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Search of human proteins with 23503255
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23503255 sorting nexin 20 isoform 2 [Homo sapiens]
(129 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23503255 sorting nexin 20 isoform 2 [Homo sapiens] 278 9e-76
gi|33504571 sorting nexin 20 isoform 1 [Homo sapiens] 203 3e-53
gi|222352102 sorting nexin 20 isoform 3 [Homo sapiens] 203 3e-53
gi|15553099 sorting nexin 21 isoform a [Homo sapiens] 34 0.028
gi|23510350 sorting nexin 21 isoform b [Homo sapiens] 34 0.028
gi|111118961 sorting nexin 21 isoform d [Homo sapiens] 34 0.037
gi|19924099 synapsin I isoform Ia [Homo sapiens] 33 0.081
gi|19924097 synapsin I isoform Ib [Homo sapiens] 33 0.081
gi|84105335 mesenchyme homeobox 2 [Homo sapiens] 31 0.24
gi|223633935 hypothetical protein LOC254427 [Homo sapiens] 30 0.40
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 30 0.40
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 30 0.40
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 30 0.40
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 30 0.40
gi|151301137 AT-hook transcription factor [Homo sapiens] 30 0.40
gi|12707580 paired-like homeobox 2b [Homo sapiens] 30 0.53
gi|71043876 undifferentiated embryonic cell transcription factor... 30 0.53
gi|154759259 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ... 30 0.69
gi|194595509 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ... 30 0.69
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 30 0.69
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 30 0.69
gi|111118959 sorting nexin 21 isoform c [Homo sapiens] 30 0.69
gi|239757960 PREDICTED: hypothetical protein [Homo sapiens] 29 0.90
gi|239753324 PREDICTED: hypothetical protein [Homo sapiens] 29 0.90
gi|169218002 PREDICTED: hypothetical protein [Homo sapiens] 29 0.90
gi|169163057 PREDICTED: hypothetical protein [Homo sapiens] 29 0.90
gi|55956910 meningioma 1 [Homo sapiens] 29 0.90
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 29 0.90
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 29 0.90
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom... 29 0.90
>gi|23503255 sorting nexin 20 isoform 2 [Homo sapiens]
Length = 129
Score = 278 bits (711), Expect = 9e-76
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL 60
MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL
Sbjct: 1 MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL 60
Query: 61 QQYWQNQKCRWKHVKLLFEIASARIEERKVSKFVMGKSRPGEMTYPGSRGETGTAPEPDP 120
QQYWQNQKCRWKHVKLLFEIASARIEERKVSKFVMGKSRPGEMTYPGSRGETGTAPEPDP
Sbjct: 61 QQYWQNQKCRWKHVKLLFEIASARIEERKVSKFVMGKSRPGEMTYPGSRGETGTAPEPDP 120
Query: 121 RCPRQSDML 129
RCPRQSDML
Sbjct: 121 RCPRQSDML 129
>gi|33504571 sorting nexin 20 isoform 1 [Homo sapiens]
Length = 316
Score = 203 bits (517), Expect = 3e-53
Identities = 94/95 (98%), Positives = 95/95 (100%)
Query: 1 MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL 60
MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL
Sbjct: 1 MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL 60
Query: 61 QQYWQNQKCRWKHVKLLFEIASARIEERKVSKFVM 95
QQYWQNQKCRWKHVKLLFEIASARIEERKVSKFV+
Sbjct: 61 QQYWQNQKCRWKHVKLLFEIASARIEERKVSKFVV 95
>gi|222352102 sorting nexin 20 isoform 3 [Homo sapiens]
Length = 102
Score = 203 bits (516), Expect = 3e-53
Identities = 94/94 (100%), Positives = 94/94 (100%)
Query: 1 MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL 60
MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL
Sbjct: 1 MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL 60
Query: 61 QQYWQNQKCRWKHVKLLFEIASARIEERKVSKFV 94
QQYWQNQKCRWKHVKLLFEIASARIEERKVSKFV
Sbjct: 61 QQYWQNQKCRWKHVKLLFEIASARIEERKVSKFV 94
>gi|15553099 sorting nexin 21 isoform a [Homo sapiens]
Length = 373
Score = 34.3 bits (77), Expect = 0.028
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 37 PGPDGHLDTHSGLSSNSSMTTRELQQYWQNQKCRWKHVKLLFEIASARIEERKVSKFVM 95
P PDG S + R+LQ +W+ + +LLFE+ SA + + SK+V+
Sbjct: 100 PPPDGQW--------GSQLLARQLQDFWKKSRNTLAPQRLLFEVTSANVVKDPPSKYVL 150
>gi|23510350 sorting nexin 21 isoform b [Homo sapiens]
Length = 199
Score = 34.3 bits (77), Expect = 0.028
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 37 PGPDGHLDTHSGLSSNSSMTTRELQQYWQNQKCRWKHVKLLFEIASARIEERKVSKFVM 95
P PDG S + R+LQ +W+ + +LLFE+ SA + + SK+V+
Sbjct: 100 PPPDGQW--------GSQLLARQLQDFWKKSRNTLAPQRLLFEVTSANVVKDPPSKYVL 150
>gi|111118961 sorting nexin 21 isoform d [Homo sapiens]
Length = 158
Score = 33.9 bits (76), Expect = 0.037
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 37 PGPDGHLDTHSGLSSNSSMTTRELQQYWQNQKCRWKHVKLLFEIASARIEERKVSKFVMG 96
P PDG S + R+LQ +W+ + +LLFE+ SA + + SK+V
Sbjct: 100 PPPDGQW--------GSQLLARQLQDFWKKSRNTLAPQRLLFEVTSANVVKDPPSKYVTN 151
Query: 97 KS 98
S
Sbjct: 152 LS 153
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 32.7 bits (73), Expect = 0.081
Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 4 PEHPG--SPGCM-GPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTT 57
P PG SPG GP T R+ APA P P PG G S LS+ TT
Sbjct: 32 PPPPGAHSPGATPGPGTATAERSSGVAPAASPAAPSPGSSGGGGFFSSLSNAVKQTT 88
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 32.7 bits (73), Expect = 0.081
Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 4 PEHPG--SPGCM-GPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTT 57
P PG SPG GP T R+ APA P P PG G S LS+ TT
Sbjct: 32 PPPPGAHSPGATPGPGTATAERSSGVAPAASPAAPSPGSSGGGGFFSSLSNAVKQTT 88
>gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
Length = 304
Score = 31.2 bits (69), Expect = 0.24
Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 49 LSSNSSMTTRELQQYWQNQKCRWKHVKLLFEIASARIEERKVSKFVMGKSRPGEMTYPGS 108
++ N +T R+++ ++QN++ +WK VK + A+AR E+++ G P E++ G+
Sbjct: 220 IAVNLDLTERQVKVWFQNRRMKWKRVKGGQQGAAAR--EKELVNVKKGTLLPSELSGIGA 277
>gi|223633935 hypothetical protein LOC254427 [Homo sapiens]
Length = 435
Score = 30.4 bits (67), Expect = 0.40
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Query: 72 KHVKLLFEIASARIEERKVSKFVMG-----------KSRPGEMTYPGSRGETGTAPEPDP 120
+H +LL + + + +K+S+ + G + RPGE P +RG P P P
Sbjct: 183 EHPRLLRSVPTPLVMAQKISERMAGNEALSPTSPFREGRPGEWRTPAARGPRSGDPGPGP 242
Query: 121 RCPRQ 125
P Q
Sbjct: 243 SHPAQ 247
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 30.4 bits (67), Expect = 0.40
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 4 PEHPGSPGCMGPITQCTARTQQEAPATGPDLP-HPGPDG 41
P PG PG GP + + T P P P HPGP G
Sbjct: 633 PGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQG 671
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 30.4 bits (67), Expect = 0.40
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 4 PEHPGSPGCMGPITQCTARTQQEAPATGPDLP-HPGPDG 41
P PG PG GP + + T P P P HPGP G
Sbjct: 633 PGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQG 671
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 30.4 bits (67), Expect = 0.40
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 4 PEHPGSPGCMGPITQCTARTQQEAPATGPDLP-HPGPDG 41
P PG PG GP + + T P P P HPGP G
Sbjct: 633 PGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQG 671
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 30.4 bits (67), Expect = 0.40
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 4 PEHPGSPGCMGPITQCTARTQQEAPATGPDLP-HPGPDG 41
P PG PG GP + + T P P P HPGP G
Sbjct: 633 PGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQG 671
>gi|151301137 AT-hook transcription factor [Homo sapiens]
Length = 1439
Score = 30.4 bits (67), Expect = 0.40
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 24 QQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTREL 60
QQ P D PHP PDGH D+ SG +S ++
Sbjct: 63 QQHLPPLEWD-PHPQPDGHQDSESGETSGEEAEAEDV 98
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 30.0 bits (66), Expect = 0.53
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 45 THSGLSSNSSMTTRELQQYWQNQKCRWKHVKLLFEIASARIEE----RKVSKFVMGKSRP 100
T L+ +T +Q ++QN++ +++ + A+A + +K +S+
Sbjct: 127 TREELALKIDLTEARVQVWFQNRRAKFRKQERAAAAAAAAAKNGSSGKKSDSSRDDESKE 186
Query: 101 GEMTYPGSRGETGTAPEPDPRC 122
+ T P S G G P P P C
Sbjct: 187 AKSTDPDSTGGPGPNPNPTPSC 208
>gi|71043876 undifferentiated embryonic cell transcription factor 1
[Homo sapiens]
Length = 341
Score = 30.0 bits (66), Expect = 0.53
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 2 ASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGP 39
ASP PGSP P T + AP GP P P P
Sbjct: 214 ASPA-PGSPPAPAPTALATCIPEDRAPVRGPGSPPPPP 250
>gi|154759259 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)
isoform 2 [Homo sapiens]
Length = 2472
Score = 29.6 bits (65), Expect = 0.69
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 37 PGPDGHLDTHSGLSSNSSMTTRELQQYWQNQKCRWKHVKLLFEIASARIEE 87
P G LDT LS ++++ E+QQ WK +K L R+EE
Sbjct: 1818 PAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVEHWKELKQLAAARGQRLEE 1868
>gi|194595509 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)
isoform 1 [Homo sapiens]
Length = 2477
Score = 29.6 bits (65), Expect = 0.69
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 37 PGPDGHLDTHSGLSSNSSMTTRELQQYWQNQKCRWKHVKLLFEIASARIEE 87
P G LDT LS ++++ E+QQ WK +K L R+EE
Sbjct: 1823 PAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVEHWKELKQLAAARGQRLEE 1873
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 29.6 bits (65), Expect = 0.69
Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 14/124 (11%)
Query: 4 PEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTRELQQY 63
P PG G G + ++ +Q P PG ++D + + RE+ +
Sbjct: 1903 PGVPGGTGPKGDRGETGSKGEQGLPGERGLRGEPGSVPNVDRLLETAGIKASALREIVET 1962
Query: 64 WQNQKCRWKHVKLLFEIASARIEERKVSKFVMGKSRP----GEMTYPGSRGETGTAPEPD 119
W + V E R+ K G+ P G + +PG RG G +P
Sbjct: 1963 WDESSGSFLPVP----------ERRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPG 2012
Query: 120 PRCP 123
P+ P
Sbjct: 2013 PQGP 2016
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 29.6 bits (65), Expect = 0.69
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 7 PGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDG 41
P +P P + T R + +P GP P+PGPDG
Sbjct: 336 PATPELAEPESAPTLRVEPPSPPEGP--PNPGPDG 368
>gi|111118959 sorting nexin 21 isoform c [Homo sapiens]
Length = 152
Score = 29.6 bits (65), Expect = 0.69
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 37 PGPDGHLDTHSGLSSNSSMTTRELQQYWQNQKCRWKHVKLLFEIASARI 85
P PDG S + R+LQ +W+ + +LLFE+ SA +
Sbjct: 100 PPPDGQW--------GSQLLARQLQDFWKKSRNTLAPQRLLFEVTSANV 140
>gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]
Length = 292
Score = 29.3 bits (64), Expect = 0.90
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 4 PEH---PGSPGCMGPITQCTARTQQEAPATGPDLPHPGP 39
P+H PG P C P+ ++ PA P + PGP
Sbjct: 42 PDHAPPPGRPSCSRPLCAGSSCLATPEPARAPSIAEPGP 80
>gi|239753324 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 29.3 bits (64), Expect = 0.90
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 4 PEH---PGSPGCMGPITQCTARTQQEAPATGPDLPHPGP 39
P+H PG P C P+ ++ PA P + PGP
Sbjct: 62 PDHAPPPGRPSCSRPLCAGSSCLATPEPARSPSIAEPGP 100
>gi|169218002 PREDICTED: hypothetical protein [Homo sapiens]
Length = 218
Score = 29.3 bits (64), Expect = 0.90
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 4 PEH---PGSPGCMGPITQCTARTQQEAPATGPDLPHPGP 39
P+H PG P C P+ ++ PA P + PGP
Sbjct: 35 PDHAPPPGRPSCSRPLCAGSSCLATPEPARAPSIAEPGP 73
>gi|169163057 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 29.3 bits (64), Expect = 0.90
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 4 PEH---PGSPGCMGPITQCTARTQQEAPATGPDLPHPGP 39
P+H PG P C P+ ++ PA P + PGP
Sbjct: 62 PDHAPPPGRPSCSRPLCAGSSCLATPEPARAPSIAEPGP 100
>gi|55956910 meningioma 1 [Homo sapiens]
Length = 1320
Score = 29.3 bits (64), Expect = 0.90
Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 14/110 (12%)
Query: 6 HPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTRELQQYWQ 65
+PG PG P ++ +GP L HP PD H L ++ QQ Q
Sbjct: 491 YPGLPGEFTPPVP-------DSFPSGPPLQHPAPD-----HQSLQQQQQQQQQQQQQQQQ 538
Query: 66 NQKCRWKHVKLLFEIASARIEERKVSKFVMGKSRP--GEMTYPGSRGETG 113
Q+ + + + + A+ I++ +P ++ +PG G+ G
Sbjct: 539 QQQQQQQQQQQQRQNAALMIKQMASRNQQQRLRQPNLAQLGHPGDVGQGG 588
>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
sapiens]
Length = 828
Score = 29.3 bits (64), Expect = 0.90
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 99 RPGEMTYPGSRGETGTAPEPDPRCP 123
RPG +YPG RG G EP PR P
Sbjct: 512 RPG-FSYPGPRGAPGEKGEPGPRGP 535
>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
sapiens]
Length = 918
Score = 29.3 bits (64), Expect = 0.90
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 99 RPGEMTYPGSRGETGTAPEPDPRCP 123
RPG +YPG RG G EP PR P
Sbjct: 512 RPG-FSYPGPRGAPGEKGEPGPRGP 535
>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
sapiens]
Length = 1019
Score = 29.3 bits (64), Expect = 0.90
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 99 RPGEMTYPGSRGETGTAPEPDPRCP 123
RPG +YPG RG G EP PR P
Sbjct: 512 RPG-FSYPGPRGAPGEKGEPGPRGP 535
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.130 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,125,398
Number of Sequences: 37866
Number of extensions: 369226
Number of successful extensions: 2223
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 1708
Number of HSP's gapped (non-prelim): 619
length of query: 129
length of database: 18,247,518
effective HSP length: 90
effective length of query: 39
effective length of database: 14,839,578
effective search space: 578743542
effective search space used: 578743542
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.