Guide to the Human Genome
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Name: LOC339742 Sequence: fasta or formatted (245aa) NCBI GI: 169163057
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {351aa} PREDICTED: hypothetical protein LOC339742
alt prot {292aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.5         33           2
 C cysteine            3.7          9           1
 D aspartate           2.4          6           1
 E glutamate           2.9          7           1
 F phenylalanine       0.8          2           1
 G glycine            11.4         28           4
 H histidine           2.9          7           1
 I isoleucine          2.4          6           1
 K lysine              1.6          4           1
 L leucine             5.3         13           1
 M methionine          1.2          3           1
 N asparagine          1.6          4           1
 P proline            16.7         41           3
 Q glutamine           4.5         11           2
 R arginine           12.2         30           2
 S serine              7.8         19           2
 T threonine           2.4          6           1
 V valine              5.3         13           2
 W tryptophan          1.2          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100134240          0.996   PREDICTED: hypothetical protein 
LOC100133638          0.877   PREDICTED: hypothetical protein 
LOC339742             0.861   PREDICTED: hypothetical protein 
LOC100132249          0.253   PREDICTED: hypothetical protein 
LOC643395             0.253   PREDICTED: hypothetical protein 
ARHGAP17              0.048   nadrin isoform 1 
ARHGAP17              0.048   nadrin isoform 2 
LOC100291061          0.044   PREDICTED: hypothetical protein XP_002348193 
LOC100287602          0.044   PREDICTED: hypothetical protein XP_002343855 
DACT3                 0.042   thymus expressed gene 3-like 
LOC100292865          0.042   PREDICTED: hypothetical protein 
MYO15A                0.040   myosin XV 
NACA                  0.040   nascent polypeptide-associated complex alpha subuni...
LOC100293375          0.038   PREDICTED: hypothetical protein 
ATN1                  0.038   atrophin-1 
ATN1                  0.038   atrophin-1 
ZNF828                0.038   zinc finger protein 828 
BAT3                  0.038   HLA-B associated transcript-3 isoform b 
BAT3                  0.038   HLA-B associated transcript-3 isoform b 
BAT3                  0.038   HLA-B associated transcript-3 isoform b 
BAT3                  0.038   HLA-B associated transcript-3 isoform a 
HCN2                  0.036   hyperpolarization activated cyclic nucleotide-gated...
WIPF1                 0.036   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.036   WAS/WASL interacting protein family, member 1 
IQSEC2                0.036   IQ motif and Sec7 domain 2 isoform1 
ZBTB4                 0.036   zinc finger and BTB domain containing 4 
ZBTB4                 0.036   zinc finger and BTB domain containing 4 
LOC388906             0.036   PREDICTED: hypothetical protein 
LOC100291479          0.036   PREDICTED: hypothetical protein XP_002348186 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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