SNX20 15965

Name: SNX20	Sequence: fasta or formatted (129aa)		NCBI GI: 23503255
Description: sorting nexin 20 isoform 2		Referenced in: Additional Host Defense Functions ER, Golgi, and the Secretory Pathway
Other entries for this name: alt prot [102aa] sorting nexin 20 isoform 3 alt prot [316aa] sorting nexin 20 isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.4 7 1 C cysteine 3.1 4 1 D aspartate 3.9 5 1 E glutamate 7.0 9 2 F phenylalanine 1.6 2 1 G glycine 9.3 12 1 H histidine 3.9 5 1 I isoleucine 2.3 3 1 K lysine 4.7 6 1 L leucine 5.4 7 2 M methionine 4.7 6 1 N asparagine 1.6 2 1 P proline 11.6 15 1 Q glutamine 6.2 8 2 R arginine 7.0 9 1 S serine 9.3 12 2 T threonine 7.8 10 2 V valine 2.3 3 1 W tryptophan 1.6 2 1 Y tyrosine 1.6 2 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 sorting nexin 20 isoform 2 SNX20 0.704 sorting nexin 20 isoform 1 SNX20 0.704 sorting nexin 20 isoform 3 SNX21 0.036 sorting nexin 21 isoform a SNX21 0.036 sorting nexin 21 isoform b SNX21 0.036 sorting nexin 21 isoform d SYN1 0.032 synapsin I isoform Ia SYN1 0.032 synapsin I isoform Ib MEOX2 0.024 mesenchyme homeobox 2 C10orf47 0.020 hypothetical protein LOC254427 COL4A3 0.020 alpha 3 type IV collagen isoform 5 precursor COL4A3 0.020 alpha 3 type IV collagen isoform 4 precursor COL4A3 0.020 alpha 3 type IV collagen isoform 2 precursor COL4A3 0.020 alpha 3 type IV collagen isoform 1 precursor AKNA 0.020 AT-hook transcription factor PHOX2B 0.020 paired-like homeobox 2b UTF1 0.020 undifferentiated embryonic cell transcription factor... SPTAN1 0.020 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ... SPTAN1 0.020 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ... COL7A1 0.020 alpha 1 type VII collagen precursor C2orf55 0.020 hypothetical protein LOC343990 SNX21 0.020 sorting nexin 21 isoform c LOC339742 0.016 PREDICTED: hypothetical protein LOC100134240 0.016 PREDICTED: hypothetical protein LOC100133638 0.016 PREDICTED: hypothetical protein LOC339742 0.016 PREDICTED: hypothetical protein MN1 0.016 meningioma 1 COL6A2 0.016 alpha 2 type VI collagen isoform 2C2a' precursor [H... COL6A2 0.016 alpha 2 type VI collagen isoform 2C2a precursor [Ho... COL6A2 0.016 alpha 2 type VI collagen isoform 2C2 precursor [Hom... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.