P P P
Sbjct: 807 FQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPP 844
Score = 48.1 bits (113), Expect = 3e-05
Identities = 58/189 (30%), Positives = 70/189 (37%), Gaps = 35/189 (18%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
+ G +G + P P PG VG +G G E G RG P P G+PG+ G
Sbjct: 801 QRGEVGFQGKTGP-PGPPGVVGPQGAAG----ETGPMGERGHPGPPGPPGEQGLPGTAGK 855
Query: 450 GEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQVVQ 509
EG KG + + FP +GL PG AGG
Sbjct: 856 -EGTKGDPGPPGAPG----KDGPAGLRGFPGERGL-----PG---TAGG----------P 892
Query: 510 GLRGPHGRRGPQVQAGWQAGRQAAALGR--GAALRRAAQGAGSASGLLG-----GAVGAR 562
GL+G G GP AG R AA G G R QG A+G G G +G
Sbjct: 893 GLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPT 952
Query: 563 GRRRAHKPV 571
GR PV
Sbjct: 953 GRDGVQGPV 961
Score = 43.5 bits (101), Expect = 7e-04
Identities = 76/283 (26%), Positives = 99/283 (34%), Gaps = 70/283 (24%)
Query: 402 PHPLVPGAVGAEGVRGLWEQEVGSKALRGSPA------HSSPALHPGVPGSVGA------ 449
P LV G G EG GL +G ++G+P P G+PGS GA
Sbjct: 286 PGMLVEGPPGPEGPAGL----IGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGT 341
Query: 450 ----------GEGVKGSQRHG-DSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAG- 497
G G KG ++ I+ A + + P P G T PG + G
Sbjct: 342 SLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGY--TGRPGPLGQPGS 399
Query: 498 -GRRDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG 556
G + QG RGP G GP +AG RR GA A G+ G
Sbjct: 400 PGLKGESGDLGPQGPRGPQGLTGPPGKAG----------------RRGRAGADGARGMPG 443
Query: 557 --GAVGARGRRRAHKPVVVGERLRGRGARVRTWRRG----GGRVAQRGQLAHVLRRQVEG 610
G G RG P + GE +G R T +G G +RG + R + G
Sbjct: 444 DPGVKGDRGFDGL--PGLPGE----KGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPG 497
Query: 611 AAAG---LTPHVPPVLGA--------APQQPVALIRPDGHAAP 642
+ L P PP + PQ P + P G P
Sbjct: 498 ESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGP 540
Score = 38.9 bits (89), Expect = 0.016
Identities = 55/194 (28%), Positives = 67/194 (34%), Gaps = 43/194 (22%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA-- 449
G L G + P PG G +G +G EVG +G+ + PG PG +G
Sbjct: 959 GPVGLPGPAGP----PGVAGEDGDKG----EVGDPGQKGTKGNKGEHGPPGPPGPIGPVG 1010
Query: 450 --------GE-GVKGSQRH----GDSTTSLIISYALVTIMDFPIPQG-LALTTHPGWHSE 495
GE G +G Q H GD T F P G + L PG E
Sbjct: 1011 QPGAAGADGEPGARGPQGHFGAKGDEGT-----------RGFNGPPGPIGLQGLPGPSGE 1059
Query: 496 AGGRRDGGAGQVVQGLRGPHGRRGPQVQAGWQA--GRQAAALGRGAALRRAAQGAGSASG 553
G D G G GP G RGP G G G + G + G
Sbjct: 1060 KGETGDVGP----MGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPG 1115
Query: 554 LLG--GAVGARGRR 565
+ G G G RG R
Sbjct: 1116 IQGEPGVKGPRGER 1129
Score = 35.8 bits (81), Expect = 0.14
Identities = 49/166 (29%), Positives = 60/166 (36%), Gaps = 38/166 (22%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVG-----AGEGVKGSQRHGD 461
PG G+ G++G E G K RG + PG PG G +G KG+
Sbjct: 1108 PGESGSPGIQG----EPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGP-- 1161
Query: 462 STTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRR--DGGAGQV-------VQGLR 512
+ FP G P A G R DG GQ G
Sbjct: 1162 --------------VGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPP 1207
Query: 513 GPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLGGA 558
GP G+RGP G GRQ G+GA A GA +G +G A
Sbjct: 1208 GPLGKRGPAGSPG-SEGRQG---GKGAKGDPGAIGAPGKTGPVGPA 1249
Score = 35.4 bits (80), Expect = 0.18
Identities = 41/137 (29%), Positives = 52/137 (37%), Gaps = 28/137 (20%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSS---PALHPGVPGSVG 448
G + RG + L PG G +G RG + E+G + L G P PG+PG G
Sbjct: 461 GEKGHRGDTGAQGL-PGPPGEDGERGD-DGEIGPRGLPGESGPRGLLGPKGPPGIPGPPG 518
Query: 449 AGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQVV 508
G+ G Q S PQG PG + G G
Sbjct: 519 V-RGMDGPQGPKGSLG----------------PQG-----EPGPPGQQGTPGTQGLPGP- 555
Query: 509 QGLRGPHGRRGPQVQAG 525
QG GPHG +GPQ + G
Sbjct: 556 QGAIGPHGEKGPQGKPG 572
Score = 33.1 bits (74), Expect = 0.89
Identities = 36/134 (26%), Positives = 46/134 (34%), Gaps = 31/134 (23%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAGE 451
G E RG + P PG +G +G+ G G K G P PG G G
Sbjct: 1034 GDEGTRGFNGP----PGPIGLQGLPG----PSGEKGETGDVGPMGPPGPPGPRGPAGPN- 1084
Query: 452 GVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQVVQGL 511
G G Q P G+ PG E G G Q G+
Sbjct: 1085 GADGPQGP---------------------PGGVGNLGPPGEKGEPGESGSPGI-QGEPGV 1122
Query: 512 RGPHGRRGPQVQAG 525
+GP G RG + ++G
Sbjct: 1123 KGPRGERGEKGESG 1136
Score = 30.4 bits (67), Expect = 5.8
Identities = 48/178 (26%), Positives = 62/178 (34%), Gaps = 49/178 (27%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQE--------VGSKALRGSPAHSSPALHPGV 443
G + LRG +PG+VG +G G Q G LRG HPG+
Sbjct: 1256 GPDGLRG-------LPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGL 1308
Query: 444 PGSVG--AGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRD 501
G +G +G KG + P PQG PG E G
Sbjct: 1309 IGLIGPPGEQGEKGDR-------------------GLPGPQG-----SPGQKGEMG--IP 1342
Query: 502 GGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLGGAV 559
G +G + G GP G GP AG + + A G G + QG G G +
Sbjct: 1343 GASGPIGPG--GPPGLPGP---AGPKGAKGATGPG-GPKGEKGVQGPPGHPGPPGEVI 1394
Score = 30.4 bits (67), Expect = 5.8
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 390 EAGSEALRGSSAP-----HPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVP 444
+ G + G+S P P +PG G +G +G G +G P HPG P
Sbjct: 1335 QKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGA----TGPGGPKGEKGVQGPPGHPGPP 1390
Query: 445 GSV 447
G V
Sbjct: 1391 GEV 1393
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 49.7 bits (117), Expect = 9e-06
Identities = 88/338 (26%), Positives = 114/338 (33%), Gaps = 69/338 (20%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
+ G+ +G P GA+G G +G G L G P P HPG G
Sbjct: 650 QQGTPGTQGLPGPQ----GAIGPHGEKG----PQGKPGLPGMPGSDGPPGHPGKEGP--- 698
Query: 450 GEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGL-------ALTTH---------PGWH 493
G KG+Q G S + Y P P+G+ L H PG+
Sbjct: 699 -PGTKGNQ--GPSGPQGPLGY--------PGPRGVKGVDGIRGLKGHKGEKGEDGFPGFK 747
Query: 494 SEAGGRRDGG-----AGQVVQGLRGPHGRRGPQVQAG-----WQAGRQAAALGRGAALRR 543
+ G + D G + G GP GR GP G + G+ G R+
Sbjct: 748 GDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQ 807
Query: 544 AAQGAGSASGLLG--GAVGARGRRRAHKPVVVGERLRGRGARVRTWRRGGGRVAQRGQLA 601
+G+ G G G GARG P RG R T RG QRG
Sbjct: 808 GPKGSLGFPGFPGASGEKGARGLSGKSGP---------RGERGPTGPRG-----QRGPRG 853
Query: 602 HVLRRQVEGAAAGLTPHVPPVLGA--APQQPVALIRPDGHAAPVLAGVLEGVLHQ--HLH 657
+ +G + G PH PP PQ P P G P L G Q +
Sbjct: 854 ATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVG 913
Query: 658 HRRREPEPGPPSPARTAPCSPALTPPPEKG-PAPVACP 694
+ + PGPP + P E+G P P P
Sbjct: 914 FQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPP 951
Score = 48.1 bits (113), Expect = 3e-05
Identities = 58/189 (30%), Positives = 70/189 (37%), Gaps = 35/189 (18%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
+ G +G + P P PG VG +G G E G RG P P G+PG+ G
Sbjct: 908 QRGEVGFQGKTGP-PGPPGVVGPQGAAG----ETGPMGERGHPGPPGPPGEQGLPGTAGK 962
Query: 450 GEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQVVQ 509
EG KG + + FP +GL PG AGG
Sbjct: 963 -EGTKGDPGPPGAPG----KDGPAGLRGFPGERGL-----PG---TAGG----------P 999
Query: 510 GLRGPHGRRGPQVQAGWQAGRQAAALGR--GAALRRAAQGAGSASGLLG-----GAVGAR 562
GL+G G GP AG R AA G G R QG A+G G G +G
Sbjct: 1000 GLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPT 1059
Query: 563 GRRRAHKPV 571
GR PV
Sbjct: 1060 GRDGVQGPV 1068
Score = 43.5 bits (101), Expect = 7e-04
Identities = 76/283 (26%), Positives = 99/283 (34%), Gaps = 70/283 (24%)
Query: 402 PHPLVPGAVGAEGVRGLWEQEVGSKALRGSPA------HSSPALHPGVPGSVGA------ 449
P LV G G EG GL +G ++G+P P G+PGS GA
Sbjct: 393 PGMLVEGPPGPEGPAGL----IGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGT 448
Query: 450 ----------GEGVKGSQRHG-DSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAG- 497
G G KG ++ I+ A + + P P G T PG + G
Sbjct: 449 SLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGY--TGRPGPLGQPGS 506
Query: 498 -GRRDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG 556
G + QG RGP G GP +AG RR GA A G+ G
Sbjct: 507 PGLKGESGDLGPQGPRGPQGLTGPPGKAG----------------RRGRAGADGARGMPG 550
Query: 557 --GAVGARGRRRAHKPVVVGERLRGRGARVRTWRRG----GGRVAQRGQLAHVLRRQVEG 610
G G RG P + GE +G R T +G G +RG + R + G
Sbjct: 551 DPGVKGDRGFDGL--PGLPGE----KGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPG 604
Query: 611 AAAG---LTPHVPPVLGA--------APQQPVALIRPDGHAAP 642
+ L P PP + PQ P + P G P
Sbjct: 605 ESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGP 647
Score = 38.9 bits (89), Expect = 0.016
Identities = 55/194 (28%), Positives = 67/194 (34%), Gaps = 43/194 (22%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA-- 449
G L G + P PG G +G +G EVG +G+ + PG PG +G
Sbjct: 1066 GPVGLPGPAGP----PGVAGEDGDKG----EVGDPGQKGTKGNKGEHGPPGPPGPIGPVG 1117
Query: 450 --------GE-GVKGSQRH----GDSTTSLIISYALVTIMDFPIPQG-LALTTHPGWHSE 495
GE G +G Q H GD T F P G + L PG E
Sbjct: 1118 QPGAAGADGEPGARGPQGHFGAKGDEGT-----------RGFNGPPGPIGLQGLPGPSGE 1166
Query: 496 AGGRRDGGAGQVVQGLRGPHGRRGPQVQAGWQA--GRQAAALGRGAALRRAAQGAGSASG 553
G D G G GP G RGP G G G + G + G
Sbjct: 1167 KGETGDVGP----MGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPG 1222
Query: 554 LLG--GAVGARGRR 565
+ G G G RG R
Sbjct: 1223 IQGEPGVKGPRGER 1236
Score = 35.8 bits (81), Expect = 0.14
Identities = 49/166 (29%), Positives = 60/166 (36%), Gaps = 38/166 (22%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVG-----AGEGVKGSQRHGD 461
PG G+ G++G E G K RG + PG PG G +G KG+
Sbjct: 1215 PGESGSPGIQG----EPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGP-- 1268
Query: 462 STTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRR--DGGAGQV-------VQGLR 512
+ FP G P A G R DG GQ G
Sbjct: 1269 --------------VGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPP 1314
Query: 513 GPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLGGA 558
GP G+RGP G GRQ G+GA A GA +G +G A
Sbjct: 1315 GPLGKRGPAGSPG-SEGRQG---GKGAKGDPGAIGAPGKTGPVGPA 1356
Score = 35.4 bits (80), Expect = 0.18
Identities = 41/137 (29%), Positives = 52/137 (37%), Gaps = 28/137 (20%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSS---PALHPGVPGSVG 448
G + RG + L PG G +G RG + E+G + L G P PG+PG G
Sbjct: 568 GEKGHRGDTGAQGL-PGPPGEDGERGD-DGEIGPRGLPGESGPRGLLGPKGPPGIPGPPG 625
Query: 449 AGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQVV 508
G+ G Q S PQG PG + G G
Sbjct: 626 V-RGMDGPQGPKGSLG----------------PQG-----EPGPPGQQGTPGTQGLPGP- 662
Query: 509 QGLRGPHGRRGPQVQAG 525
QG GPHG +GPQ + G
Sbjct: 663 QGAIGPHGEKGPQGKPG 679
Score = 33.1 bits (74), Expect = 0.89
Identities = 36/134 (26%), Positives = 46/134 (34%), Gaps = 31/134 (23%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAGE 451
G E RG + P PG +G +G+ G G K G P PG G G
Sbjct: 1141 GDEGTRGFNGP----PGPIGLQGLPG----PSGEKGETGDVGPMGPPGPPGPRGPAGPN- 1191
Query: 452 GVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQVVQGL 511
G G Q P G+ PG E G G Q G+
Sbjct: 1192 GADGPQGP---------------------PGGVGNLGPPGEKGEPGESGSPGI-QGEPGV 1229
Query: 512 RGPHGRRGPQVQAG 525
+GP G RG + ++G
Sbjct: 1230 KGPRGERGEKGESG 1243
Score = 30.4 bits (67), Expect = 5.8
Identities = 48/178 (26%), Positives = 62/178 (34%), Gaps = 49/178 (27%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQE--------VGSKALRGSPAHSSPALHPGV 443
G + LRG +PG+VG +G G Q G LRG HPG+
Sbjct: 1363 GPDGLRG-------LPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGL 1415
Query: 444 PGSVG--AGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRD 501
G +G +G KG + P PQG PG E G
Sbjct: 1416 IGLIGPPGEQGEKGDR-------------------GLPGPQG-----SPGQKGEMG--IP 1449
Query: 502 GGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLGGAV 559
G +G + G GP G GP AG + + A G G + QG G G +
Sbjct: 1450 GASGPIGPG--GPPGLPGP---AGPKGAKGATGPG-GPKGEKGVQGPPGHPGPPGEVI 1501
Score = 30.4 bits (67), Expect = 5.8
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 390 EAGSEALRGSSAP-----HPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVP 444
+ G + G+S P P +PG G +G +G G +G P HPG P
Sbjct: 1442 QKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGA----TGPGGPKGEKGVQGPPGHPGPP 1497
Query: 445 GSV 447
G V
Sbjct: 1498 GEV 1500
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 49.7 bits (117), Expect = 9e-06
Identities = 56/164 (34%), Positives = 66/164 (40%), Gaps = 20/164 (12%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAGEGVKGSQRHGDSTTSL 466
PG G EGV+GL G +G P H P PG GS GA EG KG Q +
Sbjct: 1363 PGYPGQEGVQGLR----GKPGQQGQPGHPGPRGWPGPKGSKGA-EGPKGKQGKAGAPG-- 1415
Query: 467 IISYALVTIMDFPIPQGLALTTHPGWHSEAG----GRRDGGAGQVVQGLRGPHGRRGPQV 522
+ + P P+G + G AG RDG AGQ QG +G G GP
Sbjct: 1416 --RRGVQGLQGLPGPRG--VVGRQGLEGIAGPDGLPGRDGQAGQ--QGEQGDDGDPGPMG 1469
Query: 523 QAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG--GAVGARGR 564
AG + A L GA +G G LG G G GR
Sbjct: 1470 PAGKRGNPGVAGL-PGAQGPPGFKGESGLPGQLGPPGKRGTEGR 1512
Score = 38.1 bits (87), Expect = 0.028
Identities = 47/174 (27%), Positives = 62/174 (35%), Gaps = 37/174 (21%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAGE 451
G + ++G P PG VG +G G VG + G PGVPG
Sbjct: 973 GLDGVKGEPGD-PGRPGPVGEQGFMGFIGL-VGEPGIVGEKGDRGMMGPPGVPGP----- 1025
Query: 452 GVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQVVQGL 511
KGS H +P G+ PG G R G+
Sbjct: 1026 --KGSMGHPG------------------MPGGMGTPGEPGPQGPPGSRGP-------PGM 1058
Query: 512 RGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG--GAVGARG 563
RG GRRGP+ G AG Q + +G + G G+ G G +G+RG
Sbjct: 1059 RGAKGRRGPRGPDG-PAGEQGSRGLKGPPGPQGRPGRPGQQGVAGERGHLGSRG 1111
Score = 38.1 bits (87), Expect = 0.028
Identities = 77/296 (26%), Positives = 100/296 (33%), Gaps = 43/296 (14%)
Query: 390 EAGSEALRGSSAPH--PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSV 447
E GS L+G P P PG G G RG +GS+ G P S P G+PG
Sbjct: 1076 EQGSRGLKGPPGPQGRPGRPGQQGVAGERG----HLGSRGFPGIPGPSGPPGTKGLPGEP 1131
Query: 448 GAGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRD----GG 503
G +G +G M P G PG EAG + D G
Sbjct: 1132 GP-QGPQGPIGPPGE-------------MGPKGPPG--AVGEPGLPGEAGMKGDLGPLGT 1175
Query: 504 AGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG------- 556
G+ QGL G G G + +G G RG G GL+G
Sbjct: 1176 PGE--QGLIGQRGEPGLEGDSG-PMGPDGLKGDRGDPGPDGEHGEKGQEGLMGEDGPPGP 1232
Query: 557 -GAVGARGRRRAHKPVVVGERLRGRGARVRTWRRGGGRVAQRGQLAHVLRRQVEGAAAGL 615
G G RG K GE+ R + ++ G + G +G+ L
Sbjct: 1233 PGVTGVRGPE--GKSGKQGEKGRTGAKGAKGYQGQLGEMGVPGDPGPPGTPGPKGSRGSL 1290
Query: 616 TPHVPPVLGAAPQQPVALIRPDGH---AAPVLAGVLEGVLHQHLHHRRREPEPGPP 668
P P A +P L DGH P+ +G + + E PGPP
Sbjct: 1291 GPTGAPGRMGAQGEP-GLAGYDGHKGIVGPLGPPGPKGEKGEQGEDGKAEGPPGPP 1345
Score = 37.4 bits (85), Expect = 0.047
Identities = 45/154 (29%), Positives = 58/154 (37%), Gaps = 25/154 (16%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGV-------- 443
G L G P PG G EG GL + G +G P S PG+
Sbjct: 1493 GESGLPGQLGP----PGKRGTEGRTGLPGNQ-GEPGSKGQPGDSGEMGFPGMAGLFGPKG 1547
Query: 444 -PGSVGAGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDG 502
PG +G +G++G + L+ +V + P GL PG + G R D
Sbjct: 1548 PPGDIGF-KGIQGPR----GPPGLMGKEGIVGPLGILGPSGL-----PGPKGDKGSRGDW 1597
Query: 503 GAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALG 536
G Q +G GP GR GP G Q LG
Sbjct: 1598 GL-QGPRGPPGPRGRPGPPGPPGGPIQLQQDDLG 1630
Score = 35.4 bits (80), Expect = 0.18
Identities = 37/135 (27%), Positives = 47/135 (34%), Gaps = 33/135 (24%)
Query: 404 PLVPGAVGAEGVRGLWEQE-----VGSKALRGSPAHSSPALHPGVPGSVG-----AGEGV 453
P +PGA G G G + G+K +G P S H G G +G G
Sbjct: 645 PGIPGARGPRGPPGPYGNPGLPGPPGAKGQKGDPGLSPGKAHDGAKGDMGLPGLSGNPGP 704
Query: 454 KGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQVV--QGL 511
G + H +P P G HPG + G GA QGL
Sbjct: 705 PGRKGH----------------KGYPGPAG-----HPGEQGQPGPEGSPGAKGYPGRQGL 743
Query: 512 RGPHGRRGPQVQAGW 526
GP G GP+ G+
Sbjct: 744 PGPVGDPGPKGSRGY 758
Score = 32.7 bits (73), Expect = 1.2
Identities = 56/201 (27%), Positives = 73/201 (36%), Gaps = 33/201 (16%)
Query: 404 PLVPGAVGAEGVRGL--WEQEVGSKALRGS---PAHSSPALHPGVPGSVG--AGEGVKGS 456
P VPG +G GV G + G K L GS P GVPG G +G KGS
Sbjct: 816 PGVPGLIGDLGVLGPIGYPGPKGMKGLMGSVGEPGLKGDKGEQGVPGVSGDPGFQGDKGS 875
Query: 457 Q--------RHGDSTTSLIISYALVTIMDFPIPQGLALTTHP-GWHSEAGGRRDGGAGQV 507
Q R + + P P+G P G + G + GA
Sbjct: 876 QGLPGFPGARGKPGPLGKVGDKGSIGFPGPPGPEGFPGDIGPPGDNGPEGMKGKPGA--- 932
Query: 508 VQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG--------GAV 559
+GL GP G+ GP+ G A L G R+ G G+ G G V
Sbjct: 933 -RGLPGPRGQLGPEGDEGPMGPPGAPGL-EGQPGRKGFPGRPGLDGVKGEPGDPGRPGPV 990
Query: 560 GARGRR----RAHKPVVVGER 576
G +G +P +VGE+
Sbjct: 991 GEQGFMGFIGLVGEPGIVGEK 1011
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 49.7 bits (117), Expect = 9e-06
Identities = 54/171 (31%), Positives = 68/171 (39%), Gaps = 30/171 (17%)
Query: 397 RGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAGEGVKGS 456
+G++ P P + G G G G+ + G GSP H A PG PG+ G G G +G
Sbjct: 297 KGATGP-PGINGKDGTPGTPGM-KGSAGQAGQPGSPGHQGLAGVPGQPGTKG-GPGDQGE 353
Query: 457 QRHGDSTTSLIISYALVTIMDFPIPQGL-ALTTHPGWHSEAGGRRDGGAGQVVQGLRGPH 515
P PQGL + PG E G R + G Q + G +G
Sbjct: 354 ----------------------PGPQGLPGFSGPPGKEGEPGPRGEIGP-QGIMGQKGDQ 390
Query: 516 GRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG--GAVGARGR 564
G RGP Q G Q GRQ +G QG G G G G RG+
Sbjct: 391 GERGPVGQPGPQ-GRQGPKGEQGPPGIPGPQGLPGVKGDKGSPGKTGPRGK 440
Score = 37.4 bits (85), Expect = 0.047
Identities = 44/168 (26%), Positives = 63/168 (37%), Gaps = 18/168 (10%)
Query: 367 DGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSK 426
DGL + P+ ++ G L G P PG G G+ G E+G +
Sbjct: 83 DGLTGAKGEPGPMGIPGVKGQPGLPGPPGLPGPGFAGP--PGPPGPVGLPG----EIGIR 136
Query: 427 ALRGSPAHSSPALHPGVPGSVGAGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGL-- 484
+G P P+ PG PG G ++G + D L + + P QG+
Sbjct: 137 GPKGDPGPDGPSGPPGPPGKPGRPGTIQGLEGSAD---FLCPTNCPPGMKGPPGLQGVKG 193
Query: 485 -----ALTTHPGWHSEAGGRRDGGAG--QVVQGLRGPHGRRGPQVQAG 525
+ PG + G + D GA Q + G GP G RG AG
Sbjct: 194 HAGKRGILGDPGHQGKPGPKGDVGASGEQGIPGPPGPQGIRGYPGMAG 241
Score = 35.8 bits (81), Expect = 0.14
Identities = 59/187 (31%), Positives = 74/187 (39%), Gaps = 48/187 (25%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAGE 451
G + +G P P +PG G GV+G +GSP + P G PG G
Sbjct: 403 GRQGPKGEQGP-PGIPGPQGLPGVKGD----------KGSPGKTGPRGKVGDPGVAGL-P 450
Query: 452 GVKGSQRHGDSTTSLIISYALVTIMDFPIPQG-LALTTHPGWHSEAGGRRDGGAGQVVQG 510
G KG + G+S P P+G + PG+ +G D GA VQG
Sbjct: 451 GEKGEK--GESGE--------------PGPKGQQGVRGEPGYPGPSG---DAGA-PGVQG 490
Query: 511 LRGPHGRRGPQVQAG--WQAGRQAAALGRGA--------ALR----RAAQGAGSASGLLG 556
GP G RG G Q GRQ GR A AL+ + A+ A SA
Sbjct: 491 YPGPPGPRGLAGNRGVPGQPGRQGVE-GRDATDQHIVDVALKMLQEQLAEVAVSAKREAL 549
Query: 557 GAVGARG 563
GAVG G
Sbjct: 550 GAVGMMG 556
Score = 35.0 bits (79), Expect = 0.24
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 403 HPLVPGAVGAEGVRGLWEQEVGSK-ALRGSPAHSSPALHPGVPGSVG 448
HP +PG G G+ G Q + K RGSP A PG+PG VG
Sbjct: 613 HPGMPGPPGIPGLPGRPGQAINGKDGDRGSPGAPGEAGRPGLPGPVG 659
Score = 33.1 bits (74), Expect = 0.89
Identities = 50/190 (26%), Positives = 70/190 (36%), Gaps = 27/190 (14%)
Query: 394 EALRGSS---APHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAG 450
+ L GS+ P PG G G++G+ + G + + G P H PG G VGA
Sbjct: 164 QGLEGSADFLCPTNCPPGMKGPPGLQGV-KGHAGKRGILGDPGHQGK---PGPKGDVGAS 219
Query: 451 EGVKGSQRHGDSTTSLIISY-ALVTIMDFPIPQG-------LALTTHPGWHSEAG--GRR 500
G +G G I Y + P G + T PG G GR
Sbjct: 220 -GEQGIP--GPPGPQGIRGYPGMAGPKGETGPHGYKGMVGAIGATGPPGEEGPRGPPGRA 276
Query: 501 DGGAGQVVQGLRGPHGRRGPQVQAG-----WQAGRQAAALGRGAALRRAAQGAGSASGLL 555
+ G+RGP G GP+ G + G +G+A + G+ GL
Sbjct: 277 GEKGDEGSPGIRGPQGITGPKGATGPPGINGKDGTPGTPGMKGSAGQAGQPGSPGHQGLA 336
Query: 556 G--GAVGARG 563
G G G +G
Sbjct: 337 GVPGQPGTKG 346
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 48.1 bits (113), Expect = 3e-05
Identities = 56/186 (30%), Positives = 66/186 (35%), Gaps = 29/186 (15%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAGE 451
G RG P PG GA G G +GS+ G P PGV G+VG
Sbjct: 583 GPAGPRGERGP----PGESGAAGPTG----PIGSRGPSGPPGPDGNKGEPGVVGAVGTAG 634
Query: 452 GVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGG-RRDGGAGQV-VQ 509
S G+ + IP G PG E G RDG G
Sbjct: 635 PSGPSGLPGERGAA-------------GIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAV 681
Query: 510 GLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG-----GAVGARGR 564
G GP G G + +AG AG A RG+ R G +G G G GA+G
Sbjct: 682 GAPGPAGATGDRGEAG-AAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGE 740
Query: 565 RRAHKP 570
R A P
Sbjct: 741 RGAKGP 746
Score = 42.0 bits (97), Expect = 0.002
Identities = 55/187 (29%), Positives = 73/187 (39%), Gaps = 25/187 (13%)
Query: 391 AGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAG 450
AG G+ P + GAVG G G G + G P S P PG PG+ G
Sbjct: 252 AGPPGFPGAPGPKGEI-GAVGNAGPAG----PAGPRGEVGLPGLSGPVGPPGNPGANGL- 305
Query: 451 EGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTT----------HPGWHSEAGGRR 500
G KG+ + + L P P G A T G E+G +
Sbjct: 306 TGAKGAA----GLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKG 361
Query: 501 DGGAG--QVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG-- 556
+ G+ Q G G G+RGP +AG AG RG+ R GA +G++G
Sbjct: 362 EPGSAGPQGPPGPSGEEGKRGPNGEAG-SAGPPGPPGLRGSPGSRGLPGADGRAGVMGPP 420
Query: 557 GAVGARG 563
G+ GA G
Sbjct: 421 GSRGASG 427
Score = 37.7 bits (86), Expect = 0.036
Identities = 55/183 (30%), Positives = 70/183 (38%), Gaps = 18/183 (9%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
+AG G P L PG+ G G G E VG + G P PA G PG++G
Sbjct: 437 DAGRPGEPGLMGPRGL-PGSPGNIGPAGK-EGPVGLPGIDGRPGPIGPAGARGEPGNIGF 494
Query: 450 GEGVKGSQ----RHGDSTTSLIISYALVTIMDFPIPQG-LALTTHPGWHSEAGGRRDGG- 503
G KG ++GD + L P P G PG GG+ + G
Sbjct: 495 -PGPKGPTGDPGKNGDKGHA-----GLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGP 548
Query: 504 -AGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG--GAVG 560
QGL GP G G + G + G G A R +G SG G G +G
Sbjct: 549 PGPPGFQGLPGPSGPAGEVGKPG-ERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIG 607
Query: 561 ARG 563
+RG
Sbjct: 608 SRG 610
Score = 37.7 bits (86), Expect = 0.036
Identities = 43/136 (31%), Positives = 54/136 (39%), Gaps = 25/136 (18%)
Query: 391 AGSEALRGSSAPH-PLVP-GAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVG 448
AG RG + P P+ P GAVG G G G + +G P P PG+ G G
Sbjct: 972 AGKHGNRGETGPSGPVGPAGAVGPRGPSG----PQGIRGDKGEPGEKGPRGLPGLKGHNG 1027
Query: 449 AGEGVKG-SQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGR--RDGGAG 505
+G+ G + HGD P G A P S G+ R G G
Sbjct: 1028 L-QGLPGIAGHHGDQGA--------------PGSVGPAGPRGPAGPSGPAGKDGRTGHPG 1072
Query: 506 QV-VQGLRGPHGRRGP 520
V G+RGP G +GP
Sbjct: 1073 TVGPAGIRGPQGHQGP 1088
Score = 36.6 bits (83), Expect = 0.081
Identities = 47/142 (33%), Positives = 55/142 (38%), Gaps = 27/142 (19%)
Query: 391 AGSEALRGSSA-PHPLVPGAVGAEGVRGLWEQE--VGSKALRGSPAHSSPALHPGVPGSV 447
AG+ L G P P+ GA GA G RGL + GSK G+ A G PG
Sbjct: 318 AGAPGLPGPRGIPGPV--GAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPS 375
Query: 448 GAGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQV 507
G EG +G S P P GL + PG G DG AG +
Sbjct: 376 GE-EGKRGPNGEAGSAGP-------------PGPPGLRGS--PGSRGLPGA--DGRAGVM 417
Query: 508 ----VQGLRGPHGRRGPQVQAG 525
+G GP G RGP AG
Sbjct: 418 GPPGSRGASGPAGVRGPNGDAG 439
Score = 36.6 bits (83), Expect = 0.081
Identities = 63/220 (28%), Positives = 74/220 (33%), Gaps = 42/220 (19%)
Query: 392 GSEALRGSSAPHPLV--PGAVGAEGVRGLW--------EQEVGSKALRGSPAHSSPALHP 441
G RG P + PGA G G G G + LRG P
Sbjct: 772 GPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRT 831
Query: 442 GVPGSVGAG--EGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGL----ALTTHPGWHSE 495
G G+VG G KG G++ T+ P PQGL + PG E
Sbjct: 832 GEVGAVGPPGFAGEKGPS--GEAGTA--------GPPGTPGPQGLLGAPGILGLPGSRGE 881
Query: 496 AGGRRDGGAGQVVQ----GLRGPHGRRGPQVQAG--------WQAGRQAAALGRGAALRR 543
G G AG V + G+ GP G RGP G +AGR G R
Sbjct: 882 RG--LPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRD 939
Query: 544 AAQGAGSASGLLG--GAVGARGRRRAHKPVVVGERLRGRG 581
G G G G VGA G H PV + RG
Sbjct: 940 GQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRG 979
Score = 35.4 bits (80), Expect = 0.18
Identities = 52/179 (29%), Positives = 63/179 (35%), Gaps = 13/179 (7%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAG- 450
G++ G P P GA G GVRG G G P P PG PG++G
Sbjct: 409 GADGRAGVMGP-PGSRGASGPAGVRG----PNGDAGRPGEPGLMGPRGLPGSPGNIGPAG 463
Query: 451 -EGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQVVQ 509
EG G + + A + P T PG + + G GA +
Sbjct: 464 KEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGA----R 519
Query: 510 GLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLGGAVGARGRRRAH 568
G GP G G Q G Q G Q +G QG SG G VG G R H
Sbjct: 520 GAPGPDGNNGAQGPPGPQ-GVQGGKGEQGPPGPPGFQGLPGPSG-PAGEVGKPGERGLH 576
Score = 33.5 bits (75), Expect = 0.68
Identities = 55/190 (28%), Positives = 66/190 (34%), Gaps = 37/190 (19%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
E G G + P GA G G +G E G+K +G P G G G
Sbjct: 716 EVGPAGPNGFAGP----AGAAGQPGAKG----ERGAKGPKGENGVVGPTGPVGAAGPAGP 767
Query: 450 G--EGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRD--GGAG 505
G GS+ G + FP G A T P S G G AG
Sbjct: 768 NGPPGPAGSRGDGGPPG----------MTGFP---GAAGRTGPPGPSGISGPPGPPGPAG 814
Query: 506 QVVQGLRGPHGRRGP-----QVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG---- 556
+ +GLRGP G +GP +V A G G A G GLLG
Sbjct: 815 K--EGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGI 872
Query: 557 -GAVGARGRR 565
G G+RG R
Sbjct: 873 LGLPGSRGER 882
Score = 32.3 bits (72), Expect = 1.5
Identities = 49/194 (25%), Positives = 67/194 (34%), Gaps = 42/194 (21%)
Query: 407 PGAVGAEGVRGLWEQ--------EVGSKALRGSPAHSSPALHPGVPGSVGAGEG------ 452
PGAVG+ GV G + G G P H +PG G VGA
Sbjct: 909 PGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGP 968
Query: 453 VKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQVVQGLR 512
V + +HG+ +G + P + A G R Q ++G +
Sbjct: 969 VGPAGKHGN--------------------RGETGPSGPVGPAGAVGPRGPSGPQGIRGDK 1008
Query: 513 GPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG-----GAVGARGR--R 565
G G +GP+ G + L G A QGA + G G G G G+ R
Sbjct: 1009 GEPGEKGPRGLPGLKGHNGLQGL-PGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGR 1067
Query: 566 RAHKPVVVGERLRG 579
H V +RG
Sbjct: 1068 TGHPGTVGPAGIRG 1081
Score = 31.2 bits (69), Expect = 3.4
Identities = 51/190 (26%), Positives = 63/190 (33%), Gaps = 45/190 (23%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQE-----------VGSKALRGSPAHSSPALH 440
G L G P PGA GA G +G G++ G P + H
Sbjct: 91 GPMGLMGPRGP----PGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGH 146
Query: 441 PGVPGSVGAGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAG-GR 499
PG PG G GV G Q FP GL PG+ G
Sbjct: 147 PGKPGRPGE-RGVVGPQ----------------GARGFPGTPGL-----PGFKGIRGHNG 184
Query: 500 RDGGAGQV-VQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG-- 556
DG GQ G++G G G G Q G + RG GA + G +G
Sbjct: 185 LDGLKGQPGAPGVKGEPGAPGENGTPG-QTGARGLPGERGRVGAPGPAGARGSDGSVGPV 243
Query: 557 ---GAVGARG 563
G +G+ G
Sbjct: 244 GPAGPIGSAG 253
Score = 30.0 bits (66), Expect = 7.6
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAGE 451
G RG + P G G +G G VG +RG H PA PG PG G
Sbjct: 1048 GPAGPRGPAGPS----GPAGKDGRTG-HPGTVGPAGIRGPQGHQGPAGPPGPPGPPGP-P 1101
Query: 452 GVKG 455
GV G
Sbjct: 1102 GVSG 1105
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 47.8 bits (112), Expect = 4e-05
Identities = 87/329 (26%), Positives = 111/329 (33%), Gaps = 64/329 (19%)
Query: 392 GSEALRGSSA---PHPLVPGAVGAEGVRGLWEQE--VGSKALRGSPAHSSPALHPGVPGS 446
G + +G A P L+ G G EG GL +G G P P PG+PG+
Sbjct: 450 GEKGQKGEPAIIEPGMLIEGPPGPEGPAGLPGPPGTMGPTGQVGDPGERGPPGRPGLPGA 509
Query: 447 VG---------------AGEGVKGSQ----RHGDSTTSLIISYALVTIMDFPIPQGLALT 487
G G G GS+ +S I+ A + + P GL
Sbjct: 510 DGLPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQARLALRGPAGPMGLTGR 569
Query: 488 THPGWHSEAGGRRDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQG 547
P +GG + G G V G +GP G +GP AG + GR+ A GA G
Sbjct: 570 PGPVGPPGSGGLK-GEPGDV--GPQGPRGVQGPPGPAG-KPGRRGRAGSDGARGMPGQTG 625
Query: 548 AGSASGL--LGGAVGARGRRRAHKPVVVGERLRGRGARVRTWRRGGGRVAQRGQLAHVLR 605
G L G G +G R P G R G V RG
Sbjct: 626 PKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGE-----RGDDGEVGPRGLPGEPGP 680
Query: 606 RQVEGAAAGLTPHVPPVLGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEP 665
R + G P PP + QP P G+ P + EP
Sbjct: 681 RGLLGPKGPPGPPGPPGVTGMDGQP----GPKGNVGP-------------------QGEP 717
Query: 666 GPP----SPARTAPCSP--ALTPPPEKGP 688
GPP +P P A+ PP EKGP
Sbjct: 718 GPPGQQGNPGAQGLPGPQGAIGPPGEKGP 746
Score = 43.9 bits (102), Expect = 5e-04
Identities = 84/307 (27%), Positives = 101/307 (32%), Gaps = 55/307 (17%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
+ G +G + P P PG VG +G G E G RG P P G+PG G
Sbjct: 980 QRGETGFQGKTGP-PGPPGVVGPQGPTG----ETGPMGERGHPGPPGPPGEQGLPGLAGK 1034
Query: 450 GEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGL-ALTTHPGWHSEAGGRRDGGAGQV- 507
EG KG P P GL PG G R G G V
Sbjct: 1035 -EGTKGD----------------------PGPAGLPGKDGPPGLRGFPGDR--GLPGPVG 1069
Query: 508 VQGLRGPHGRRGPQVQAG--WQAGRQAAALGRGAALRRAAQGAGSASGLLG-----GAVG 560
GL+G G GP AG + G AA G R QG +G G G G
Sbjct: 1070 ALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQG 1129
Query: 561 ARGRRRAHKPVVVGERLRGRGARVRTWRRGGGRVAQRGQLAHVLRRQVEGAAAGLTPHVP 620
GR PV L G V G +G++ ++ +G P P
Sbjct: 1130 PAGRDGLQGPV----GLPGPAGPVGP----PGEDGDKGEIGEPGQKGSKGDKGEQGPPGP 1181
Query: 621 PVLGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEPGPPSPARTAPCSPAL 680
PQ P+ P G +G+ Q R PGPP P
Sbjct: 1182 ----TGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPR-GFPGPPGPVGLQGLP--- 1233
Query: 681 TPPPEKG 687
PP EKG
Sbjct: 1234 GPPGEKG 1240
Score = 42.0 bits (97), Expect = 0.002
Identities = 42/140 (30%), Positives = 51/140 (36%), Gaps = 36/140 (25%)
Query: 390 EAGSEALRGSSAP--HPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSV 447
EAG E G + P PG G +G+RG+ VG + L GSP P G PG
Sbjct: 1412 EAGLEGPPGKTGPIGPQGAPGKPGPDGLRGI-PGPVGEQGLPGSPGPDGPPGPMGPPGLP 1470
Query: 448 G--AGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAG 505
G G KG + H P + L PG E G R
Sbjct: 1471 GLKGDSGPKGEKGH---------------------PGLIGLIGPPGEQGEKGDR------ 1503
Query: 506 QVVQGLRGPHGRRGPQVQAG 525
GL GP G GP+ + G
Sbjct: 1504 ----GLPGPQGSSGPKGEQG 1519
Score = 35.0 bits (79), Expect = 0.24
Identities = 85/347 (24%), Positives = 109/347 (31%), Gaps = 70/347 (20%)
Query: 392 GSEALRGSSAPH--PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
G +G+ P P PG G G +GL G + G P P PG+PG GA
Sbjct: 703 GQPGPKGNVGPQGEPGPPGQQGNPGAQGL----PGPQGAIGPPGEKGPLGKPGLPGMPGA 758
Query: 450 G-----------EGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGL-------------- 484
G KG Q G I Y P P+G+
Sbjct: 759 DGPPGHPGKEGPPGEKGGQ--GPPGPQGPIGY--------PGPRGVKGADGIRGLKGTKG 808
Query: 485 --ALTTHPGWHSEAGGRRDGG-----AGQVVQGLRGPHGRRGPQVQAG-----WQAGRQA 532
PG+ + G + D G + G GP GR GP G + G+
Sbjct: 809 EKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLG 868
Query: 533 AALGRGAALRRAAQGAGSASGLLGGAVGARGRRRAHKPVVVGERLRGRGARVRTWRRGGG 592
G R+ +G+ G G GR KP RG R T RG
Sbjct: 869 VPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKP-------GPRGQRGPTGPRG-- 919
Query: 593 RVAQRGQLAHVLRRQVEGAAAGLTPHVPPVLGA--APQQPVALIRPDGHAAPVLAGVLEG 650
+RG + +G + G P PP PQ P P G P L G
Sbjct: 920 ---ERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPG 976
Query: 651 VLHQ--HLHHRRREPEPGPPSPARTAPCSPALTPPPEKG-PAPVACP 694
Q + + PGPP + P E+G P P P
Sbjct: 977 HPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPP 1023
Score = 32.7 bits (73), Expect = 1.2
Identities = 51/178 (28%), Positives = 62/178 (34%), Gaps = 41/178 (23%)
Query: 407 PGAVGAEGVRGLWEQE--------VGSKALRGSPAHSSPALHPGVPGSVG--AGEGVKGS 456
PGAVG +G G + G K RG S P+ G PG G +G KGS
Sbjct: 1278 PGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGS 1337
Query: 457 QRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRR--DGGAGQV------- 507
+ FP G P G + DG GQ
Sbjct: 1338 PGP----------------VGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTG 1381
Query: 508 VQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG--GAVGARG 563
G GP G+RGP AG GRQ +GA +G +G +G GA G G
Sbjct: 1382 EPGPSGPPGKRGPPGPAG-PEGRQGE---KGAKGEAGLEGPPGKTGPIGPQGAPGKPG 1435
Score = 32.3 bits (72), Expect = 1.5
Identities = 54/184 (29%), Positives = 63/184 (34%), Gaps = 60/184 (32%)
Query: 391 AGSEALRGSSAPHPLVPGAVGAEGVRGL--WEQEVGSKALRGSPAHSSPALHPGVPGSVG 448
AGS+ RG +PG G +G RG G K RG P S P PG PG G
Sbjct: 612 AGSDGARG-------MPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGP---PGPPGDDG 661
Query: 449 AGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQVV 508
+R D P+GL PG E G R
Sbjct: 662 --------ERGDDGEVG---------------PRGL-----PG---EPGPR--------- 681
Query: 509 QGLRGPHGRRGPQVQAG-----WQAGRQAAALGRGAALRRAAQGAGSASGLLG--GAVGA 561
GL GP G GP G Q G + +G QG A GL G GA+G
Sbjct: 682 -GLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGP 740
Query: 562 RGRR 565
G +
Sbjct: 741 PGEK 744
Score = 30.4 bits (67), Expect = 5.8
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
Query: 392 GSEALRGSSAP-----HPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGS 446
G + + G S P P +PG G +G +G G +G H P PG PG
Sbjct: 1516 GEQGITGPSGPIGPPGPPGLPGPPGPKGAKG----SSGPTGPKGEAGHPGPPGPPGPPGE 1571
Query: 447 V 447
V
Sbjct: 1572 V 1572
Score = 30.0 bits (66), Expect = 7.6
Identities = 36/141 (25%), Positives = 46/141 (32%), Gaps = 35/141 (24%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQ-----EVGSKALRGSPAHSSPALHPGVP 444
+ G E RG P PG VG +G+ G + +VG G P P+ PG
Sbjct: 1211 QKGDEGPRGFPGP----PGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGAD 1266
Query: 445 GSVGAGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGA 504
G G G+ P + PG E G +GG
Sbjct: 1267 GPQGPPGGIGN-------------------------PGAVGEKGEPGEAGEPGLPGEGGP 1301
Query: 505 GQVVQGLRGPHGRRGPQVQAG 525
+G RG G GP AG
Sbjct: 1302 -PGPKGERGEKGESGPSGAAG 1321
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 47.8 bits (112), Expect = 4e-05
Identities = 101/366 (27%), Positives = 120/366 (32%), Gaps = 79/366 (21%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAGE 451
G +G P PG G G++G + VG L G+P PG+PG G G+
Sbjct: 182 GPPGFQGEPGPQG-EPGPPGDRGLKG--DNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGK 238
Query: 452 -------------------GVKGSQRH----GDSTTSLIISYALVTIMDFPIPQGLALTT 488
GV G + G + + P PQG +
Sbjct: 239 PGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPS--- 295
Query: 489 HPGWHSEAGGRRDGG----AGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRA 544
G E G R G G + GL GP G RGP G G + G +
Sbjct: 296 --GAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPG-LLGDRGEPGEDGEPGEQG 352
Query: 545 AQGAGSASGLLGGAVGARGRRRAHKPVVVGERLRGRGARVRTWRRGGGRVAQRGQLAHVL 604
QG G GL G A G GRR P GE G V R G G+
Sbjct: 353 PQGLGGPPGLPGSA-GLPGRRGPPGP--KGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPG 409
Query: 605 RRQVEGA-----------AAGLT--PHVPPVLGA--------APQQPVALIRPDGHAAPV 643
R + GA G T P P V GA P QP L P G P
Sbjct: 410 ERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQP-GLRGPSG--IPG 466
Query: 644 LAGVLEGVLHQHLHHRRREPE-PGPPSPART-------------APCSPALTPPPEKGPA 689
L G + Q L + EP PGPP R P SP +T PP GP
Sbjct: 467 LQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPP--GPP 524
Query: 690 PVACPP 695
PP
Sbjct: 525 GPPGPP 530
Score = 38.1 bits (87), Expect = 0.028
Identities = 97/348 (27%), Positives = 121/348 (34%), Gaps = 79/348 (22%)
Query: 396 LRGSSAPHPLVPGAVGAEGVRGL-WEQEVGSKALRGSPAHSSP--------ALHPGVPGS 446
L+G P P PG G G G + +G L G P + P A PG+PG
Sbjct: 75 LKGEPGP-PGKPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGK 133
Query: 447 VGA-------GE-GVKGSQR-HGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAG 497
VG GE G++G Q G + + +TI P QG+ PG+ E G
Sbjct: 134 VGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVP--GPPGFQGEPG 191
Query: 498 GRRDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGL--- 554
QG GP G RG + G A G+G A G +GL
Sbjct: 192 P----------QGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGA--PGPPGLPGPAGLGKP 239
Query: 555 -LGGAVGARGRR-RAHKPVVVGERLRGRGARVRTWRRGGGRVAQRGQLAHVLRRQVEGAA 612
L G GA G + + P V G R G +G V G V GAA
Sbjct: 240 GLDGLPGAPGDKGESGPPGVPGPR----GEPGAVGPKGPPGVDGVG---------VPGAA 286
Query: 613 AGLTPHVPPVLGAAP--QQPVALIRPDGHAAPVLAGV--------LEGVLHQHLHHRRRE 662
P P P + P LI P G+ P L G + G+L R E
Sbjct: 287 GLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGD-----RGE 341
Query: 663 P----EPG---------PPSPARTAPCSPALTPPPEKGPAPVACPPAL 697
P EPG PP +A PP KG A PP +
Sbjct: 342 PGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGV 389
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 47.4 bits (111), Expect = 5e-05
Identities = 57/177 (32%), Positives = 69/177 (38%), Gaps = 27/177 (15%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
EAG G P+ L PG G G +G E G + G + P+ PGVPG G
Sbjct: 320 EAGRNGAPGEKGPNGL-PGLPGRAGSKG----EKGERGRAGELGEAGPSGEPGVPGDAGM 374
Query: 450 GEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGL-ALTTHPGWHSEAGGRRDGGAGQVV 508
G +G H S +L PQG G+ + G D G
Sbjct: 375 -PGERGEAGHRGSAGALG-------------PQGPPGAPGVRGFQGQKGSMGDPGLPGP- 419
Query: 509 QGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG--GAVGARG 563
QGLRG G RGP AG G Q A G +G SGL+G G G+RG
Sbjct: 420 QGLRGDVGDRGPGGAAG-PKGDQGIAGSDGLP---GDKGELGPSGLVGPKGESGSRG 472
Score = 40.4 bits (93), Expect = 0.006
Identities = 52/176 (29%), Positives = 67/176 (38%), Gaps = 34/176 (19%)
Query: 404 PLVPGAVGAEGVRGLWEQE--------VGSKALRGSPAHSSPALHPGVPGSVGAG----- 450
P +PGA G G RG E +G +G+P + P+ PG+PG G
Sbjct: 255 PGIPGAPGKAGDRGERGPEGFRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGL 314
Query: 451 EGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGL-ALTTHPGWHSEAGGRRDGGAGQVVQ 509
+G KG + P GL L G E G R G AG++
Sbjct: 315 DGQKGEAGRNGAPGE-------------KGPNGLPGLPGRAGSKGEKGER--GRAGEL-- 357
Query: 510 GLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG--GAVGARG 563
G GP G G AG G + A RG+A QG A G+ G G G+ G
Sbjct: 358 GEAGPSGEPGVPGDAG-MPGERGEAGHRGSAGALGPQGPPGAPGVRGFQGQKGSMG 412
Score = 37.4 bits (85), Expect = 0.047
Identities = 64/241 (26%), Positives = 84/241 (34%), Gaps = 56/241 (23%)
Query: 390 EAGSEALRGSSAPHPL--VPGAVGAEGVRGL--WEQEVGSKALRGSPAHSSPALHPGVPG 445
E G + +G P +PG+VG +G RGL +G RG P PG PG
Sbjct: 203 EVGKDGEKGDPGPPGPAGLPGSVGLQGPRGLRGLPGPLGPPGDRGPIGFRGPPGIPGAPG 262
Query: 446 SVG-----AGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRR 500
G EG +G + GD + P P+G P G +
Sbjct: 263 KAGDRGERGPEGFRGPK--GD--------------LGRPGPKGTPGVAGPSGEPGMPG-K 305
Query: 501 DGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLGGAVG 560
DG G V GL G G G G + L G A + +G +G LG A G
Sbjct: 306 DGQNG--VPGLDGQKGEAGRNGAPGEKGPNGLPGL-PGRAGSKGEKGERGRAGELGEA-G 361
Query: 561 ARGRRRAHKPVVVGERLRGRGARVRTWRRGGGRVAQRGQLAHVLRRQVEGAAAGLTPHVP 620
G +P V G+ G +RG+ H G+A L P P
Sbjct: 362 PSG-----EPGVPGD---------------AGMPGERGEAGH------RGSAGALGPQGP 395
Query: 621 P 621
P
Sbjct: 396 P 396
Score = 33.1 bits (74), Expect = 0.89
Identities = 39/136 (28%), Positives = 47/136 (34%), Gaps = 34/136 (25%)
Query: 430 GSPAHSSPALHPGVPGSVGAGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTH 489
G P + P PG PGS+G G +G + T L
Sbjct: 554 GRPGPAGPPGPPGPPGSIGH-PGARGPPGYRGPTGEL---------------------GD 591
Query: 490 PGWHSEAGGRRDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAG 549
PG G R D GA GL GP G +GPQ G G + A G
Sbjct: 592 PGPRGNQGDRGDKGAAGA--GLDGPEGDQGPQGPQG--------VPGTSKDGQDGAPGEP 641
Query: 550 SASGLLG--GAVGARG 563
G G GA+GA+G
Sbjct: 642 GPPGDPGLPGAIGAQG 657
Score = 30.4 bits (67), Expect = 5.8
Identities = 49/172 (28%), Positives = 60/172 (34%), Gaps = 30/172 (17%)
Query: 391 AGSEAL---RGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSV 447
AGS+ L +G P LV G G G RG E+G K +G S PG PG +
Sbjct: 444 AGSDGLPGDKGELGPSGLV-GPKGESGSRG----ELGPKGTQGPNGTSGVQGVPGPPGPL 498
Query: 448 GAGEGVKG----------------SQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPG 491
G +GV G QR + +I P PG
Sbjct: 499 GL-QGVPGVPGITGKPGVPGKEASEQRIRELCGGMISEQIAQLAAHLRKPLAPGSIGRPG 557
Query: 492 WHSEAGGRRDGGAGQVVQ-GLRGPHGRRGPQVQAG--WQAGRQAAALGRGAA 540
G G G + G RGP G RGP + G G Q +GAA
Sbjct: 558 PAGPPG--PPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGNQGDRGDKGAA 607
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 46.6 bits (109), Expect = 8e-05
Identities = 92/326 (28%), Positives = 106/326 (32%), Gaps = 60/326 (18%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVG-AG 450
G + RG S P PG G G++G G +G P P+ G PG G AG
Sbjct: 927 GPKGARGDSGP----PGRAGEPGLQG----PAGPPGEKGEPGDDGPSGAEGPPGPQGLAG 978
Query: 451 E-GVKG--SQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQV 507
+ G+ G QR L P P G PG G D G
Sbjct: 979 QRGIVGLPGQRGERGFPGL------------PGPSG-----EPGKQGAPGASGDRGPPGP 1021
Query: 508 V--QGLRGPHGRRGPQVQAGWQA--GRQAAALGRGAALRRAAQGAGSASGLLG------- 556
V GL GP G G + G GR AA +G A GA A G G
Sbjct: 1022 VGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGP 1081
Query: 557 -GAVGARGRRRAHKPVVVGERLRGRGARVRTWRRG----GGRVAQRGQLAHVLRRQVEGA 611
G G RG A P+ RG + RG G +RG H R G
Sbjct: 1082 TGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGH---RGFTGL 1138
Query: 612 AAGLTPHVPPVLGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEP-GPPSP 670
GL P P P G PV +G P P GPP P
Sbjct: 1139 Q-GLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGA--------NGIPGPIGPPGP 1189
Query: 671 -ARTAPCSPALTPPPEKGPAPVACPP 695
R+ PA PP GP PP
Sbjct: 1190 RGRSGETGPA-GPPGNPGPPGPPGPP 1214
Score = 44.7 bits (104), Expect = 3e-04
Identities = 50/170 (29%), Positives = 66/170 (38%), Gaps = 30/170 (17%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAG--------EGVKGSQR 458
PG GA G +G E G RG P PG PGS G +G+ G++
Sbjct: 365 PGFPGAPGAKG----EAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKG 420
Query: 459 HGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQVVQ-GLRGPHGR 517
+ + FP P+G PG G G GQ + G+ G G
Sbjct: 421 SAGAP-------GIAGAPGFPGPRG-----PPGPQGATGPL--GPKGQTGEPGIAGFKGE 466
Query: 518 RGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG--GAVGARGRR 565
+GP+ + G AG Q A G +R A+G G +G G GA G R
Sbjct: 467 QGPKGEPG-PAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNR 515
Score = 40.8 bits (94), Expect = 0.004
Identities = 58/211 (27%), Positives = 73/211 (34%), Gaps = 52/211 (24%)
Query: 390 EAGSEALRGSS-------APHPLVP----------GAVGAEGVRGLWEQEVGSKALRGSP 432
EAG+ ++G S +P P+ P G GA G RG G G P
Sbjct: 301 EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARG----NDGQPGPAGPP 356
Query: 433 AHSSPALHPGVPGSVGA--------GEGVKGSQ-RHGDSTTSLIISYALVTIMDFPIPQG 483
PA PG PG+ GA G +G+Q G+ T P P G
Sbjct: 357 GPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTP-----------GSPGPAG 405
Query: 484 LALTTHPGWHSEAGGRRDGGAGQV--VQGLRGPHGRRGPQVQAG-----WQAGRQAAALG 536
+ +PG G + GA + G GP G GPQ G Q G A
Sbjct: 406 --ASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGF 463
Query: 537 RGAALRRAAQGAGSASGLLG--GAVGARGRR 565
+G + G G G G G RG R
Sbjct: 464 KGEQGPKGEPGPAGPQGAPGPAGEEGKRGAR 494
Score = 40.0 bits (92), Expect = 0.007
Identities = 59/196 (30%), Positives = 73/196 (37%), Gaps = 31/196 (15%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
E G L G S PG GA G G + G G P + PA PG GS GA
Sbjct: 991 ERGFPGLPGPSGE----PGKQGAPGASG----DRGPPGPVGPPGLTGPAGEPGREGSPGA 1042
Query: 450 --------GEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRR- 500
GVKG + T + + P P G T G EAG +
Sbjct: 1043 DGPPGRDGAAGVKGDR----GETGAVGAPGAPGPPGSPGPAGP--TGKQGDRGEAGAQGP 1096
Query: 501 ---DGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG- 556
G AG +G++GP G RG + +AG + G + RG + G SG G
Sbjct: 1097 MGPSGPAG--ARGIQGPQGPRGDKGEAG-EPGERGLKGHRGFTGLQGLPGPPGPSGDQGA 1153
Query: 557 -GAVGARGRRRAHKPV 571
G G G R PV
Sbjct: 1154 SGPAGPSGPRGPPGPV 1169
Score = 37.4 bits (85), Expect = 0.047
Identities = 82/314 (26%), Positives = 100/314 (31%), Gaps = 71/314 (22%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
E G + G+ P P G G G+ GL G + RG P P+ PG G+ GA
Sbjct: 958 EPGDDGPSGAEGP-PGPQGLAGQRGIVGL----PGQRGERGFPGLPGPSGEPGKQGAPGA 1012
Query: 450 GEGVKGSQRHGDSTTSLIISYALVTIMDFPI-PQGL-ALTTHPGWHSEAGG----RRDGG 503
G +G P+ P GL PG G RDG
Sbjct: 1013 -SGDRGPPG--------------------PVGPPGLTGPAGEPGREGSPGADGPPGRDGA 1051
Query: 504 AGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG--GAVGA 561
AG V+G RG G G A G + G ++ +G A G +G G GA
Sbjct: 1052 AG--VKGDRGETGAVG----APGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGA 1105
Query: 562 RGRRRAHKPVVVGERLRGRGARVRTWRRGGGRVAQRGQLAHVLRRQVEGAAAGLTPHVPP 621
RG + P R + G +RG H R G GL P
Sbjct: 1106 RGIQGPQGP--------------RGDKGEAGEPGERGLKGH---RGFTG-LQGLPGPPGP 1147
Query: 622 VLGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEP-GPPSP----ARTAPC 676
P P G PV +G P P GPP P T P
Sbjct: 1148 SGDQGASGPAGPSGPRGPPGPVGPSGKDGA--------NGIPGPIGPPGPRGRSGETGPA 1199
Query: 677 SPALTPPPEKGPAP 690
P P P P P
Sbjct: 1200 GPPGNPGPPGPPGP 1213
Score = 35.8 bits (81), Expect = 0.14
Identities = 48/178 (26%), Positives = 61/178 (34%), Gaps = 26/178 (14%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVG- 448
E G G + P PGA G G +G + E G K G+P P+ PG G G
Sbjct: 826 ETGPPGPAGFAGP----PGADGQPGAKGE-QGEAGQKGDAGAPGPQGPSGAPGPQGPTGV 880
Query: 449 -AGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQV 507
+G +G+Q +T P PG + G G
Sbjct: 881 TGPKGARGAQGPPGAT---------------GFPGAAGRVGPPGSNGNPGPPGPPGPSG- 924
Query: 508 VQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG--GAVGARG 563
G +G G GP +AG + G Q A G G A G G G G RG
Sbjct: 925 KDGPKGARGDSGPPGRAG-EPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRG 981
Score = 35.0 bits (79), Expect = 0.24
Identities = 52/179 (29%), Positives = 64/179 (35%), Gaps = 48/179 (26%)
Query: 408 GAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAGEGVKGSQRHGDSTTSLI 467
G G +G RG + G K +G+P PG PG+ G G G
Sbjct: 126 GPAGEQGPRG----DRGDKGEKGAPGPRGRDGEPGTPGNPGP-PGPPGP----------- 169
Query: 468 ISYALVTIMDFPIPQGL----ALTTHPGWHSEAGGRRDGGAGQVVQGLRGPHGRRGPQVQ 523
P P GL A G+ +AGG + G V+QG GP G RGP
Sbjct: 170 -----------PGPPGLGGNFAAQMAGGFDEKAGGAQLG----VMQGPMGPMGPRGPPGP 214
Query: 524 AGWQAGRQAAALGRGAALRRAAQGAGSASGLLG--GAVGARGR----RRAHKPVVVGER 576
AG A +G G SG +G G G G+ A KP GER
Sbjct: 215 AG-------APGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGER 266
Score = 32.7 bits (73), Expect = 1.2
Identities = 49/164 (29%), Positives = 59/164 (35%), Gaps = 35/164 (21%)
Query: 406 VPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAGEGVKGSQRHGDSTTS 465
VPG GA G+ G E G RGSP G+PG+ G +G KG+
Sbjct: 685 VPGEAGAPGLVGP-RGERGFPGERGSPGAQGLQGPRGLPGTPGT-DGPKGASGPAGP--- 739
Query: 466 LIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGG-AGQVVQGLRGPHGRRGPQVQA 524
P QG PG G R G AG +G RG G +GP+
Sbjct: 740 -------------PGAQG-----PPGLQGMPGERGAAGIAGP--KGDRGDVGEKGPEGAP 779
Query: 525 GWQAGRQAAALGRGAALRRAAQGAGSASGLLG-----GAVGARG 563
G GR G GA G +G G+ GARG
Sbjct: 780 GKDGGRGLT----GPIGPPGPAGANGEKGEVGPPGPAGSAGARG 819
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 46.6 bits (109), Expect = 8e-05
Identities = 92/326 (28%), Positives = 106/326 (32%), Gaps = 60/326 (18%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVG-AG 450
G + RG S P PG G G++G G +G P P+ G PG G AG
Sbjct: 858 GPKGARGDSGP----PGRAGEPGLQG----PAGPPGEKGEPGDDGPSGAEGPPGPQGLAG 909
Query: 451 E-GVKG--SQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQV 507
+ G+ G QR L P P G PG G D G
Sbjct: 910 QRGIVGLPGQRGERGFPGL------------PGPSG-----EPGKQGAPGASGDRGPPGP 952
Query: 508 V--QGLRGPHGRRGPQVQAGWQA--GRQAAALGRGAALRRAAQGAGSASGLLG------- 556
V GL GP G G + G GR AA +G A GA A G G
Sbjct: 953 VGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGP 1012
Query: 557 -GAVGARGRRRAHKPVVVGERLRGRGARVRTWRRG----GGRVAQRGQLAHVLRRQVEGA 611
G G RG A P+ RG + RG G +RG H R G
Sbjct: 1013 TGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGH---RGFTGL 1069
Query: 612 AAGLTPHVPPVLGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEP-GPPSP 670
GL P P P G PV +G P P GPP P
Sbjct: 1070 Q-GLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGA--------NGIPGPIGPPGP 1120
Query: 671 -ARTAPCSPALTPPPEKGPAPVACPP 695
R+ PA PP GP PP
Sbjct: 1121 RGRSGETGPA-GPPGNPGPPGPPGPP 1145
Score = 44.7 bits (104), Expect = 3e-04
Identities = 50/170 (29%), Positives = 66/170 (38%), Gaps = 30/170 (17%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAG--------EGVKGSQR 458
PG GA G +G E G RG P PG PGS G +G+ G++
Sbjct: 296 PGFPGAPGAKG----EAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKG 351
Query: 459 HGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQVVQ-GLRGPHGR 517
+ + FP P+G PG G G GQ + G+ G G
Sbjct: 352 SAGAP-------GIAGAPGFPGPRG-----PPGPQGATGPL--GPKGQTGEPGIAGFKGE 397
Query: 518 RGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG--GAVGARGRR 565
+GP+ + G AG Q A G +R A+G G +G G GA G R
Sbjct: 398 QGPKGEPG-PAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNR 446
Score = 40.8 bits (94), Expect = 0.004
Identities = 58/211 (27%), Positives = 73/211 (34%), Gaps = 52/211 (24%)
Query: 390 EAGSEALRGSS-------APHPLVP----------GAVGAEGVRGLWEQEVGSKALRGSP 432
EAG+ ++G S +P P+ P G GA G RG G G P
Sbjct: 232 EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARG----NDGQPGPAGPP 287
Query: 433 AHSSPALHPGVPGSVGA--------GEGVKGSQ-RHGDSTTSLIISYALVTIMDFPIPQG 483
PA PG PG+ GA G +G+Q G+ T P P G
Sbjct: 288 GPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTP-----------GSPGPAG 336
Query: 484 LALTTHPGWHSEAGGRRDGGAGQV--VQGLRGPHGRRGPQVQAG-----WQAGRQAAALG 536
+ +PG G + GA + G GP G GPQ G Q G A
Sbjct: 337 --ASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGF 394
Query: 537 RGAALRRAAQGAGSASGLLG--GAVGARGRR 565
+G + G G G G G RG R
Sbjct: 395 KGEQGPKGEPGPAGPQGAPGPAGEEGKRGAR 425
Score = 40.0 bits (92), Expect = 0.007
Identities = 59/196 (30%), Positives = 73/196 (37%), Gaps = 31/196 (15%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
E G L G S PG GA G G + G G P + PA PG GS GA
Sbjct: 922 ERGFPGLPGPSGE----PGKQGAPGASG----DRGPPGPVGPPGLTGPAGEPGREGSPGA 973
Query: 450 --------GEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRR- 500
GVKG + T + + P P G T G EAG +
Sbjct: 974 DGPPGRDGAAGVKGDR----GETGAVGAPGAPGPPGSPGPAGP--TGKQGDRGEAGAQGP 1027
Query: 501 ---DGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG- 556
G AG +G++GP G RG + +AG + G + RG + G SG G
Sbjct: 1028 MGPSGPAG--ARGIQGPQGPRGDKGEAG-EPGERGLKGHRGFTGLQGLPGPPGPSGDQGA 1084
Query: 557 -GAVGARGRRRAHKPV 571
G G G R PV
Sbjct: 1085 SGPAGPSGPRGPPGPV 1100
Score = 37.4 bits (85), Expect = 0.047
Identities = 82/314 (26%), Positives = 100/314 (31%), Gaps = 71/314 (22%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
E G + G+ P P G G G+ GL G + RG P P+ PG G+ GA
Sbjct: 889 EPGDDGPSGAEGP-PGPQGLAGQRGIVGL----PGQRGERGFPGLPGPSGEPGKQGAPGA 943
Query: 450 GEGVKGSQRHGDSTTSLIISYALVTIMDFPI-PQGL-ALTTHPGWHSEAGG----RRDGG 503
G +G P+ P GL PG G RDG
Sbjct: 944 -SGDRGPPG--------------------PVGPPGLTGPAGEPGREGSPGADGPPGRDGA 982
Query: 504 AGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG--GAVGA 561
AG V+G RG G G A G + G ++ +G A G +G G GA
Sbjct: 983 AG--VKGDRGETGAVG----APGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGA 1036
Query: 562 RGRRRAHKPVVVGERLRGRGARVRTWRRGGGRVAQRGQLAHVLRRQVEGAAAGLTPHVPP 621
RG + P R + G +RG H R G GL P
Sbjct: 1037 RGIQGPQGP--------------RGDKGEAGEPGERGLKGH---RGFTG-LQGLPGPPGP 1078
Query: 622 VLGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEP-GPPSP----ARTAPC 676
P P G PV +G P P GPP P T P
Sbjct: 1079 SGDQGASGPAGPSGPRGPPGPVGPSGKDGA--------NGIPGPIGPPGPRGRSGETGPA 1130
Query: 677 SPALTPPPEKGPAP 690
P P P P P
Sbjct: 1131 GPPGNPGPPGPPGP 1144
Score = 35.8 bits (81), Expect = 0.14
Identities = 48/178 (26%), Positives = 61/178 (34%), Gaps = 26/178 (14%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVG- 448
E G G + P PGA G G +G + E G K G+P P+ PG G G
Sbjct: 757 ETGPPGPAGFAGP----PGADGQPGAKGE-QGEAGQKGDAGAPGPQGPSGAPGPQGPTGV 811
Query: 449 -AGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQV 507
+G +G+Q +T P PG + G G
Sbjct: 812 TGPKGARGAQGPPGAT---------------GFPGAAGRVGPPGSNGNPGPPGPPGPSG- 855
Query: 508 VQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG--GAVGARG 563
G +G G GP +AG + G Q A G G A G G G G RG
Sbjct: 856 KDGPKGARGDSGPPGRAG-EPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRG 912
Score = 35.0 bits (79), Expect = 0.24
Identities = 52/179 (29%), Positives = 64/179 (35%), Gaps = 48/179 (26%)
Query: 408 GAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAGEGVKGSQRHGDSTTSLI 467
G G +G RG + G K +G+P PG PG+ G G G
Sbjct: 57 GPAGEQGPRG----DRGDKGEKGAPGPRGRDGEPGTPGNPGP-PGPPGP----------- 100
Query: 468 ISYALVTIMDFPIPQGL----ALTTHPGWHSEAGGRRDGGAGQVVQGLRGPHGRRGPQVQ 523
P P GL A G+ +AGG + G V+QG GP G RGP
Sbjct: 101 -----------PGPPGLGGNFAAQMAGGFDEKAGGAQLG----VMQGPMGPMGPRGPPGP 145
Query: 524 AGWQAGRQAAALGRGAALRRAAQGAGSASGLLG--GAVGARGR----RRAHKPVVVGER 576
AG A +G G SG +G G G G+ A KP GER
Sbjct: 146 AG-------APGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGER 197
Score = 32.7 bits (73), Expect = 1.2
Identities = 49/164 (29%), Positives = 59/164 (35%), Gaps = 35/164 (21%)
Query: 406 VPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAGEGVKGSQRHGDSTTS 465
VPG GA G+ G E G RGSP G+PG+ G +G KG+
Sbjct: 616 VPGEAGAPGLVGP-RGERGFPGERGSPGAQGLQGPRGLPGTPGT-DGPKGASGPAGP--- 670
Query: 466 LIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGG-AGQVVQGLRGPHGRRGPQVQA 524
P QG PG G R G AG +G RG G +GP+
Sbjct: 671 -------------PGAQG-----PPGLQGMPGERGAAGIAGP--KGDRGDVGEKGPEGAP 710
Query: 525 GWQAGRQAAALGRGAALRRAAQGAGSASGLLG-----GAVGARG 563
G GR G GA G +G G+ GARG
Sbjct: 711 GKDGGRGLT----GPIGPPGPAGANGEKGEVGPPGPAGSAGARG 750
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 46.2 bits (108), Expect = 1e-04
Identities = 52/171 (30%), Positives = 68/171 (39%), Gaps = 20/171 (11%)
Query: 404 PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVG-AGEGVKGSQRHGDS 462
P PG+ G G G +G + G P H P PG PG G + G+KG +
Sbjct: 1263 PGPPGSTGRPGAEGE-PGAMGPQGRPGPPGHVGPPGPPGQPGPAGISAVGLKGDR----- 1316
Query: 463 TTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAG-QVVQGLRGPHGRRGPQ 521
L + P P G HPG E G DG AG + G +G +G GP+
Sbjct: 1317 --GATGERGLAGLPGQPGPPG-----HPGPPGEPG--TDGAAGKEGPPGKQGFYGPPGPK 1367
Query: 522 VQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG--GAVGARGRRRAHKP 570
G AG++ A +G A G + G +G G G RG A P
Sbjct: 1368 GDPG-AAGQKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGAPGP 1417
Score = 42.0 bits (97), Expect = 0.002
Identities = 54/184 (29%), Positives = 67/184 (36%), Gaps = 40/184 (21%)
Query: 362 MPGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSA--PHPLVPGAVGAEGVRGLW 419
+PG D+ + L P A +EA + G P +PG G G RG
Sbjct: 984 VPGLDNCAQCFLSLERPRA--------EEARGDNSEGDPGCVGSPGLPGPPGLPGQRG-- 1033
Query: 420 EQEVGSKALRGSPAHSSPALHPGVPGSVGAGEGVKGSQRHGDSTTSLIISYALVTIMDFP 479
E G +RGSP P PG PG+VG+ G+ G Q T L P
Sbjct: 1034 --EEGPPGMRGSPGPPGPIGPPGFPGAVGS-PGLPGLQGERGLT-------GLTGDKGEP 1083
Query: 480 IPQGL----ALTTHPGWHSEAGGR-RDGGAGQVVQ-------------GLRGPHGRRGPQ 521
P G T PG G R G AG+ + G GP G RGPQ
Sbjct: 1084 GPPGQPGYPGATGPPGLPGIKGERGYTGSAGEKGEPGPPGSEGLPGPPGPAGPRGERGPQ 1143
Query: 522 VQAG 525
+G
Sbjct: 1144 GNSG 1147
Score = 37.7 bits (86), Expect = 0.036
Identities = 48/165 (29%), Positives = 59/165 (35%), Gaps = 38/165 (23%)
Query: 402 PHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAGEGVKGSQRHGD 461
P P AVG +G RG G + L G P P HPG PG G +G G +
Sbjct: 1302 PGPAGISAVGLKGDRGA----TGERGLAGLPGQPGPPGHPGPPGEPGT-DGAAGKEG--- 1353
Query: 462 STTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRD-GGAGQVVQGLRGPHGRRGP 520
P G G++ G + D G AGQ +G G GR G
Sbjct: 1354 -------------------PPG-----KQGFYGPPGPKGDPGAAGQ--KGQAGEKGRAGM 1387
Query: 521 QVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG--GAVGARG 563
G ++G G A R GA SG G G G+ G
Sbjct: 1388 PGGPG-KSGSMGPVGPPGPAGERGHPGAPGPSGSPGLPGVPGSMG 1431
Score = 36.6 bits (83), Expect = 0.081
Identities = 55/183 (30%), Positives = 66/183 (36%), Gaps = 29/183 (15%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQ--EVGSKALRGSPAHSSPALHPGVPGSVGA 449
GSE L G PG G G RG E G + +G P P PG PG VG+
Sbjct: 1123 GSEGLPGP-------PGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGS 1175
Query: 450 GEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAG-GRRDGGAGQVV 508
G G Q S S + P P G PG AG DG G+
Sbjct: 1176 -PGPPGPQAEKGSEGIRGPS----GLPGSPGPPG-----PPGIQGPAGLDGLDGKDGK-- 1223
Query: 509 QGLRGPHGRRGPQVQAG-----WQAGRQAAALGRGAALRRAAQGAGSASGLLG--GAVGA 561
GLRG G GP G + G +G + G+ G G GA+G
Sbjct: 1224 PGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSTGRPGAEGEPGAMGP 1283
Query: 562 RGR 564
+GR
Sbjct: 1284 QGR 1286
Score = 35.8 bits (81), Expect = 0.14
Identities = 79/297 (26%), Positives = 104/297 (35%), Gaps = 42/297 (14%)
Query: 406 VPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAGEGVKGSQRHGDSTTS 465
+PG G GV GL K +G+ + PA PG PG VG G+KG++
Sbjct: 585 LPGLPGRAGVPGL-------KGEKGNFGEAGPAGSPGPPGPVGPA-GIKGAKGEPCEPCP 636
Query: 466 LIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQVVQGLRGPHGRRGPQVQAG 525
AL + D + + PG E G G G + G +G G RG + Q G
Sbjct: 637 -----ALSNLQDGDV----RVVALPGPSGEKG--EPGPPGFGLPGKQGKAGERGLKGQKG 685
Query: 526 WQAGRQAAALGRGAALRRAAQGAGSASGLLGGAVGARGRRRAHKPVVVG--ERLRGR--- 580
AG G R G G G G +G P + G + GR
Sbjct: 686 -DAGNPGDPGTPGTTGRPGLSGEPGVQG-PAGPKGEKGDGCTACPSLQGTVTDMAGRPGQ 743
Query: 581 -GARVRTWRRGGGRVAQRGQLAHVLRRQVEGAAAGLTPHVPPVLGAAPQQPVALIRPDGH 639
G + G GR + GQ V+G P + V G + P G
Sbjct: 744 PGPKGEQGPEGVGRPGKPGQPG---LPGVQG-----PPGLKGVQGEPGPPGRGVQGPQGE 795
Query: 640 -AAPVLAGVLEGVLHQHLHHRRREPEPGPPSPARTAPCSPALTPPPEKGPAPVACPP 695
AP L G+ Q L R P P A+ +P T P A V+ PP
Sbjct: 796 PGAPGLPGI------QGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGASVSGPP 846
Score = 35.0 bits (79), Expect = 0.24
Identities = 42/153 (27%), Positives = 57/153 (37%), Gaps = 47/153 (30%)
Query: 390 EAGSEALRGSSAP-HPLVPGAVGAEGVRGLWEQ-------------EVGSKALRGSPAHS 435
E G E + P P +PG G G++G+ + E G+ L G
Sbjct: 749 EQGPEGVGRPGKPGQPGLPGVQGPPGLKGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLP 808
Query: 436 SPALHPGVPGSVGA--GEGVKGSQRHGDSTTSLIISYALVTIMDFPI-PQGLALTTHPGW 492
P PG G GA GVKG+ P+ P G +++ PG
Sbjct: 809 GPRGPPGPTGEKGAQGSPGVKGATG--------------------PVGPPGASVSGPPG- 847
Query: 493 HSEAGGRRDGGAGQVVQGLRGPHGRRGPQVQAG 525
RDG GQ GLRG G +GP+ + G
Sbjct: 848 -------RDGQQGQT--GLRGTPGEKGPRGEKG 871
Score = 33.1 bits (74), Expect = 0.89
Identities = 29/95 (30%), Positives = 35/95 (36%), Gaps = 4/95 (4%)
Query: 411 GAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPG--SVGAGEGVKGSQRHGDSTTSLII 468
G G GLW +G P P PGVPG V G+ G SL I
Sbjct: 888 GMPGAPGLWMGSSWQPGPQGPPGIPGPPGPPGVPGLQGVPGNNGLPGQPGLTAELGSLPI 947
Query: 469 SYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGG 503
L+ + QG HPG+ E G + D G
Sbjct: 948 EQHLLKSICGDCVQG--QRAHPGYLVEKGEKGDQG 980
Score = 30.0 bits (66), Expect = 7.6
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAGEGVKGSQ 457
PG VG EG+ G E G L G P P G PG G G KG +
Sbjct: 437 PGFVGPEGLAG----EPGPPGLPGPPGIGLP----GTPGDPGGPPGPKGDK 479
>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
Length = 717
Score = 46.2 bits (108), Expect = 1e-04
Identities = 59/181 (32%), Positives = 66/181 (36%), Gaps = 29/181 (16%)
Query: 392 GSEALRGSSAPH--PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
G L G P P +PG G G+ G + G K RG P P G PG G
Sbjct: 464 GPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHD-GEKGPRGKPGDMGPPGPQGPPGKDGP 522
Query: 450 GEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTT----HPGWHSEAGGRRDGGAG 505
GVKG H S P +G T PG EAG + G G
Sbjct: 523 -PGVKGENGHPGS----------------PGEKGEKGETGQAGSPGEKGEAGEK--GNPG 563
Query: 506 QVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG--GAVGARG 563
V GL GP G GP G + A L GA + QG G LG GA G G
Sbjct: 564 AEVPGLPGPEGPPGPPGLQGVPGPKGEAGLD-GAKGEKGFQGEKGDRGPLGLPGASGLDG 622
Query: 564 R 564
R
Sbjct: 623 R 623
Score = 30.8 bits (68), Expect = 4.4
Identities = 33/128 (25%), Positives = 47/128 (36%), Gaps = 36/128 (28%)
Query: 430 GSPAHSSPALHPGVPGSVGAGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTH 489
G P S P HPG+PG +G G+ G P P+G
Sbjct: 276 GPPGPSGPLGHPGLPGPMGP-PGLPGP----------------------PGPKG-----D 307
Query: 490 PGWHSEAGGRRDGGAGQVVQGLRGPHGRRG-PQVQAGWQAGRQAAALGRGAALRRAAQGA 548
PG G + + G + G+ G HG +G P + G +G + A+G+
Sbjct: 308 PGIQGYHGRKGERG----MPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKG---EKGAEGS 360
Query: 549 GSASGLLG 556
GLLG
Sbjct: 361 PGLPGLLG 368
Score = 30.4 bits (67), Expect = 5.8
Identities = 52/197 (26%), Positives = 73/197 (37%), Gaps = 28/197 (14%)
Query: 397 RGSSAPHPLVPGAVGAEGVRGLWEQ-----EVGSKALRGSPAHSSPALHPGVPGSVGAGE 451
RG P P +PG G +G G+ Q + G K RG+ P G G G GE
Sbjct: 384 RGEPGP-PGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGE 442
Query: 452 GVKGSQRHGDSTTSLIISYALVTIMDFPIPQG-------------LALTTHPGWHSEAGG 498
V + ++ I + AL+ P G + L PG E G
Sbjct: 443 MVDYNGNINEALQE-IRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGP 501
Query: 499 R-RDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLGG 557
R + G G G +GP G+ GP G + G + +G + G + G G
Sbjct: 502 RGKPGDMGP--PGPQGPPGKDGPPGVKG-ENGHPGSPGEKG---EKGETGQAGSPGEKGE 555
Query: 558 AVGARGRRRAHKPVVVG 574
A G +G A P + G
Sbjct: 556 A-GEKGNPGAEVPGLPG 571
Score = 29.6 bits (65), Expect = 9.9
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAGE 451
G+ L G P P PG +G G G G + +G P + P G+PG G
Sbjct: 616 GASGLDGRPGP-PGTPGPIGVPGPAG----PKGERGSKGDPGMTGPTGAAGLPGLHGP-P 669
Query: 452 GVKGSQ 457
G KG++
Sbjct: 670 GDKGNR 675
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 46.2 bits (108), Expect = 1e-04
Identities = 59/181 (32%), Positives = 66/181 (36%), Gaps = 29/181 (16%)
Query: 392 GSEALRGSSAPH--PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
G L G P P +PG G G+ G + G K RG P P G PG G
Sbjct: 402 GPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHD-GEKGPRGKPGDMGPPGPQGPPGKDGP 460
Query: 450 GEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTT----HPGWHSEAGGRRDGGAG 505
GVKG H S P +G T PG EAG + G G
Sbjct: 461 -PGVKGENGHPGS----------------PGEKGEKGETGQAGSPGEKGEAGEK--GNPG 501
Query: 506 QVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG--GAVGARG 563
V GL GP G GP G + A L GA + QG G LG GA G G
Sbjct: 502 AEVPGLPGPEGPPGPPGLQGVPGPKGEAGLD-GAKGEKGFQGEKGDRGPLGLPGASGLDG 560
Query: 564 R 564
R
Sbjct: 561 R 561
Score = 30.8 bits (68), Expect = 4.4
Identities = 33/128 (25%), Positives = 47/128 (36%), Gaps = 36/128 (28%)
Query: 430 GSPAHSSPALHPGVPGSVGAGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTH 489
G P S P HPG+PG +G G+ G P P+G
Sbjct: 214 GPPGPSGPLGHPGLPGPMGP-PGLPGP----------------------PGPKG-----D 245
Query: 490 PGWHSEAGGRRDGGAGQVVQGLRGPHGRRG-PQVQAGWQAGRQAAALGRGAALRRAAQGA 548
PG G + + G + G+ G HG +G P + G +G + A+G+
Sbjct: 246 PGIQGYHGRKGERG----MPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKG---EKGAEGS 298
Query: 549 GSASGLLG 556
GLLG
Sbjct: 299 PGLPGLLG 306
Score = 30.4 bits (67), Expect = 5.8
Identities = 52/197 (26%), Positives = 73/197 (37%), Gaps = 28/197 (14%)
Query: 397 RGSSAPHPLVPGAVGAEGVRGLWEQ-----EVGSKALRGSPAHSSPALHPGVPGSVGAGE 451
RG P P +PG G +G G+ Q + G K RG+ P G G G GE
Sbjct: 322 RGEPGP-PGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGE 380
Query: 452 GVKGSQRHGDSTTSLIISYALVTIMDFPIPQG-------------LALTTHPGWHSEAGG 498
V + ++ I + AL+ P G + L PG E G
Sbjct: 381 MVDYNGNINEALQE-IRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGP 439
Query: 499 R-RDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLGG 557
R + G G G +GP G+ GP G + G + +G + G + G G
Sbjct: 440 RGKPGDMGP--PGPQGPPGKDGPPGVKG-ENGHPGSPGEKG---EKGETGQAGSPGEKGE 493
Query: 558 AVGARGRRRAHKPVVVG 574
A G +G A P + G
Sbjct: 494 A-GEKGNPGAEVPGLPG 509
Score = 29.6 bits (65), Expect = 9.9
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAGE 451
G+ L G P P PG +G G G G + +G P + P G+PG G
Sbjct: 554 GASGLDGRPGP-PGTPGPIGVPGPAG----PKGERGSKGDPGMTGPTGAAGLPGLHGP-P 607
Query: 452 GVKGSQ 457
G KG++
Sbjct: 608 GDKGNR 613
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 46.2 bits (108), Expect = 1e-04
Identities = 59/181 (32%), Positives = 66/181 (36%), Gaps = 29/181 (16%)
Query: 392 GSEALRGSSAPH--PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
G L G P P +PG G G+ G + G K RG P P G PG G
Sbjct: 404 GPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHD-GEKGPRGKPGDMGPPGPQGPPGKDGP 462
Query: 450 GEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTT----HPGWHSEAGGRRDGGAG 505
GVKG H S P +G T PG EAG + G G
Sbjct: 463 -PGVKGENGHPGS----------------PGEKGEKGETGQAGSPGEKGEAGEK--GNPG 503
Query: 506 QVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG--GAVGARG 563
V GL GP G GP G + A L GA + QG G LG GA G G
Sbjct: 504 AEVPGLPGPEGPPGPPGLQGVPGPKGEAGLD-GAKGEKGFQGEKGDRGPLGLPGASGLDG 562
Query: 564 R 564
R
Sbjct: 563 R 563
Score = 30.8 bits (68), Expect = 4.4
Identities = 33/128 (25%), Positives = 47/128 (36%), Gaps = 36/128 (28%)
Query: 430 GSPAHSSPALHPGVPGSVGAGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTH 489
G P S P HPG+PG +G G+ G P P+G
Sbjct: 216 GPPGPSGPLGHPGLPGPMGP-PGLPGP----------------------PGPKG-----D 247
Query: 490 PGWHSEAGGRRDGGAGQVVQGLRGPHGRRG-PQVQAGWQAGRQAAALGRGAALRRAAQGA 548
PG G + + G + G+ G HG +G P + G +G + A+G+
Sbjct: 248 PGIQGYHGRKGERG----MPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKG---EKGAEGS 300
Query: 549 GSASGLLG 556
GLLG
Sbjct: 301 PGLPGLLG 308
Score = 30.4 bits (67), Expect = 5.8
Identities = 52/197 (26%), Positives = 73/197 (37%), Gaps = 28/197 (14%)
Query: 397 RGSSAPHPLVPGAVGAEGVRGLWEQ-----EVGSKALRGSPAHSSPALHPGVPGSVGAGE 451
RG P P +PG G +G G+ Q + G K RG+ P G G G GE
Sbjct: 324 RGEPGP-PGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGE 382
Query: 452 GVKGSQRHGDSTTSLIISYALVTIMDFPIPQG-------------LALTTHPGWHSEAGG 498
V + ++ I + AL+ P G + L PG E G
Sbjct: 383 MVDYNGNINEALQE-IRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGP 441
Query: 499 R-RDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLGG 557
R + G G G +GP G+ GP G + G + +G + G + G G
Sbjct: 442 RGKPGDMGP--PGPQGPPGKDGPPGVKG-ENGHPGSPGEKG---EKGETGQAGSPGEKGE 495
Query: 558 AVGARGRRRAHKPVVVG 574
A G +G A P + G
Sbjct: 496 A-GEKGNPGAEVPGLPG 511
Score = 29.6 bits (65), Expect = 9.9
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAGE 451
G+ L G P P PG +G G G G + +G P + P G+PG G
Sbjct: 556 GASGLDGRPGP-PGTPGPIGVPGPAG----PKGERGSKGDPGMTGPTGAAGLPGLHGP-P 609
Query: 452 GVKGSQ 457
G KG++
Sbjct: 610 GDKGNR 615
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 46.2 bits (108), Expect = 1e-04
Identities = 59/181 (32%), Positives = 66/181 (36%), Gaps = 29/181 (16%)
Query: 392 GSEALRGSSAPH--PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
G L G P P +PG G G+ G + G K RG P P G PG G
Sbjct: 407 GPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHD-GEKGPRGKPGDMGPPGPQGPPGKDGP 465
Query: 450 GEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTT----HPGWHSEAGGRRDGGAG 505
GVKG H S P +G T PG EAG + G G
Sbjct: 466 -PGVKGENGHPGS----------------PGEKGEKGETGQAGSPGEKGEAGEK--GNPG 506
Query: 506 QVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG--GAVGARG 563
V GL GP G GP G + A L GA + QG G LG GA G G
Sbjct: 507 AEVPGLPGPEGPPGPPGLQGVPGPKGEAGLD-GAKGEKGFQGEKGDRGPLGLPGASGLDG 565
Query: 564 R 564
R
Sbjct: 566 R 566
Score = 30.8 bits (68), Expect = 4.4
Identities = 33/128 (25%), Positives = 47/128 (36%), Gaps = 36/128 (28%)
Query: 430 GSPAHSSPALHPGVPGSVGAGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTH 489
G P S P HPG+PG +G G+ G P P+G
Sbjct: 219 GPPGPSGPLGHPGLPGPMGP-PGLPGP----------------------PGPKG-----D 250
Query: 490 PGWHSEAGGRRDGGAGQVVQGLRGPHGRRG-PQVQAGWQAGRQAAALGRGAALRRAAQGA 548
PG G + + G + G+ G HG +G P + G +G + A+G+
Sbjct: 251 PGIQGYHGRKGERG----MPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKG---EKGAEGS 303
Query: 549 GSASGLLG 556
GLLG
Sbjct: 304 PGLPGLLG 311
Score = 30.4 bits (67), Expect = 5.8
Identities = 52/197 (26%), Positives = 73/197 (37%), Gaps = 28/197 (14%)
Query: 397 RGSSAPHPLVPGAVGAEGVRGLWEQ-----EVGSKALRGSPAHSSPALHPGVPGSVGAGE 451
RG P P +PG G +G G+ Q + G K RG+ P G G G GE
Sbjct: 327 RGEPGP-PGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGE 385
Query: 452 GVKGSQRHGDSTTSLIISYALVTIMDFPIPQG-------------LALTTHPGWHSEAGG 498
V + ++ I + AL+ P G + L PG E G
Sbjct: 386 MVDYNGNINEALQE-IRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGP 444
Query: 499 R-RDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLGG 557
R + G G G +GP G+ GP G + G + +G + G + G G
Sbjct: 445 RGKPGDMGP--PGPQGPPGKDGPPGVKG-ENGHPGSPGEKG---EKGETGQAGSPGEKGE 498
Query: 558 AVGARGRRRAHKPVVVG 574
A G +G A P + G
Sbjct: 499 A-GEKGNPGAEVPGLPG 514
Score = 29.6 bits (65), Expect = 9.9
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAGE 451
G+ L G P P PG +G G G G + +G P + P G+PG G
Sbjct: 559 GASGLDGRPGP-PGTPGPIGVPGPAG----PKGERGSKGDPGMTGPTGAAGLPGLHGP-P 612
Query: 452 GVKGSQ 457
G KG++
Sbjct: 613 GDKGNR 618
>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
Length = 664
Score = 46.2 bits (108), Expect = 1e-04
Identities = 59/181 (32%), Positives = 66/181 (36%), Gaps = 29/181 (16%)
Query: 392 GSEALRGSSAPH--PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
G L G P P +PG G G+ G + G K RG P P G PG G
Sbjct: 411 GPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHD-GEKGPRGKPGDMGPPGPQGPPGKDGP 469
Query: 450 GEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTT----HPGWHSEAGGRRDGGAG 505
GVKG H S P +G T PG EAG + G G
Sbjct: 470 -PGVKGENGHPGS----------------PGEKGEKGETGQAGSPGEKGEAGEK--GNPG 510
Query: 506 QVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG--GAVGARG 563
V GL GP G GP G + A L GA + QG G LG GA G G
Sbjct: 511 AEVPGLPGPEGPPGPPGLQGVPGPKGEAGLD-GAKGEKGFQGEKGDRGPLGLPGASGLDG 569
Query: 564 R 564
R
Sbjct: 570 R 570
Score = 33.9 bits (76), Expect = 0.52
Identities = 72/275 (26%), Positives = 96/275 (34%), Gaps = 52/275 (18%)
Query: 432 PAHSSPALHPGVPGSVG-AGEGVKGSQRH-GDSTTSLIISYALVTIMDFPIPQGL-ALTT 488
PA P PG+PGS G AG + G + G T FP P GL
Sbjct: 121 PAFQGPTGRPGLPGSPGDAGLSIIGPRGPPGQPGTR--------GFPGFPGPIGLDGKPG 172
Query: 489 HPGWHSEAGGRRDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGA 548
HPG + GL GP G+ GPQ Q G + G+ RG + + QG
Sbjct: 173 HPGPKGD-------------MGLTGPPGQPGPQGQKG-EKGQCGEYPHRGEQSQASIQGP 218
Query: 549 GSASGLLGGAVGARGRRRAHKPVVVGERLRGRGARVRTWRRG-GGRVAQRGQLAHVLRRQ 607
G G + G G P+ G + +G GR +RG +
Sbjct: 219 PGPPGPPGPS-GPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHG 277
Query: 608 VEG----AAAGL--TPHVPPVLGAAPQQPVALIRPDGHAAPVLAGVL-----EGVLHQHL 656
+G A AG+ P +P G +P L G+L +G +
Sbjct: 278 AKGAPGIAVAGMKGEPGIPGTKG----------EKGAEGSPGLPGLLGQKGEKGDAGNSI 327
Query: 657 HHRRREPE----PGPPSPARTAPCSPALTPPPEKG 687
R EP PGPP P A + PP + G
Sbjct: 328 GGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPG 362
Score = 30.8 bits (68), Expect = 4.4
Identities = 33/128 (25%), Positives = 47/128 (36%), Gaps = 36/128 (28%)
Query: 430 GSPAHSSPALHPGVPGSVGAGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTH 489
G P S P HPG+PG +G G+ G P P+G
Sbjct: 223 GPPGPSGPLGHPGLPGPMGP-PGLPGP----------------------PGPKG-----D 254
Query: 490 PGWHSEAGGRRDGGAGQVVQGLRGPHGRRG-PQVQAGWQAGRQAAALGRGAALRRAAQGA 548
PG G + + G + G+ G HG +G P + G +G + A+G+
Sbjct: 255 PGIQGYHGRKGERG----MPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKG---EKGAEGS 307
Query: 549 GSASGLLG 556
GLLG
Sbjct: 308 PGLPGLLG 315
Score = 30.4 bits (67), Expect = 5.8
Identities = 52/197 (26%), Positives = 73/197 (37%), Gaps = 28/197 (14%)
Query: 397 RGSSAPHPLVPGAVGAEGVRGLWEQ-----EVGSKALRGSPAHSSPALHPGVPGSVGAGE 451
RG P P +PG G +G G+ Q + G K RG+ P G G G GE
Sbjct: 331 RGEPGP-PGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGE 389
Query: 452 GVKGSQRHGDSTTSLIISYALVTIMDFPIPQG-------------LALTTHPGWHSEAGG 498
V + ++ I + AL+ P G + L PG E G
Sbjct: 390 MVDYNGNINEALQE-IRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGP 448
Query: 499 R-RDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLGG 557
R + G G G +GP G+ GP G + G + +G + G + G G
Sbjct: 449 RGKPGDMGP--PGPQGPPGKDGPPGVKG-ENGHPGSPGEKG---EKGETGQAGSPGEKGE 502
Query: 558 AVGARGRRRAHKPVVVG 574
A G +G A P + G
Sbjct: 503 A-GEKGNPGAEVPGLPG 518
Score = 29.6 bits (65), Expect = 9.9
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAGE 451
G+ L G P P PG +G G G G + +G P + P G+PG G
Sbjct: 563 GASGLDGRPGP-PGTPGPIGVPGPAG----PKGERGSKGDPGMTGPTGAAGLPGLHGP-P 616
Query: 452 GVKGSQ 457
G KG++
Sbjct: 617 GDKGNR 622
>gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]
Length = 676
Score = 46.2 bits (108), Expect = 1e-04
Identities = 59/181 (32%), Positives = 66/181 (36%), Gaps = 29/181 (16%)
Query: 392 GSEALRGSSAPH--PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
G L G P P +PG G G+ G + G K RG P P G PG G
Sbjct: 423 GPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHD-GEKGPRGKPGDMGPPGPQGPPGKDGP 481
Query: 450 GEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTT----HPGWHSEAGGRRDGGAG 505
GVKG H S P +G T PG EAG + G G
Sbjct: 482 -PGVKGENGHPGS----------------PGEKGEKGETGQAGSPGEKGEAGEK--GNPG 522
Query: 506 QVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG--GAVGARG 563
V GL GP G GP G + A L GA + QG G LG GA G G
Sbjct: 523 AEVPGLPGPEGPPGPPGLQGVPGPKGEAGLD-GAKGEKGFQGEKGDRGPLGLPGASGLDG 581
Query: 564 R 564
R
Sbjct: 582 R 582
Score = 33.5 bits (75), Expect = 0.68
Identities = 74/281 (26%), Positives = 98/281 (34%), Gaps = 52/281 (18%)
Query: 432 PAHSSPALHPGVPGSVGA--GEGVKGSQRHGDSTTSLIISYA------LVTIMDFPIPQG 483
PA P PG+PG GA G GS GD+ S+I FP P G
Sbjct: 121 PAFQGPTGRPGLPGDKGAIGMPGRVGSP--GDAGLSIIGPRGPPGQPGTRGFPGFPGPIG 178
Query: 484 L-ALTTHPGWHSEAGGRRDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALR 542
L HPG + GL GP G+ GPQ Q G + G+ RG +
Sbjct: 179 LDGKPGHPGPKGD-------------MGLTGPPGQPGPQGQKG-EKGQCGEYPHRGEQSQ 224
Query: 543 RAAQGAGSASGLLGGAVGARGRRRAHKPVVVGERLRGRGARVRTWRRG-GGRVAQRGQLA 601
+ QG G G + G G P+ G + +G GR +RG
Sbjct: 225 ASIQGPPGPPGPPGPS-GPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPG 283
Query: 602 HVLRRQVEG----AAAGL--TPHVPPVLGAAPQQPVALIRPDGHAAPVLAGVL-----EG 650
+ +G A AG+ P +P G +P L G+L +G
Sbjct: 284 MPGKHGAKGAPGIAVAGMKGEPGIPGTKG----------EKGAEGSPGLPGLLGQKGEKG 333
Query: 651 VLHQHLHHRRREPE----PGPPSPARTAPCSPALTPPPEKG 687
+ R EP PGPP P A + PP + G
Sbjct: 334 DAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPG 374
Score = 30.8 bits (68), Expect = 4.4
Identities = 33/128 (25%), Positives = 47/128 (36%), Gaps = 36/128 (28%)
Query: 430 GSPAHSSPALHPGVPGSVGAGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTH 489
G P S P HPG+PG +G G+ G P P+G
Sbjct: 235 GPPGPSGPLGHPGLPGPMGP-PGLPGP----------------------PGPKG-----D 266
Query: 490 PGWHSEAGGRRDGGAGQVVQGLRGPHGRRG-PQVQAGWQAGRQAAALGRGAALRRAAQGA 548
PG G + + G + G+ G HG +G P + G +G + A+G+
Sbjct: 267 PGIQGYHGRKGERG----MPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKG---EKGAEGS 319
Query: 549 GSASGLLG 556
GLLG
Sbjct: 320 PGLPGLLG 327
Score = 30.4 bits (67), Expect = 5.8
Identities = 52/197 (26%), Positives = 73/197 (37%), Gaps = 28/197 (14%)
Query: 397 RGSSAPHPLVPGAVGAEGVRGLWEQ-----EVGSKALRGSPAHSSPALHPGVPGSVGAGE 451
RG P P +PG G +G G+ Q + G K RG+ P G G G GE
Sbjct: 343 RGEPGP-PGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGE 401
Query: 452 GVKGSQRHGDSTTSLIISYALVTIMDFPIPQG-------------LALTTHPGWHSEAGG 498
V + ++ I + AL+ P G + L PG E G
Sbjct: 402 MVDYNGNINEALQE-IRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGP 460
Query: 499 R-RDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLGG 557
R + G G G +GP G+ GP G + G + +G + G + G G
Sbjct: 461 RGKPGDMGP--PGPQGPPGKDGPPGVKG-ENGHPGSPGEKG---EKGETGQAGSPGEKGE 514
Query: 558 AVGARGRRRAHKPVVVG 574
A G +G A P + G
Sbjct: 515 A-GEKGNPGAEVPGLPG 530
Score = 29.6 bits (65), Expect = 9.9
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAGE 451
G+ L G P P PG +G G G G + +G P + P G+PG G
Sbjct: 575 GASGLDGRPGP-PGTPGPIGVPGPAG----PKGERGSKGDPGMTGPTGAAGLPGLHGP-P 628
Query: 452 GVKGSQ 457
G KG++
Sbjct: 629 GDKGNR 634
>gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens]
Length = 688
Score = 46.2 bits (108), Expect = 1e-04
Identities = 59/181 (32%), Positives = 66/181 (36%), Gaps = 29/181 (16%)
Query: 392 GSEALRGSSAPH--PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
G L G P P +PG G G+ G + G K RG P P G PG G
Sbjct: 435 GPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHD-GEKGPRGKPGDMGPPGPQGPPGKDGP 493
Query: 450 GEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTT----HPGWHSEAGGRRDGGAG 505
GVKG H S P +G T PG EAG + G G
Sbjct: 494 -PGVKGENGHPGS----------------PGEKGEKGETGQAGSPGEKGEAGEK--GNPG 534
Query: 506 QVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG--GAVGARG 563
V GL GP G GP G + A L GA + QG G LG GA G G
Sbjct: 535 AEVPGLPGPEGPPGPPGLQGVPGPKGEAGLD-GAKGEKGFQGEKGDRGPLGLPGASGLDG 593
Query: 564 R 564
R
Sbjct: 594 R 594
Score = 30.8 bits (68), Expect = 4.4
Identities = 33/128 (25%), Positives = 47/128 (36%), Gaps = 36/128 (28%)
Query: 430 GSPAHSSPALHPGVPGSVGAGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTH 489
G P S P HPG+PG +G G+ G P P+G
Sbjct: 247 GPPGPSGPLGHPGLPGPMGP-PGLPGP----------------------PGPKG-----D 278
Query: 490 PGWHSEAGGRRDGGAGQVVQGLRGPHGRRG-PQVQAGWQAGRQAAALGRGAALRRAAQGA 548
PG G + + G + G+ G HG +G P + G +G + A+G+
Sbjct: 279 PGIQGYHGRKGERG----MPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKG---EKGAEGS 331
Query: 549 GSASGLLG 556
GLLG
Sbjct: 332 PGLPGLLG 339
Score = 30.4 bits (67), Expect = 5.8
Identities = 52/197 (26%), Positives = 73/197 (37%), Gaps = 28/197 (14%)
Query: 397 RGSSAPHPLVPGAVGAEGVRGLWEQ-----EVGSKALRGSPAHSSPALHPGVPGSVGAGE 451
RG P P +PG G +G G+ Q + G K RG+ P G G G GE
Sbjct: 355 RGEPGP-PGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGE 413
Query: 452 GVKGSQRHGDSTTSLIISYALVTIMDFPIPQG-------------LALTTHPGWHSEAGG 498
V + ++ I + AL+ P G + L PG E G
Sbjct: 414 MVDYNGNINEALQE-IRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGP 472
Query: 499 R-RDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLGG 557
R + G G G +GP G+ GP G + G + +G + G + G G
Sbjct: 473 RGKPGDMGP--PGPQGPPGKDGPPGVKG-ENGHPGSPGEKG---EKGETGQAGSPGEKGE 526
Query: 558 AVGARGRRRAHKPVVVG 574
A G +G A P + G
Sbjct: 527 A-GEKGNPGAEVPGLPG 542
Score = 29.6 bits (65), Expect = 9.9
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAGE 451
G+ L G P P PG +G G G G + +G P + P G+PG G
Sbjct: 587 GASGLDGRPGP-PGTPGPIGVPGPAG----PKGERGSKGDPGMTGPTGAAGLPGLHGP-P 640
Query: 452 GVKGSQ 457
G KG++
Sbjct: 641 GDKGNR 646
>gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens]
Length = 695
Score = 46.2 bits (108), Expect = 1e-04
Identities = 59/181 (32%), Positives = 66/181 (36%), Gaps = 29/181 (16%)
Query: 392 GSEALRGSSAPH--PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGA 449
G L G P P +PG G G+ G + G K RG P P G PG G
Sbjct: 442 GPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHD-GEKGPRGKPGDMGPPGPQGPPGKDGP 500
Query: 450 GEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTT----HPGWHSEAGGRRDGGAG 505
GVKG H S P +G T PG EAG + G G
Sbjct: 501 -PGVKGENGHPGS----------------PGEKGEKGETGQAGSPGEKGEAGEK--GNPG 541
Query: 506 QVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLG--GAVGARG 563
V GL GP G GP G + A L GA + QG G LG GA G G
Sbjct: 542 AEVPGLPGPEGPPGPPGLQGVPGPKGEAGLD-GAKGEKGFQGEKGDRGPLGLPGASGLDG 600
Query: 564 R 564
R
Sbjct: 601 R 601
Score = 30.8 bits (68), Expect = 4.4
Identities = 33/128 (25%), Positives = 47/128 (36%), Gaps = 36/128 (28%)
Query: 430 GSPAHSSPALHPGVPGSVGAGEGVKGSQRHGDSTTSLIISYALVTIMDFPIPQGLALTTH 489
G P S P HPG+PG +G G+ G P P+G
Sbjct: 254 GPPGPSGPLGHPGLPGPMGP-PGLPGP----------------------PGPKG-----D 285
Query: 490 PGWHSEAGGRRDGGAGQVVQGLRGPHGRRG-PQVQAGWQAGRQAAALGRGAALRRAAQGA 548
PG G + + G + G+ G HG +G P + G +G + A+G+
Sbjct: 286 PGIQGYHGRKGERG----MPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKG---EKGAEGS 338
Query: 549 GSASGLLG 556
GLLG
Sbjct: 339 PGLPGLLG 346
Score = 30.4 bits (67), Expect = 5.8
Identities = 52/197 (26%), Positives = 73/197 (37%), Gaps = 28/197 (14%)
Query: 397 RGSSAPHPLVPGAVGAEGVRGLWEQ-----EVGSKALRGSPAHSSPALHPGVPGSVGAGE 451
RG P P +PG G +G G+ Q + G K RG+ P G G G GE
Sbjct: 362 RGEPGP-PGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGE 420
Query: 452 GVKGSQRHGDSTTSLIISYALVTIMDFPIPQG-------------LALTTHPGWHSEAGG 498
V + ++ I + AL+ P G + L PG E G
Sbjct: 421 MVDYNGNINEALQE-IRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGP 479
Query: 499 R-RDGGAGQVVQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLGG 557
R + G G G +GP G+ GP G + G + +G + G + G G
Sbjct: 480 RGKPGDMGP--PGPQGPPGKDGPPGVKG-ENGHPGSPGEKG---EKGETGQAGSPGEKGE 533
Query: 558 AVGARGRRRAHKPVVVG 574
A G +G A P + G
Sbjct: 534 A-GEKGNPGAEVPGLPG 549
Score = 29.6 bits (65), Expect = 9.9
Identities = 34/103 (33%), Positives = 39/103 (37%), Gaps = 24/103 (23%)
Query: 432 PAHSSPALHPGVPGSVGA--GEGVKGSQRHGDSTTSLIISYA------LVTIMDFPIPQG 483
PA P PG+PG GA G GS GD+ S+I FP P G
Sbjct: 121 PAFQGPTGRPGLPGDKGAIGMPGRVGSP--GDAGLSIIGPRGPPGQPGTRGFPGFPGPIG 178
Query: 484 L-ALTTHPGWHSEAGGRRDGGAGQVVQGLRGPHGRRGPQVQAG 525
L HPG + GL GP G+ GPQ Q G
Sbjct: 179 LDGKPGHPGPKGD-------------MGLTGPPGQPGPQGQKG 208
Score = 29.6 bits (65), Expect = 9.9
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGSVGAGE 451
G+ L G P P PG +G G G G + +G P + P G+PG G
Sbjct: 594 GASGLDGRPGP-PGTPGPIGVPGPAG----PKGERGSKGDPGMTGPTGAAGLPGLHGP-P 647
Query: 452 GVKGSQ 457
G KG++
Sbjct: 648 GDKGNR 653
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,950,880
Number of Sequences: 37866
Number of extensions: 2111537
Number of successful extensions: 20818
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 675
Number of HSP's that attempted gapping in prelim test: 15457
Number of HSP's gapped (non-prelim): 4891
length of query: 697
length of database: 18,247,518
effective HSP length: 109
effective length of query: 588
effective length of database: 14,120,124
effective search space: 8302632912
effective search space used: 8302632912
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.