Guide to the Human Genome
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Name: CSTF2T Sequence: fasta or formatted (616aa) NCBI GI: 14149675
Description:

cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant

Referenced in:

Polyadenylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         43           2
 C cysteine            0.6          4           1
 D aspartate           3.7         23           1
 E glutamate           5.5         34           2
 F phenylalanine       1.1          7           1
 G glycine            14.9         92           3
 H histidine           1.5          9           2
 I isoleucine          5.4         33           2
 K lysine              2.6         16           1
 L leucine             7.5         46           2
 M methionine          5.0         31           1
 N asparagine          2.3         14           1
 P proline            12.2         75           2
 Q glutamine           8.0         49           2
 R arginine            6.5         40           2
 S serine              6.3         39           2
 T threonine           3.6         22           1
 V valine              5.2         32           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.1          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cleavage stimulation factor, 3' pre-RNA, subunit 2, ... 
CSTF2                 0.647   cleavage stimulation factor subunit 2 
WDR33                 0.043   WD repeat domain 33 isoform 1 
RBMX2                 0.042   RNA binding motif protein, X-linked 2 
RBM39                 0.036   RNA binding motif protein 39 isoform b 
RBM39                 0.036   RNA binding motif protein 39 isoform a 
COL9A3                0.036   alpha 3 type IX collagen 
COL5A1                0.033   alpha 1 type V collagen preproprotein 
RBM34                 0.033   RNA binding motif protein 34 isoform 1 
RBM23                 0.033   RNA binding motif protein 23 isoform 3 
RBM23                 0.033   RNA binding motif protein 23 isoform 1 
RBM23                 0.033   RNA binding motif protein 23 isoform 2 
CIRBP                 0.032   cold inducible RNA binding protein 
COL13A1               0.032   alpha 1 type XIII collagen isoform 12 
COL13A1               0.032   alpha 1 type XIII collagen isoform 7 
COL28A1               0.031   collagen, type XXVIII precursor 
RBM3                  0.031   RNA binding motif protein 3 
RBM8A                 0.030   RNA binding motif protein 8A 
SFPQ                  0.030   splicing factor proline/glutamine rich (polypyrimidin...
COL13A1               0.030   alpha 1 type XIII collagen isoform 19 
COL13A1               0.030   alpha 1 type XIII collagen isoform 15 
SNRNP70               0.030   U1 small nuclear ribonucleoprotein 70 kDa 
COL13A1               0.030   alpha 1 type XIII collagen isoform 13 
COL13A1               0.030   alpha 1 type XIII collagen isoform 6 
SMARCA4               0.030   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.030   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.030   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.030   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.030   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.030   SWI/SNF-related matrix-associated actin-dependent r...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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