Guide to the Human Genome
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Name: LOC100133638 Sequence: fasta or formatted (218aa) NCBI GI: 169218002
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.8         30           2
 C cysteine            4.1          9           1
 D aspartate           2.3          5           1
 E glutamate           2.8          6           1
 F phenylalanine       0.0          0           0
 G glycine            12.8         28           4
 H histidine           3.2          7           1
 I isoleucine          2.3          5           1
 K lysine              1.4          3           1
 L leucine             5.0         11           1
 M methionine          0.9          2           1
 N asparagine          1.8          4           1
 P proline            17.9         39           3
 Q glutamine           4.6         10           2
 R arginine           11.0         24           2
 S serine              8.7         19           2
 T threonine           2.8          6           1
 V valine              3.7          8           1
 W tryptophan          0.9          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC339742             0.982   PREDICTED: hypothetical protein 
LOC100134240          0.980   PREDICTED: hypothetical protein 
LOC339742             0.948   PREDICTED: hypothetical protein 
LOC100132249          0.283   PREDICTED: hypothetical protein 
LOC643395             0.283   PREDICTED: hypothetical protein 
ARHGAP17              0.050   nadrin isoform 1 
ARHGAP17              0.050   nadrin isoform 2 
LOC100291061          0.050   PREDICTED: hypothetical protein XP_002348193 
LOC100287602          0.050   PREDICTED: hypothetical protein XP_002343855 
NACA                  0.045   nascent polypeptide-associated complex alpha subuni...
ATN1                  0.043   atrophin-1 
ATN1                  0.043   atrophin-1 
ZNF828                0.043   zinc finger protein 828 
HCN2                  0.043   hyperpolarization activated cyclic nucleotide-gated...
LOC100292865          0.043   PREDICTED: hypothetical protein 
BAT3                  0.043   HLA-B associated transcript-3 isoform b 
BAT3                  0.043   HLA-B associated transcript-3 isoform b 
BAT3                  0.043   HLA-B associated transcript-3 isoform b 
BAT3                  0.043   HLA-B associated transcript-3 isoform a 
WIPF1                 0.041   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.041   WAS/WASL interacting protein family, member 1 
IQSEC2                0.041   IQ motif and Sec7 domain 2 isoform1 
LOC388906             0.041   PREDICTED: hypothetical protein 
LOC100291479          0.041   PREDICTED: hypothetical protein XP_002348186 
LOC388906             0.041   PREDICTED: hypothetical protein 
FLJ22184              0.041   PREDICTED: hypothetical protein FLJ22184 
LOC388906             0.041   PREDICTED: hypothetical protein 
C16orf11              0.038   hypothetical protein LOC146325 
PRB4                  0.038   proline-rich protein BstNI subfamily 4 precursor [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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