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Search of human proteins with 21955170
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21955170 single stranded DNA binding protein 3 isoform a
[Homo sapiens]
(388 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21955170 single stranded DNA binding protein 3 isoform a [Hom... 846 0.0
gi|21314684 single stranded DNA binding protein 3 isoform b [Hom... 790 0.0
gi|58218981 single stranded DNA binding protein 3 isoform c [Hom... 770 0.0
gi|40787999 single-stranded DNA binding protein 2 [Homo sapiens] 639 0.0
gi|14249150 single stranded DNA binding protein 4 isoform a [Hom... 607 e-174
gi|58218984 single stranded DNA binding protein 4 isoform b [Hom... 561 e-160
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 107 1e-23
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 92 1e-18
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 87 3e-17
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 87 3e-17
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 86 7e-17
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 84 2e-16
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 84 2e-16
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 84 2e-16
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 84 2e-16
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 84 2e-16
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 83 5e-16
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 82 8e-16
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 82 8e-16
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 81 1e-15
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 80 3e-15
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 79 5e-15
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 79 9e-15
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens] 78 2e-14
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 77 2e-14
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 77 2e-14
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 76 5e-14
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 76 5e-14
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 75 1e-13
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 75 1e-13
>gi|21955170 single stranded DNA binding protein 3 isoform a [Homo
sapiens]
Length = 388
Score = 846 bits (2186), Expect = 0.0
Identities = 388/388 (100%), Positives = 388/388 (100%)
Query: 1 MFAKGKGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLH 60
MFAKGKGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLH
Sbjct: 1 MFAKGKGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLH 60
Query: 61 SWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGF 120
SWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGF
Sbjct: 61 SWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGF 120
Query: 121 FQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL 180
FQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL
Sbjct: 121 FQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL 180
Query: 181 LPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMG 240
LPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMG
Sbjct: 181 LPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMG 240
Query: 241 PGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINP 300
PGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINP
Sbjct: 241 PGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINP 300
Query: 301 VPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGT 360
VPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGT
Sbjct: 301 VPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGT 360
Query: 361 PRDDGELGGNFLHSFQNDNYSPSMTMSV 388
PRDDGELGGNFLHSFQNDNYSPSMTMSV
Sbjct: 361 PRDDGELGGNFLHSFQNDNYSPSMTMSV 388
>gi|21314684 single stranded DNA binding protein 3 isoform b [Homo
sapiens]
Length = 368
Score = 790 bits (2041), Expect = 0.0
Identities = 368/388 (94%), Positives = 368/388 (94%), Gaps = 20/388 (5%)
Query: 1 MFAKGKGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLH 60
MFAKGKGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLH
Sbjct: 1 MFAKGKGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLH 60
Query: 61 SWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGF 120
SWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGF
Sbjct: 61 SWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGF 120
Query: 121 FQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL 180
FQGPPGSQPSPHAQPPPHNPSSMMGPHSQP PGGVPGTQPL
Sbjct: 121 FQGPPGSQPSPHAQPPPHNPSSMMGPHSQP--------------------PGGVPGTQPL 160
Query: 181 LPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMG 240
LPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMG
Sbjct: 161 LPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMG 220
Query: 241 PGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINP 300
PGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINP
Sbjct: 221 PGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINP 280
Query: 301 VPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGT 360
VPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGT
Sbjct: 281 VPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGT 340
Query: 361 PRDDGELGGNFLHSFQNDNYSPSMTMSV 388
PRDDGELGGNFLHSFQNDNYSPSMTMSV
Sbjct: 341 PRDDGELGGNFLHSFQNDNYSPSMTMSV 368
>gi|58218981 single stranded DNA binding protein 3 isoform c [Homo
sapiens]
Length = 361
Score = 770 bits (1988), Expect = 0.0
Identities = 361/388 (93%), Positives = 361/388 (93%), Gaps = 27/388 (6%)
Query: 1 MFAKGKGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLH 60
MFAKGKGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLH
Sbjct: 1 MFAKGKGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLH 60
Query: 61 SWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGF 120
SWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGF
Sbjct: 61 SWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGF 120
Query: 121 FQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL 180
FQ PFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL
Sbjct: 121 FQ---------------------------PFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL 153
Query: 181 LPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMG 240
LPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMG
Sbjct: 154 LPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMG 213
Query: 241 PGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINP 300
PGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINP
Sbjct: 214 PGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINP 273
Query: 301 VPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGT 360
VPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGT
Sbjct: 274 VPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGT 333
Query: 361 PRDDGELGGNFLHSFQNDNYSPSMTMSV 388
PRDDGELGGNFLHSFQNDNYSPSMTMSV
Sbjct: 334 PRDDGELGGNFLHSFQNDNYSPSMTMSV 361
>gi|40787999 single-stranded DNA binding protein 2 [Homo sapiens]
Length = 361
Score = 639 bits (1648), Expect = 0.0
Identities = 303/391 (77%), Positives = 329/391 (84%), Gaps = 33/391 (8%)
Query: 1 MFAKGKG--SAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF 58
M+ KGK SAVPSD QAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
Sbjct: 1 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF 60
Query: 59 LHSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPP 118
LHSWWCVFWDLYCAAPERR+TCEHSSEAKAFHDYSAAAAPSPVLGNIPP DGMP GP+PP
Sbjct: 61 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP 120
Query: 119 GFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQ 178
GFF QPFMSPRY GGPRPP+R+ NQ GGVPG+Q
Sbjct: 121 GFF---------------------------QPFMSPRYPGGPRPPLRIPNQALGGVPGSQ 153
Query: 179 PLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSL-GPAMPGI 237
PLLP+ MDPTRQQGHPNMGG MQRM PPRGM P+ GPQNYG MRPP N+L GP MPG+
Sbjct: 154 PLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPL--GPQNYGGAMRPPLNALGGPGMPGM 211
Query: 238 NMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTM 297
NMGPG GRPWPNP +ANSIPYSS+SPG YVGPPGGGGPPGTPIMPSPADSTNS DN+YT+
Sbjct: 212 NMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTL 271
Query: 298 INPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNP 357
+N VPPG +R NFPMGPGSDGPMGG+GGME HHMNGSLGSGD+D + KNSPNN+S +SN
Sbjct: 272 MNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMS-LSNQ 330
Query: 358 PGTPRDDGELGGNFLHSFQNDNYSPSMTMSV 388
PGTPRDDGE+GGNFL+ FQ+++YSPSMTMSV
Sbjct: 331 PGTPRDDGEMGGNFLNPFQSESYSPSMTMSV 361
>gi|14249150 single stranded DNA binding protein 4 isoform a [Homo
sapiens]
Length = 385
Score = 607 bits (1566), Expect = e-174
Identities = 285/394 (72%), Positives = 329/394 (83%), Gaps = 15/394 (3%)
Query: 1 MFAKG-KGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFL 59
M+AKG KGSAVPSD QAREKLALYVYEYLLH+GAQKSAQTFLSEIRWEKNITLGEPPGFL
Sbjct: 1 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL 60
Query: 60 HSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPG 119
HSWWCVFWDLYCAAP+RR+ CEHS EAKAF DYSAAAAPSPV+G++ P D M G + G
Sbjct: 61 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG 120
Query: 120 FFQGPPGSQPSPHAQPPPHNPSS-MMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQ 178
FFQGPPGSQPS PHNP++ MMGPH QPFMSPR+ GGPRP +RM +QPP G+PG+Q
Sbjct: 121 FFQGPPGSQPS------PHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQ 174
Query: 179 PLLPNSMDPT-RQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSL-GPAMPG 236
PLLP +M+P+ R QGHP+MGG MQR+ PPRGM + GPQ+YG GMRPPPNSL GP +P
Sbjct: 175 PLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASV--GPQSYGGGMRPPPNSLAGPGLPA 232
Query: 237 INMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYT 296
+NMGPG PW +P S NSIPYSSSSPG+Y GPPGGGGPPGTPIMPSP DSTNSS+N+YT
Sbjct: 233 MNMGPGVRGPWASP-SGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYT 291
Query: 297 MINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISN 356
++NP+ G R+NFP+GPG +GPM M MEPHH+NGSLGSGD+DGLPK+SP ++G+SN
Sbjct: 292 IMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSN 351
Query: 357 PPGTPRDDGEL--GGNFLHSFQNDNYSPSMTMSV 388
PGTPRDDGE+ G FLH F +++YSP MTMSV
Sbjct: 352 APGTPRDDGEMAAAGTFLHPFPSESYSPGMTMSV 385
>gi|58218984 single stranded DNA binding protein 4 isoform b [Homo
sapiens]
Length = 363
Score = 561 bits (1445), Expect = e-160
Identities = 267/393 (67%), Positives = 309/393 (78%), Gaps = 35/393 (8%)
Query: 1 MFAKG-KGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFL 59
M+AKG KGSAVPSD QAREKLALYVYEYLLH+GAQKSAQTFLSEIRWEKNITLGEPPGFL
Sbjct: 1 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL 60
Query: 60 HSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPG 119
HSWWCVFWDLYCAAP+RR+ CEHS EAKAF DYSAAAAPSPV+G++ P D M G + G
Sbjct: 61 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG 120
Query: 120 FFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQP 179
FF QPFMSPR+ GGPRP +RM +QPP G+PG+QP
Sbjct: 121 FF---------------------------QPFMSPRFPGGPRPTLRMPSQPPAGLPGSQP 153
Query: 180 LLPNSMDPT-RQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSL-GPAMPGI 237
LLP +M+P+ R QGHP+MGG MQR+ PPRGM + GPQ+YG GMRPPPNSL GP +P +
Sbjct: 154 LLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASV--GPQSYGGGMRPPPNSLAGPGLPAM 211
Query: 238 NMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTM 297
NMGPG PW +P S NSIPYSSSSPG+Y GPPGGGGPPGTPIMPSP DSTNSS+N+YT+
Sbjct: 212 NMGPGVRGPWASP-SGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTI 270
Query: 298 INPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNP 357
+NP+ G R+NFP+GPG +GPM M MEPHH+NGSLGSGD+DGLPK+SP ++G+SN
Sbjct: 271 MNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNA 330
Query: 358 PGTPRDDGEL--GGNFLHSFQNDNYSPSMTMSV 388
PGTPRDDGE+ G FLH F +++YSP MTMSV
Sbjct: 331 PGTPRDDGEMAAAGTFLHPFPSESYSPGMTMSV 363
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 107 bits (268), Expect = 1e-23
Identities = 101/313 (32%), Positives = 113/313 (36%), Gaps = 38/313 (12%)
Query: 83 SSEAKAFHDYSAAAAPSPVLGN---IPPNDGMP--GGPIPPGFFQGPP---GSQPSPHAQ 134
SS D S +PS + GN PP G G P PPG QGPP G+QP Q
Sbjct: 14 SSAQNLNEDVSQEESPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQP----Q 69
Query: 135 PPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHP 194
PP P GP Q P+ GP PP + PP G P P P + QG P
Sbjct: 70 GPPPPPGKPQGPPPQGGNKPQ---GPPPPGKPQGPPPQGDKSRSPRSP----PGKPQGPP 122
Query: 195 NMGGSMQRMNPPRGMGPMGPGPQ--NYGSGMRPPPNSLGPAMPGINMGPGAGRP-----W 247
GG+ + PP P GP PQ N G PP GP G N + P
Sbjct: 123 PQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQG 182
Query: 248 PNPNSANSIPYSSSSPGTYVGPPGGGG-------PPGTPIMPSPADSTNSSDNIYTMINP 300
P P N PG GPP GG PPG P P P S P
Sbjct: 183 PPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKP 242
Query: 301 VPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLG---SGDIDGLPKNSPNNISGISNP 357
P N P GP P G G P N G G G P + +P
Sbjct: 243 QGPPPQGGNQPQGP--PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSP 300
Query: 358 PGTPRDDGELGGN 370
PG P+ GGN
Sbjct: 301 PGKPQGPPPQGGN 313
Score = 89.4 bits (220), Expect = 5e-18
Identities = 76/234 (32%), Positives = 85/234 (36%), Gaps = 40/234 (17%)
Query: 98 PSPVLGNIPPNDGMPGGPIPPGFFQGPP--GSQPSPHAQPPPHNPSSMMGPHSQPFMSPR 155
P G P P GP PPG QGPP G S A+ PP P GP Q P+
Sbjct: 198 PGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQ---GPPPQGGNQPQ 254
Query: 156 YAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPG 215
G P PP + PP G G +P P P + QG P GGS R + P GP
Sbjct: 255 --GPPPPPGKPQGPPPQG--GNKPQGPPP--PGKPQGPPPQGGSKSRSSRSPPGKPQGPP 308
Query: 216 PQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGG- 274
PQ PPP PG GP P + P PG GPP GG
Sbjct: 309 PQGGNQPQGPPP------PPGKPQGP--------PPQGGNKPQGPPPPGKPQGPPPQGGS 354
Query: 275 -------PPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMG 321
PPG P P + N P PP G P P + P G
Sbjct: 355 KSRSARSPPGKPQGPPQQEGNNPQ-------GPPPPAGGNPQQPQAPPAGQPQG 401
Score = 67.4 bits (163), Expect = 2e-11
Identities = 64/197 (32%), Positives = 73/197 (37%), Gaps = 25/197 (12%)
Query: 93 SAAAAPSPVLGNIPPNDGMPGGPIPP-GFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPF 151
SA + P G P P GP PP G QGPP + PPP P GP Q
Sbjct: 234 SARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPP--PGKPQGPPPQGG 291
Query: 152 MSPRYAGGPR-----PPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPP 206
R + P PP + GNQP G P P + QG P GG+ + PP
Sbjct: 292 SKSRSSRSPPGKPQGPPPQGGNQPQGPPP----------PPGKPQGPPPQGGNKPQGPPP 341
Query: 207 RGMGPMGPGPQNYG---SGMRPPPNSLGPAMPGINMGPGAGRP-WPNPNSANSIPYSSSS 262
G P GP PQ S PP GP N G P NP + P +
Sbjct: 342 PGK-PQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPP--AGQ 398
Query: 263 PGTYVGPPGGGGPPGTP 279
P PP GG P P
Sbjct: 399 PQGPPRPPQGGRPSRPP 415
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 91.7 bits (226), Expect = 1e-18
Identities = 94/305 (30%), Positives = 109/305 (35%), Gaps = 45/305 (14%)
Query: 83 SSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSS 142
SS D S +PS + GN P GP P G G++P Q PP P
Sbjct: 14 SSAQNLNEDVSQEESPSLIAGN-------PQGPSPQG------GNKP----QGPPPPPGK 56
Query: 143 MMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQR 202
GP Q P+ GP PP + PP G P P P + QG P GG+ +
Sbjct: 57 PQGPPPQGGNKPQ---GPPPPGKPQGPPPQGDKSRSPRSP----PGKPQGPPPQGGNQPQ 109
Query: 203 MNPPRGMGPMGPGPQ--NYGSGMRPPPNSLGPAMPGIN----MGPGAGRPWPNPNSANSI 256
PP P GP PQ N G PP GP G P P P N
Sbjct: 110 GPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQP 169
Query: 257 PYSSSSPGTYVGPPGGGG-------PPGTPIMPSP-ADSTNSSDNIYTMINPVPPGGSRS 308
PG GPP GG PPG P P P D + SS + PP G
Sbjct: 170 QGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQG--G 227
Query: 309 NFPMGPGSDGPMGGMGGMEPHHMNGSLG---SGDIDGLPKNSPNNISGISNPPGTPRDDG 365
N P GP P G G P N G G G P + +PPG P+
Sbjct: 228 NQPQGP--PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPP 285
Query: 366 ELGGN 370
+ GN
Sbjct: 286 QQEGN 290
Score = 90.9 bits (224), Expect = 2e-18
Identities = 79/241 (32%), Positives = 87/241 (36%), Gaps = 41/241 (17%)
Query: 98 PSPVLGNIPPNDGMPGGPIPPGFFQGPPGSQPS-PHAQPPPHNPSSMMGPHSQPFMSPRY 156
P P GN P G P PPG QGPP + P PPP P P SPR
Sbjct: 100 PPPQGGNQPQ-----GPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPP-PQGDKSRSPRS 153
Query: 157 AGGPR--PPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGP 214
G PP + GNQP G P P + QG P GG + PP G P GP
Sbjct: 154 PPGKPQGPPPQGGNQPQGPPP----------PPGKPQGPPPQGGKKPQGPPPPGK-PQGP 202
Query: 215 GPQN--YGSGMRPPPNSLGPAMPGINMGPGA----GRPWPNPNSANSIPYSSSSPGTYVG 268
PQ S PP GP G N G G+P P + P PG G
Sbjct: 203 PPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQG 262
Query: 269 PPGGGG--------PPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPM 320
PP GG PPG P P + N P PP G P P + P
Sbjct: 263 PPAQGGSKSQSARSPPGKPQGPPQQEGNNPQ-------GPPPPAGGNPQQPQAPPAGQPQ 315
Query: 321 G 321
G
Sbjct: 316 G 316
Score = 85.5 bits (210), Expect = 7e-17
Identities = 82/255 (32%), Positives = 90/255 (35%), Gaps = 43/255 (16%)
Query: 98 PSPVLGNIP---PNDGMPGGP-----------IPPGFFQGPP---GSQPSPHAQPPPHNP 140
P P GN P P G P GP PPG QGPP G+QP Q PP P
Sbjct: 60 PPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQP----QGPPPPP 115
Query: 141 SSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSM 200
GP Q P+ GP PP + PP G P P P + QG P GG+
Sbjct: 116 GKPQGPPPQGGNRPQ---GPPPPGKPQGPPPQGDKSRSPRSP----PGKPQGPPPQGGNQ 168
Query: 201 QRMNPPRGMGPMGPGPQNYGSGMRPPP--NSLGPAMPG----INMGPGAGRPWPNPNSAN 254
+ PP P GP PQ PPP GP G + P P P N
Sbjct: 169 PQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGN 228
Query: 255 SIPYSSSSPGTYVGPPGGGG-------PPGTPIMPSPADSTNSSDNIYTMINPVPPGGSR 307
PG GPP GG PPG P P + S P P
Sbjct: 229 QPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQE 288
Query: 308 SNFPMGPGSDGPMGG 322
N P GP P GG
Sbjct: 289 GNNPQGP--PPPAGG 301
Score = 78.2 bits (191), Expect = 1e-14
Identities = 74/229 (32%), Positives = 81/229 (35%), Gaps = 35/229 (15%)
Query: 98 PSPVLGNIP---PNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPF--M 152
P P GN P P G P GP P G P S P PPP + GP P
Sbjct: 121 PPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQ 180
Query: 153 SPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMD----PTRQQGHPNMGGSMQRMNPPRG 208
P GG +P G PPG G P S P + QG P GG+ + PP
Sbjct: 181 GPPPQGGKKP---QGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPP 237
Query: 209 MGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVG 268
P GP PQ PPP PG GP A + SA S P P G
Sbjct: 238 GKPQGPPPQGGNKPQGPPP-------PGKPQGPPA-QGGSKSQSARSPPGKPQGPPQQEG 289
Query: 269 ------PPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFP 311
PP GG P P P PA P PP G R + P
Sbjct: 290 NNPQGPPPPAGGNPQQPQAP-PAGQPQGP--------PRPPQGGRPSRP 329
Score = 52.0 bits (123), Expect = 9e-07
Identities = 50/151 (33%), Positives = 62/151 (41%), Gaps = 33/151 (21%)
Query: 106 PPNDGM-PGGPIPPGFFQGPPGS-QPSPHAQPPPHNPSSMMGPH----SQPFMSPRYAGG 159
PP G P GP PPG QGPP S +Q PP P GP +QP P G
Sbjct: 183 PPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQ---GPPPQGGNQPQGPPPPPGK 239
Query: 160 PR-PPIRMGNQPPGGVPGTQPLLPNSMD----------------PTRQQGH------PNM 196
P+ PP + GN+P G P +P P + P +Q+G+ P
Sbjct: 240 PQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPA 299
Query: 197 GGSMQRMNPPRGMGPMG-PGPQNYGSGMRPP 226
GG+ Q+ P P G P P G RPP
Sbjct: 300 GGNPQQPQAPPAGQPQGPPRPPQGGRPSRPP 330
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 87.0 bits (214), Expect = 3e-17
Identities = 92/311 (29%), Positives = 106/311 (34%), Gaps = 52/311 (16%)
Query: 96 AAPSPVLGNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPR 155
A P G P DG+PGGP +G PGS P + P P S
Sbjct: 515 AGPRGAAGE-PGRDGVPGGP----GMRGMPGSPGGPGSDGKPGPPGSQ-----------G 558
Query: 156 YAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPG 215
+G P PP G P G PG P G P G P G GP GP
Sbjct: 559 ESGRPGPP---GPSGPRGQPGVMGF----PGPKGNDGAPGKNGER---GGPGGPGPQGPP 608
Query: 216 PQNYGSGMRPPPNSLG----------PAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGT 265
+N +G + PP G P G+ PG G P P N P G
Sbjct: 609 GKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGP-PGENGKPGEPGPKGDAGA 667
Query: 266 YVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGP----------G 315
G PGG G G P P + P P GG + P GP G
Sbjct: 668 -PGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQG 726
Query: 316 SDGPMGGMGGMEPHHMNGSLGSGDIDGLP-KNSPNNISGISNPP---GTPRDDGELGGNF 371
G GG+G P G G DG+P K+ P +G PP G P D GE G
Sbjct: 727 MPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPG 786
Query: 372 LHSFQNDNYSP 382
L SP
Sbjct: 787 LPGIAGPRGSP 797
Score = 85.5 bits (210), Expect = 7e-17
Identities = 99/333 (29%), Positives = 119/333 (35%), Gaps = 71/333 (21%)
Query: 89 FHDYSAAAAPSPVLGNIPPN----DGMPGGPIPPGF--------FQGPPGSQPSPHAQPP 136
F + A P PPN G G P PPG G PGS SP PP
Sbjct: 81 FGECCAVCPQPPTAPTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPG--PP 138
Query: 137 PHNPSSMMGPHSQPFMSPRY--------------AGGPRPPIRMGNQPPGGVPGTQ--PL 180
S GP + SP+Y AG P P G P G PGT P
Sbjct: 139 GICESCPTGPQNY---SPQYDSYDVKSGVAVGGLAGYPGPA---GPPGPPGPPGTSGHPG 192
Query: 181 LPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLG-PAMPGINM 239
P S G P G PP +GP GP ++ SG P G P PGI
Sbjct: 193 SPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIK- 251
Query: 240 GPGAGRPW----------------------PNPNSANSIPYSSSSPGTYVGPPGGGGPPG 277
GP AG P P N +P + +PG +GP G G G
Sbjct: 252 GP-AGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGP-MGPRGAPGERG 309
Query: 278 TPIMPSPADSTNSSDNIYTMINPVPPGG-SRSNFPMGPGSDGPMGGMGGMEPHHMNGSLG 336
P +P A + + + P PPG + FP PG+ G +G G GS G
Sbjct: 310 RPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSP------GSNG 363
Query: 337 SGDIDGLPKNSPNNISGISNPPGTPRDDGELGG 369
+ G P P +G PPG P +G GG
Sbjct: 364 APGQRGEP--GPQGHAGAQGPPGPPGINGSPGG 394
Score = 80.1 bits (196), Expect = 3e-15
Identities = 97/302 (32%), Positives = 110/302 (36%), Gaps = 55/302 (18%)
Query: 96 AAPSPVLGNIPPNDGMPGGPIPPGFFQGP--PGSQPSPHAQPP--PHNPSSMMGPHSQPF 151
AA +P L +P G G P P G P PG+ P P P P GP QP
Sbjct: 718 AAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPG 777
Query: 152 M-----SPRYAG--GPR--PPIRMGNQPPG--GVPGT--QPLLPNSMDPTRQQGHPNMGG 198
+P G GPR P R PPG G PG Q P G GG
Sbjct: 778 DKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGG 837
Query: 199 SMQRMNPPRGMGPMG-PGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIP 257
PP G GP G PGPQ G R P GP G PGA R P P +N P
Sbjct: 838 PPGVAGPPGGSGPAGPPGPQGV-KGERGSPG--GPGAAGF---PGA-RGLPGPPGSNGNP 890
Query: 258 YSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMG---- 313
GPPG G PG P PA +T + P PG S G
Sbjct: 891 ----------GPPGPSGSPGKDGPPGPAGNTGA---------PGSPGVSGPKGDAGQPGE 931
Query: 314 ---PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP----KNSPNNISGISNPPGTPRDDGE 366
PG+ GP G G + + G+ G G+P P + G S PG GE
Sbjct: 932 KGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGE 991
Query: 367 LG 368
G
Sbjct: 992 RG 993
Score = 75.5 bits (184), Expect = 8e-14
Identities = 80/277 (28%), Positives = 96/277 (34%), Gaps = 25/277 (9%)
Query: 103 GNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGG-PR 161
G P G PGG P G PPG Q + P P + P ++ P + G P
Sbjct: 836 GGPPGVAGPPGGSGPAG----PPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPG 891
Query: 162 PPIRMGNQPPGGVPGTQ-----PLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGP 216
PP G+ G PG P P P G P GS PP GP+G
Sbjct: 892 PPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAG 951
Query: 217 QNYGSGMRPPPNSLGP-AMPGINMGPG-AGRPWPNPNSA-NSIPYSSSSPGT--YVGPPG 271
G+ PP GP PG G +G+P N S P PG G PG
Sbjct: 952 ITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPG 1011
Query: 272 GGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHM 331
G PG+ +P S + +P PG P PG GP+G G
Sbjct: 1012 RDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGA-----PGHPGPPGPVGPAGKSGDRGE 1066
Query: 332 NGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
+G G G P G P G D GE G
Sbjct: 1067 SGPAGPAGAPG-----PAGSRGAPGPQGPRGDKGETG 1098
Score = 73.6 bits (179), Expect = 3e-13
Identities = 80/286 (27%), Positives = 94/286 (32%), Gaps = 44/286 (15%)
Query: 106 PPNDGMPGGPIPPGF--------FQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMS---- 153
P G PG P P G GPPG P P P P G +S
Sbjct: 935 PGAQGPPGAPGPLGIAGITGARGLAGPPG-MPGPRGSPGPQGVKGESGKPGANGLSGERG 993
Query: 154 -------PRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPP 206
P AG P R GN G+PG P + G P G+ PP
Sbjct: 994 PPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGS-PGGKGDRGENGSPGAPGAPGHPGPP 1052
Query: 207 RGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGT- 265
GP+GP ++ G GPA P GP R P P + G
Sbjct: 1053 ---GPVGPAGKSGDRG------ESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAA 1103
Query: 266 -YVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGP-GSDGPMGGM 323
G G G PG P P PA + + P P G P GP G DG G
Sbjct: 1104 GIKGHRGFPGNPGAPGSPGPAGQQGAIGS------PGPAGPRGPVGPSGPPGKDGTSGHP 1157
Query: 324 GGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGG 369
G + P G+ G +G P + G PPG P G G
Sbjct: 1158 GPIGPPGPRGNRGERGSEGSPGH-----PGQPGPPGPPGAPGPCCG 1198
Score = 70.1 bits (170), Expect = 3e-12
Identities = 77/263 (29%), Positives = 92/263 (34%), Gaps = 40/263 (15%)
Query: 108 NDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMG 167
+DG PG P PPG G PGS + P +P S P + G P P G
Sbjct: 328 SDGQPGPPGPPGT-AGFPGSPGAKGEVGPAGSPGSNGAPGQR--------GEPGPQGHAG 378
Query: 168 NQPPGGVPGTQ--PLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRP 225
Q P G PG P M P G P + G+ GP GP N G+R
Sbjct: 379 AQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGAR---------GPPGPAGANGAPGLRG 429
Query: 226 PPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPA 285
G PG N G P A IP + G G G G PG +P A
Sbjct: 430 -----GAGEPGKNGAKGEPGPRGERGEAG-IPGVPGAKGED-GKDGSPGEPGANGLPGAA 482
Query: 286 DSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPK 345
+ P P G PG GP G G P G+ G DG+P
Sbjct: 483 GERGAPG----FRGPAGPNGI-------PGEKGPAGERGAPGPAGPRGAAGEPGRDGVPG 531
Query: 346 NSPNNISGISNPPGTPRDDGELG 368
+ G+ PG P DG+ G
Sbjct: 532 GP--GMRGMPGSPGGPGSDGKPG 552
Score = 62.8 bits (151), Expect = 5e-10
Identities = 79/266 (29%), Positives = 91/266 (34%), Gaps = 48/266 (18%)
Query: 106 PPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIR 165
P +G G P P G +G G P A+ S P + P AG P
Sbjct: 434 PGKNGAKGEPGPRGE-RGEAGIPGVPGAKGEDGKDGSPGEPGANGL--PGAAGERGAPGF 490
Query: 166 MGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRG-MGPMGPGPQNYGSGMR 224
G P G+PG + P ++G P G PRG G G G GMR
Sbjct: 491 RGPAGPNGIPGEK-------GPAGERGAPGPAG-------PRGAAGEPGRDGVPGGPGMR 536
Query: 225 PPPNSLGPAMPGINMGPGA-GRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTP-IMP 282
MPG GPG+ G+P P P S G GPPG GP G P +M
Sbjct: 537 --------GMPGSPGGPGSDGKPGP--------PGSQGESGR-PGPPGPSGPRGQPGVMG 579
Query: 283 SPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDG 342
P N P P GPG GP G G P G G G G
Sbjct: 580 FPGPKGNDG---------APGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKG 630
Query: 343 LPKNSPNNISGISNPPGTPRDDGELG 368
P G+ PGT GE G
Sbjct: 631 --DTGPPGPQGLQGLPGTGGPPGENG 654
Score = 55.8 bits (133), Expect = 6e-08
Identities = 57/191 (29%), Positives = 75/191 (39%), Gaps = 16/191 (8%)
Query: 205 PPRGMGPMGP----GP-----QNYGSGMRPPPNSLG-PAMPGINMGPGAGRPWPNPNSAN 254
PP G GP GP GP +N G+ P S G P PGI G +P +
Sbjct: 98 PPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDS 157
Query: 255 SIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMG- 313
S + G G PG GPPG P P + S + P PG + + P G
Sbjct: 158 YDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGP 217
Query: 314 PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLH 373
PG+ GP G G +G G GLP P I G + PG P G G + +
Sbjct: 218 PGAIGPSGPAG---KDGESGRPGRPGERGLP--GPPGIKGPAGIPGFPGMKGHRGFDGRN 272
Query: 374 SFQNDNYSPSM 384
+ + +P +
Sbjct: 273 GEKGETGAPGL 283
Score = 54.3 bits (129), Expect = 2e-07
Identities = 59/200 (29%), Positives = 72/200 (36%), Gaps = 24/200 (12%)
Query: 94 AAAAPSPVLGNIPPNDGMPGGPIPPG-----FFQGPPGSQPSP-HAQPP-PHNPSSMMGP 146
A A P P +DG+PG PG G PG+ +P H PP P P+ G
Sbjct: 1004 AGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGD 1063
Query: 147 HSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPP 206
+ + AG P P G P G G + T ++G + G P
Sbjct: 1064 RGESGPAGP-AGAPGPAGSRGAPGPQGPRGDK-------GETGERGAAGIKGHRGFPGNP 1115
Query: 207 RGMGPMGPGPQNYGSGMRPPPNSLGPAMP-------GINMGPGAGRPWPNPNSANSIPYS 259
G GP Q G P GP P G + PG P P P S
Sbjct: 1116 GAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGP-PGPRGNRGERGS 1174
Query: 260 SSSPGTYVGPPGGGGPPGTP 279
SPG + G PG GPPG P
Sbjct: 1175 EGSPG-HPGQPGPPGPPGAP 1193
Score = 54.3 bits (129), Expect = 2e-07
Identities = 58/195 (29%), Positives = 70/195 (35%), Gaps = 23/195 (11%)
Query: 99 SPVLGNIPPNDGMPGGPIPPGFFQGPPGSQPSP-HAQPP-PHNPSSMMGPHSQPFMSPRY 156
+P +P DG PGG G G PG+ +P H PP P P+ G + +
Sbjct: 1015 NPGSDGLPGRDGSPGGKGDRGE-NGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGP- 1072
Query: 157 AGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGP 216
AG P P G P G G + T ++G + G P G GP
Sbjct: 1073 AGAPGPAGSRGAPGPQGPRGDK-------GETGERGAAGIKGHRGFPGNPGAPGSPGPAG 1125
Query: 217 QNYGSGMRPPPNSLGPAMP-------GINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGP 269
Q G P GP P G + PG P P P S SPG
Sbjct: 1126 QQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGP-PGPRGNRGERGSEGSPGH---- 1180
Query: 270 PGGGGPPGTPIMPSP 284
PG GPPG P P P
Sbjct: 1181 PGQPGPPGPPGAPGP 1195
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 87.0 bits (214), Expect = 3e-17
Identities = 70/216 (32%), Positives = 81/216 (37%), Gaps = 37/216 (17%)
Query: 106 PPNDGMPGGPIPPGF--FQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPR-P 162
PP G P GP P G QGPP P PPP + GP +P G P P
Sbjct: 114 PPRPGKPEGPPPQGGNQSQGPPPRPGKPEG-PPPQGGNQSQGPPPRP-------GKPEGP 165
Query: 163 PIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSG 222
P + GNQ G P P + +G P GG+ + PPR P GP PQ
Sbjct: 166 PPQGGNQSQGPPP----------HPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQS 215
Query: 223 MRPPPNSLGPAMPGINMG-------PGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGP 275
PPP P P G P G+P P + P PG GPP GG
Sbjct: 216 QGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQGPPPPGGN 275
Query: 276 PGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFP 311
P P +P PA P PP G R + P
Sbjct: 276 PQQP-LPPPAGKPQGP--------PPPPQGGRPHRP 302
Score = 78.2 bits (191), Expect = 1e-14
Identities = 89/303 (29%), Positives = 105/303 (34%), Gaps = 56/303 (18%)
Query: 83 SSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSS 142
SS D S +PS + G P P G P PPG P +PP S
Sbjct: 14 SSAQSLNEDVSQEESPSVISGK--PEGRRPQGGNQPQRTPPPPGK---PEGRPPQGGNQS 68
Query: 143 MMGPHSQPFMSPRYAGGPR-PPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQ 201
GP +P G P PP + GNQ G P P + +G P GG+
Sbjct: 69 Q-GPPPRP-------GKPEGPPPQGGNQSQGPPPR----------PGKPEGQPPQGGNQS 110
Query: 202 RMNPPRGMGPMGPGPQNYGSGMRPPP---NSLGPAMPGINMG----PGAGRP-WPNPNSA 253
+ PPR P GP PQ PPP GP G N P G+P P P
Sbjct: 111 QGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGG 170
Query: 254 NSIPYSSSSPGTYVGPP--GGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNF- 310
N PG GPP GG G P P + P P GG++S
Sbjct: 171 NQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPE------------GPPPQGGNQSQGP 218
Query: 311 PMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSP---NNISGISNPPGTPRDDGEL 367
P PG GG +P G G P+ P N PPG P+
Sbjct: 219 PPRPGKPEGPPSQGGNKPQ------GPPPHPGKPQGPPPQEGNKPQRPPPPGRPQGPPPP 272
Query: 368 GGN 370
GGN
Sbjct: 273 GGN 275
Score = 76.6 bits (187), Expect = 3e-14
Identities = 63/189 (33%), Positives = 73/189 (38%), Gaps = 36/189 (19%)
Query: 98 PSPVLGNI----PPNDGMPGGPIPPGF--FQGPPGSQPSPHAQPPPHNPSSMMGPHSQPF 151
P P GN PP G P GP P G QGPP P PPP + GP +P
Sbjct: 144 PPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEG-PPPQGGNQSQGPPPRP- 201
Query: 152 MSPRYAGGPR-PPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMG 210
G P PP + GNQ G P P + +G P+ GG+ + PP
Sbjct: 202 ------GKPEGPPPQGGNQSQGPPPR----------PGKPEGPPSQGGNKPQGPPPHPGK 245
Query: 211 PMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPP 270
P GP PQ RPPP PG GP P P N +P + P PP
Sbjct: 246 PQGPPPQEGNKPQRPPP-------PGRPQGP----PPPGGNPQQPLPPPAGKPQGPPPPP 294
Query: 271 GGGGPPGTP 279
GG P P
Sbjct: 295 QGGRPHRPP 303
Score = 64.3 bits (155), Expect = 2e-10
Identities = 53/154 (34%), Positives = 61/154 (39%), Gaps = 29/154 (18%)
Query: 98 PSPVLGNI----PPNDGMPGGPIPPGF--FQGPPGSQPSPHAQPPPHNPSSMMGPHSQPF 151
P P GN PP+ G P GP P G QGPP P PPP + GP +P
Sbjct: 165 PPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEG-PPPQGGNQSQGPPPRP- 222
Query: 152 MSPRYAGGPR-PPIRMGNQPPGGVP------------GTQPLLPNSMDPTRQQGHPNMGG 198
G P PP + GN+P G P G +P P P R QG P GG
Sbjct: 223 ------GKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPP--PGRPQGPPPPGG 274
Query: 199 SMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGP 232
+ Q+ PP P GP P G PP P
Sbjct: 275 NPQQPLPPPAGKPQGPPPPPQGGRPHRPPQGQPP 308
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 85.5 bits (210), Expect = 7e-17
Identities = 86/280 (30%), Positives = 103/280 (36%), Gaps = 54/280 (19%)
Query: 110 GMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQ 169
G PG P P GF QGPPG P A P MGP G P PP + G+
Sbjct: 191 GPPGAPGPQGF-QGPPGEPGEPGASGP-------MGPR----------GPPGPPGKNGDD 232
Query: 170 PPGGVPGTQPLLPNSMDPTRQQGHPNMGGS--MQRMNPPRGM----------GPMGPGPQ 217
G PG P P QG + G+ + M RG GP GP +
Sbjct: 233 GEAGKPGR----PGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGE 288
Query: 218 NYGSGMRPPPNSLGP-AMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPP 276
G P +GP +PG PGA P P A ++ + G GP G GPP
Sbjct: 289 PGSPGENGAPGQMGPRGLPGERGRPGA----PGPAGARGNDGATGAAGP-PGPTGPAGPP 343
Query: 277 GTPIM------PSPADSTNSSDNIYTMINPVPPGGSRSNFPMG-PGSDGPMGGMGGMEPH 329
G P P S P PPG + + P G PG+DG G G
Sbjct: 344 GFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGA---- 399
Query: 330 HMNGSLGSGDIDGLP-KNSPNNISGISNPPGTPRDDGELG 368
NG+ G G P P+ G PPG + GE G
Sbjct: 400 --NGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPG 437
Score = 84.7 bits (208), Expect = 1e-16
Identities = 94/309 (30%), Positives = 113/309 (36%), Gaps = 54/309 (17%)
Query: 96 AAPSPVLGNI--PPNDGMPGGPIPPGFFQ--------GPPGSQPSPHAQPP----PHNPS 141
A P +GN+ P G G PPG GPPG PS +A PP P
Sbjct: 847 AGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPG--PSGNAGPPGPPGPAGKE 904
Query: 142 SMMGPHSQ--PFMSPRYAGGPRPPIRMGNQP------PGGVPGTQPLLPNSMDPTRQQGH 193
GP + P P G P PP G + P G PGT P Q+G
Sbjct: 905 GGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGT----PGPQGIAGQRGV 960
Query: 194 PNMGGSMQRMNPPRGMGPMG-PGPQ--NYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNP 250
+ G P GP G PG Q + SG R PP +GP PG+ PG P
Sbjct: 961 VGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGP--PGLAGPPGESGREGAP 1018
Query: 251 NSANSIPYSSSSPGTY--------VGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVP 302
+ S P SPG GPPG G PG P PA + P
Sbjct: 1019 GAEGS-PGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGET----GPAG 1073
Query: 303 PGGSRSNFPMGP-GSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTP 361
P G P+GP G+ GP G G G G I G + + G PPG+P
Sbjct: 1074 PAG-----PVGPVGARGPAGPQGPRGDKGETGEQGDRGIKG--HRGFSGLQGPPGPPGSP 1126
Query: 362 RDDGELGGN 370
+ G G +
Sbjct: 1127 GEQGPSGAS 1135
Score = 79.3 bits (194), Expect = 5e-15
Identities = 90/295 (30%), Positives = 104/295 (35%), Gaps = 45/295 (15%)
Query: 93 SAAAAPSPVLGNIPPNDGMPGGPIPPGFFQGPPGS--QPSPHAQPPPHNPSSMMGPHSQP 150
S A P+ G P + G PG P P GF GPPG+ QP +P GP
Sbjct: 787 SGPAGPTGARG-APGDRGEPGPPGPAGF-AGPPGADGQPGAKGEPGDAGAKGDAGP---- 840
Query: 151 FMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMG 210
P AG PP +GN G G + S P G P G + P G
Sbjct: 841 ---PGPAGPAGPPGPIGNVGAPGAKGAR----GSAGPPGATGFPGAAGRVGPPGPSGNAG 893
Query: 211 PMG-PGPQNYGSGMRP--------------PPNSLGPAMPGINMGPGAGRPWPNPNSANS 255
P G PGP G P PP GPA G PGA P P +
Sbjct: 894 PPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPA--GEKGSPGADGPAGAPGTPG- 950
Query: 256 IPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMG-P 314
P + VG PG G G P +P P+ PPG PMG P
Sbjct: 951 -PQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPG------PMGPP 1003
Query: 315 GSDGPMGGMGGMEPHHMNGSLGSGDIDGLP-KNSPNNISGISNPPGTPRDDGELG 368
G GP G G G+ GS DG P +G + PPG P G G
Sbjct: 1004 GLAGPPGESG---REGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPG 1055
Score = 77.8 bits (190), Expect = 2e-14
Identities = 87/289 (30%), Positives = 100/289 (34%), Gaps = 47/289 (16%)
Query: 106 PPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMG----PHSQPFMSPRYAGGPR 161
P G+PG PPG G PG Q P P PS G P + P GPR
Sbjct: 640 PGFQGLPGPAGPPGE-AGKPGEQGVPGDLGAP-GPSGARGERGFPGERGVQGPPGPAGPR 697
Query: 162 ----PPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGP--- 214
P G + G PG P S QG P G+ P G GP
Sbjct: 698 GANGAPGNDGAKGDAGAPGA----PGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGA 753
Query: 215 --GPQNYG-SGMRPPPNSLGPA-MPGINMGPGAGRPWPNPNSANSIPYSSSSPGT----- 265
P G G+ P GPA PG G P P A P PG
Sbjct: 754 DGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGP-AGPTGARGAPGDRGEPGPPGPAG 812
Query: 266 YVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGP-GSDGPMGGMG 324
+ GPPG G PG P A + + PPG P GP G GP+G +G
Sbjct: 813 FAGPPGADGQPGAKGEPGDAGAKGDAG---------PPG------PAGPAGPPGPIGNVG 857
Query: 325 GMEPHHMNGSLGSGDIDGLP----KNSPNNISGISNPPGTPRDDGELGG 369
GS G G P + P SG + PPG P G+ GG
Sbjct: 858 APGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGG 906
Score = 76.3 bits (186), Expect = 5e-14
Identities = 89/300 (29%), Positives = 105/300 (35%), Gaps = 54/300 (18%)
Query: 106 PPNDGMPGGPIPPGFFQGPPGSQ--------PSPHAQPPPHNPSSMMGPHSQPFMSPRY- 156
P D P GP P GPPG P P P P P +G + P +S Y
Sbjct: 113 PKGDTGPRGPRGPA---GPPGRDGIPGQPGLPGPPGPPGPPGPPG-LGGNFAPQLSYGYD 168
Query: 157 ---AGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG 213
GG P MG P G+PG P + P QG P G P GP G
Sbjct: 169 EKSTGGISVPGPMGPSGPRGLPGP----PGAPGPQGFQGPPGEPGEPGASGPMGPRGPPG 224
Query: 214 PGPQNYGS---------GMRPPPNSLGP-AMPGINMGPG-------------AGRPWP-N 249
P +N G R PP G +PG PG G P
Sbjct: 225 PPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAG 284
Query: 250 PNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSN 309
P P + +PG +GP G G G P P PA +D P P G
Sbjct: 285 PKGEPGSPGENGAPG-QMGPRGLPGERGRPGAPGPA-GARGNDGATGAAGPPGPTG---- 338
Query: 310 FPMG-PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
P G PG G +G G P GS G + G P P +G + P G P DG+ G
Sbjct: 339 -PAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEP--GPPGPAGAAGPAGNPGADGQPG 395
Score = 67.8 bits (164), Expect = 2e-11
Identities = 87/325 (26%), Positives = 113/325 (34%), Gaps = 59/325 (18%)
Query: 91 DYSAAAAPSPVLGNIPPND-------GMPGGPIPPGFFQGPPGSQPSPHAQ--PPPHNPS 141
D A P PV PP G G P P G GPPG + P ++ P +
Sbjct: 444 DTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGL-PGPPGERGGPGSRGFPGADGVA 502
Query: 142 SMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLL--PNSMDPTRQQGHPNMGGS 199
GP + SP AG P G G+PG + L P S P + G P G
Sbjct: 503 GPKGPAGERG-SPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQ 561
Query: 200 MQRMNPP-----------------------------RGM----GPMGPGPQNYGSGMRPP 226
R PP RG+ G +GP ++ +G + P
Sbjct: 562 DGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGP 621
Query: 227 PNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPAD 286
P GPA GP AG P +P + PG G PG G PG P P+
Sbjct: 622 PGPAGPAGERGEQGP-AGSP-----GFQGLPGPAGPPGE-AGKPGEQGVPGDLGAPGPSG 674
Query: 287 STNSSDNIYTMINPVPPGGSRSNFPMG-PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPK 345
+ PPG + G PG+DG G G GS G+ + G+P
Sbjct: 675 ARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGA---PGAPGSQGAPGLQGMP- 730
Query: 346 NSPNNISGISNPPGTPRDDGELGGN 370
+G+ P G D G G +
Sbjct: 731 -GERGAAGLPGPKGDRGDAGPKGAD 754
Score = 67.8 bits (164), Expect = 2e-11
Identities = 61/188 (32%), Positives = 75/188 (39%), Gaps = 28/188 (14%)
Query: 106 PPNDGMPGGPIPPGFF--QGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPP 163
P DG PG G GPPG+ +P A P P P+ G + P GP P
Sbjct: 1024 PGRDGSPGAKGDRGETGPAGPPGAPGAPGA-PGPVGPAGKSGDRGET--GPAGPAGPVGP 1080
Query: 164 IRMGNQPPGGVPGTQPLLPNSMDPTRQQG------HPNMGGSMQRMNPPRGMGPMGPGPQ 217
+ G + P G G + T +QG H G PP G GP
Sbjct: 1081 V--GARGPAGPQGPR----GDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGA 1134
Query: 218 NYGSGMRPPPNSLG-PAMPGINMGPG-AGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGP 275
+ +G R PP S G P G+N PG G P P + ++ P VGPPG GP
Sbjct: 1135 SGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGP---------VGPPGPPGP 1185
Query: 276 PGTPIMPS 283
PG P PS
Sbjct: 1186 PGPPGPPS 1193
Score = 65.5 bits (158), Expect = 8e-11
Identities = 85/302 (28%), Positives = 101/302 (33%), Gaps = 68/302 (22%)
Query: 109 DGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGN 168
D P GP +G PGS P + P P + G +P G P P GN
Sbjct: 279 DAGPAGP------KGEPGS-PGENGAPGQMGPRGLPGERGRP-------GAPGPAGARGN 324
Query: 169 QPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGP-GPQNYGSGMRPPP 227
G G P P G P G+ P GP G GPQ G+R P
Sbjct: 325 DGATGAAGP----PGPTGPAGPPGFPGAVGAKGEAGP---QGPRGSEGPQ----GVRGEP 373
Query: 228 NSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPG-----TYVGPPGGGGPP------ 276
GPA G P AN P + +PG GP G GGPP
Sbjct: 374 GPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNS 433
Query: 277 GTPIMPSPADSTNSSDNIYTMINPVPPG--------GSR-----SNFP------MGPGSD 317
G P P T + + PPG G+R + P GPGS
Sbjct: 434 GEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSR 493
Query: 318 GPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPN-----------NISGISNPPGTPRDDGE 366
G G G P G GS G PK SP G++ PG+P DG+
Sbjct: 494 GFPGADGVAGPKGPAGERGSPGPAG-PKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGK 552
Query: 367 LG 368
G
Sbjct: 553 TG 554
Score = 53.5 bits (127), Expect = 3e-07
Identities = 64/233 (27%), Positives = 76/233 (32%), Gaps = 31/233 (13%)
Query: 105 IPPNDGMPG--GPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRP 162
+P G PG GP +GPPG P PP P ++ SP G P
Sbjct: 975 LPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEG--SPGRDGSPGA 1032
Query: 163 PIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSG 222
G P G PG P P + P G G P GP+GP +G
Sbjct: 1033 KGDRGETGPAGPPGA-PGAPGAPGPV---GPAGKSGDRGETGPAGPAGPVGPVGARGPAG 1088
Query: 223 MRPPPNSLGPAMP----GINMGPG----AGRPWPNPNSANSIPYSSSSPGTYVGPPGGG- 273
+ P G GI G G P P + P +S P GPPG
Sbjct: 1089 PQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAG 1148
Query: 274 --------GPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDG 318
G PG P P T + + P PPG P GP S G
Sbjct: 1149 APGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPG------PPGPPSAG 1195
Score = 52.8 bits (125), Expect = 5e-07
Identities = 76/274 (27%), Positives = 98/274 (35%), Gaps = 71/274 (25%)
Query: 125 PGSQPSPHAQPPPHNPSSMMGPHSQPFMS---PRYAGGPRPPIRMGNQPPG--GVPGTQP 179
PG++ P + P P P Q P+ GPR P R PPG G+PG QP
Sbjct: 82 PGAEV-PEGECCPVCPDGSESPTDQETTGVEGPKGDTGPRGP-RGPAGPPGRDGIPG-QP 138
Query: 180 LLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQ-NYGSGMRPPPNSLGPAMPGIN 238
LP P G P +GG+ PQ +YG + ++ G ++PG
Sbjct: 139 GLPGPPGPPGPPGPPGLGGNF--------------APQLSYGYDEK---STGGISVPG-P 180
Query: 239 MGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMI 298
MGP R P GPPG GP G P +S +
Sbjct: 181 MGPSGPRGLP-------------------GPPGAPGPQGFQGPPGEPGEPGASGPMGPRG 221
Query: 299 NPVPPG----GSRSNFPMGPGSDGPMG-----------GMGGMEPHH----MNGSLGSGD 339
P PPG + P PG GP G G+ GM+ H ++G+ G
Sbjct: 222 PPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAG 281
Query: 340 IDGLPKNSP-----NNISGISNPPGTPRDDGELG 368
G PK P N G P G P + G G
Sbjct: 282 PAG-PKGEPGSPGENGAPGQMGPRGLPGERGRPG 314
Score = 40.0 bits (92), Expect = 0.004
Identities = 35/110 (31%), Positives = 39/110 (35%), Gaps = 26/110 (23%)
Query: 122 QGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPG--GVPGTQP 179
QGPPG SP Q PS GP GPR P PG G PG
Sbjct: 1117 QGPPGPPGSPGEQ----GPSGASGP-----------AGPRGP-------PGSAGAPGKDG 1154
Query: 180 L--LPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPP 227
L LP + P +G G + PP GP GP + P P
Sbjct: 1155 LNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFSFLPQP 1204
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 84.3 bits (207), Expect = 2e-16
Identities = 97/309 (31%), Positives = 110/309 (35%), Gaps = 54/309 (17%)
Query: 99 SPVLGNIP-PNDGMPGGPIPPGFFQGPPGSQ----------PSPHAQPPPHNPSSMMGPH 147
+P+LG P P G P IP GF Q P Q P P Q P P MGP
Sbjct: 580 TPLLGPQPFPGQG-PMSQIPQGFQQPHPSQQMPMNMAQMGPPGPQGQFRPPGPQGQMGPQ 638
Query: 148 SQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPR 207
P + GG P MG Q P G P P + P Q HP G + PP
Sbjct: 639 GPPL----HQGGGGPQGFMGPQGPQGPPQGLPRPQDMHGPQGMQRHPGPHGPLGPQGPPG 694
Query: 208 GMGPMG----------PGPQNYGSGMRP--PPNSLGPAMP----GINMGPG----AGRPW 247
G G PGPQ + P P LGP P G+ PG G P
Sbjct: 695 PQGSSGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLGPQGPPGTQGMQGPPGPRGMQGPPH 754
Query: 248 PN-----PNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPA-DSTNSSDNIYTMINPV 301
P+ P S S P + P G GPPG PA M P
Sbjct: 755 PHGIQGGPGSQGIQGPVSQGPLMGLNPRGMQGPPGPRENQGPAPQGMIMGHPPQEMRGPH 814
Query: 302 PPGGSRSNFPM---GP----GSDG--PMGGMGGMEPHHMNGSLGSGDIDGLPKNS--PNN 350
PPGG + P GP G G P G M G P + G GS G P+ S P
Sbjct: 815 PPGGLLGHGPQEMRGPQEIRGMQGPPPQGSMLG-PPQELRGPPGSQSQQGPPQGSLGPPP 873
Query: 351 ISGISNPPG 359
G+ PPG
Sbjct: 874 QGGMQGPPG 882
Score = 74.3 bits (181), Expect = 2e-13
Identities = 77/245 (31%), Positives = 93/245 (37%), Gaps = 35/245 (14%)
Query: 134 QPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGH 193
QPPP + + ++GP QPF GP I G Q P P Q +P +M Q G
Sbjct: 573 QPPPSSGTPLLGP--QPFPGQ----GPMSQIPQGFQQPH--PSQQ--MPMNM---AQMGP 619
Query: 194 PNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSA 253
P G + P MGP GP P + G G P +GP P GP G P P
Sbjct: 620 PGPQGQFRPPGPQGQMGPQGP-PLHQGGG--GPQGFMGPQGP---QGPPQG--LPRPQDM 671
Query: 254 NSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPAD--STNSSDNIYTMINPVPPGGSRSNF- 310
+ PG + GP G GPPG P I P P G + +
Sbjct: 672 HGPQGMQRHPGPH-GPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLG 730
Query: 311 PMGP-------GSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSP---NNISGISNPPGT 360
P GP G GP G G PH + G GS I G P N G+ PPG
Sbjct: 731 PQGPPGTQGMQGPPGPRGMQGPPHPHGIQGGPGSQGIQGPVSQGPLMGLNPRGMQGPPGP 790
Query: 361 PRDDG 365
+ G
Sbjct: 791 RENQG 795
Score = 62.0 bits (149), Expect = 9e-10
Identities = 77/245 (31%), Positives = 87/245 (35%), Gaps = 40/245 (16%)
Query: 106 PPNDGMPGGPIPPGFFQGPPGSQ--PSPHAQPPPH--NPSSMMGPHSQPFMSPRYAGGP- 160
P GM G P P G QG PGSQ P +Q P NP M GP PR GP
Sbjct: 744 PGPRGMQGPPHPHGI-QGGPGSQGIQGPVSQGPLMGLNPRGMQGPPG-----PRENQGPA 797
Query: 161 -------RPPIRM-GNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPM 212
PP M G PPGG+ G P R P GSM + PP+ +
Sbjct: 798 PQGMIMGHPPQEMRGPHPPGGLLGHGPQEMRGPQEIRGMQGPPPQGSM--LGPPQELR-- 853
Query: 213 GPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNP-----NSANSIPY-SSSSPGTY 266
GP S PP SLGP G GP + NP S IP+ +P
Sbjct: 854 --GPPGSQSQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPIPFQQQKTPLLG 911
Query: 267 VGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGM 326
GP G P P I P+ PG GPG + G G
Sbjct: 912 DGPRAPFNQEGQSTGPPPLIPGLGQQGAQGRIPPLNPG-------QGPGPN--KGDSRGP 962
Query: 327 EPHHM 331
HHM
Sbjct: 963 PNHHM 967
Score = 51.2 bits (121), Expect = 2e-06
Identities = 41/128 (32%), Positives = 49/128 (38%), Gaps = 23/128 (17%)
Query: 106 PPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGP-HSQPFMSPRYAGGPRPPI 164
PP + GP P G QGPPG Q Q P P GP Q +P GPR P
Sbjct: 864 PPQGSL--GPPPQGGMQGPPGPQGQ---QNPARGPHPSQGPIPFQQQKTPLLGDGPRAPF 918
Query: 165 RMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMR 224
Q G PL+P G G + +NP +G GP N G
Sbjct: 919 NQEGQS----TGPPPLIPG-------LGQQGAQGRIPPLNPGQGPGP------NKGDSRG 961
Query: 225 PPPNSLGP 232
PP + +GP
Sbjct: 962 PPNHHMGP 969
Score = 38.1 bits (87), Expect = 0.014
Identities = 65/272 (23%), Positives = 92/272 (33%), Gaps = 56/272 (20%)
Query: 89 FHDYSAAAAPSPVL---------GNIPP-NDGMPGGPI------PPGFFQGPPGSQPSPH 132
F+ + P P++ G IPP N G GP PP GP +
Sbjct: 918 FNQEGQSTGPPPLIPGLGQQGAQGRIPPLNPGQGPGPNKGDSRGPPNHHMGPMSERRHEQ 977
Query: 133 AQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQG 192
+ P H GP PF + G PP R G P ++ P+ P ++ G
Sbjct: 978 SGGPEH------GPERGPFRGGQDCRG--PPDRRGPHPDFPDDFSR---PDDFHPDKRFG 1026
Query: 193 H-----PNMGGSMQRMNPPRGMGPMGPGPQNY-----GSG---MRPPPNSLGPAMPGINM 239
H GG + + R GP P P ++ G G R PP + PG
Sbjct: 1027 HRLREFEGRGGPLPQEEKWRRGGPGPPFPPDHREFSEGDGRGAARGPPGAWEGRRPGDER 1086
Query: 240 GPGAGRPWPNPNSANSIPYSSSSPGTYVG---PPGGGGPPGTPIMPSPADSTNSSDNIYT 296
P P + +P + G P G G PG P P ++ ++S+
Sbjct: 1087 FPRDPED-PRFRGRREESFRRGAPPRHEGRAPPRGRDGFPG-PEDFGPEENFDASEE--- 1141
Query: 297 MINPVPPGGSRSNFPMGPGSDGPMGGMGGMEP 328
+R G G P GG G+ P
Sbjct: 1142 --------AARGRDLRGRGRGTPRGGRKGLLP 1165
Score = 37.4 bits (85), Expect = 0.023
Identities = 50/170 (29%), Positives = 67/170 (39%), Gaps = 26/170 (15%)
Query: 154 PRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMG---GSMQRMNPPRGMG 210
PR+ GG +P GN+ PG PG + + D R P+ G S +R + +GM
Sbjct: 1171 PRFEGGRKPDSWDGNREPG--PGHE----HFRDTPRPDHPPHDGHSPASRERSSSLQGMD 1224
Query: 211 ----PMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGT- 265
P P + G G P P + G G GR P P A +P S S
Sbjct: 1225 MASLPPRKRPWHDGPGTSEHREMEAPGGPSEDRG-GKGRGGPGP--AQRVPKSGRSSSLD 1281
Query: 266 ------YVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPP--GGSR 307
Y GGPPG+ PS + S+ + +N PP G SR
Sbjct: 1282 GEHHDGYHRDEPFGGPPGSG-TPSRGGRSGSNWGRGSNMNSGPPRRGASR 1330
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 84.0 bits (206), Expect = 2e-16
Identities = 87/309 (28%), Positives = 105/309 (33%), Gaps = 37/309 (11%)
Query: 100 PVLGNIPPNDGMPG--GPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGP-----HSQPFM 152
P L P + G+PG G + +GPPG P P P P+ GP P
Sbjct: 1053 PGLRGFPGDRGLPGPVGALGLKGNEGPPGP-PGPAGSPGERGPAGAAGPIGIPGRPGPQG 1111
Query: 153 SPRYAGGPRPPIRMGNQPPGGVPGTQ-PL-LPNSMDPTRQQGHPNMGGSMQRMNPPRGMG 210
P AG P G Q P G G Q P+ LP P G P G + P G
Sbjct: 1112 PPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPV---GPPGEDGDKGEIGEPGQKG 1168
Query: 211 PMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPP 270
G G + PP GP P GP P P + G G P
Sbjct: 1169 SKGD------KGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPR-GFP 1221
Query: 271 GGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGG-SRSNFPMGPGSDGPMGGMGGMEPH 329
G GP G +P P + ++ M P PPG S P G GP GG+G
Sbjct: 1222 GPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAV 1281
Query: 330 HMNGSLGSGDIDGLP----------------KNSPNNISGISNPPGTPRDDGELGGNFLH 373
G G GLP ++ P+ +G P G P DDG G
Sbjct: 1282 GEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPV 1341
Query: 374 SFQNDNYSP 382
F D P
Sbjct: 1342 GFPGDPGPP 1350
Score = 79.3 bits (194), Expect = 5e-15
Identities = 88/288 (30%), Positives = 105/288 (36%), Gaps = 39/288 (13%)
Query: 110 GMPG--GPIPPGFFQGPPG-SQPSPHAQPP-PHNPSSMMGPHSQPFMSPRYAGGPRPPIR 165
G+PG GP P +G G S PS A PP P P GP P + G P PP
Sbjct: 1294 GLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPG-PVGFPGDPGPPGE 1352
Query: 166 MGNQPPGGVPGT-----QPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYG 220
G G PG +P S PT G P G + PP GP G +
Sbjct: 1353 PGPAGQDGPPGDKGDDGEPGQTGSPGPT---GEPGPSGPPGKRGPPGPAGPEGRQGEKGA 1409
Query: 221 ---SGMRPPPNSLGP----AMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGG 273
+G+ PP GP PG GP R P P +P SPG GPPG
Sbjct: 1410 KGEAGLEGPPGKTGPIGPQGAPG-KPGPDGLRGIPGPVGEQGLP---GSPGP-DGPPGPM 1464
Query: 274 GPPGTPIM--PSPADSTNSSDNIYTMINPVPPGGSRSN--FPMGPGSDGPMGGMGGMEPH 329
GPPG P + S + +I P G + + P GS GP G G P
Sbjct: 1465 GPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPS 1524
Query: 330 HMNGSLGSGDIDGLP----------KNSPNNISGISNPPGTPRDDGEL 367
G G + G P P +G PPG P GE+
Sbjct: 1525 GPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAGHPGPPGPPGPPGEV 1572
Score = 75.1 bits (183), Expect = 1e-13
Identities = 91/312 (29%), Positives = 110/312 (35%), Gaps = 62/312 (19%)
Query: 109 DGMPG--GPIPPGFFQGPPGSQPSPHAQ--PPPHN---PSSMMGPHSQPFMS-------- 153
DG PG G + P GPPG Q +P AQ P P P GP +P +
Sbjct: 702 DGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGP 761
Query: 154 PRYAGGPRPPIRMGNQ-PPG-----GVPGTQPL--------LPNSMDPTRQQGHPNMGGS 199
P + G PP G Q PPG G PG + + L + + G P G
Sbjct: 762 PGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGD 821
Query: 200 MQ------RMNPPRGMGPMGP-GPQNYGS-----GMRPPPNSLG----PAMPGI--NMGP 241
M + PP G GP GP+ G G PP G P +PG GP
Sbjct: 822 MGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGP 881
Query: 242 GAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPV 301
+P AN +PG GP G GP G P T P
Sbjct: 882 KGSIGFPGFPGANGEKGGRGTPGK-PGPRGQRGPTGPRGERGPRGITG---------KPG 931
Query: 302 PPGGSRSNFPMGP----GSDGPMGGMGGMEPHHMNGSLGSGDIDGLP-KNSPNNISGISN 356
P G S + P GP G +GP G G P G G + G P + G +
Sbjct: 932 PKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTG 991
Query: 357 PPGTPRDDGELG 368
PPG P G G
Sbjct: 992 PPGPPGVVGPQG 1003
Score = 71.6 bits (174), Expect = 1e-12
Identities = 81/307 (26%), Positives = 101/307 (32%), Gaps = 80/307 (26%)
Query: 122 QGPPG--SQPSPHAQPPPHNPSSMMGPHSQPFM-------SPRYAGGPRPPIRMGNQPPG 172
QGPPG P QP P GP Q + PR G P PP +G Q
Sbjct: 1176 QGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPR--GFPGPPGPVGLQ--- 1230
Query: 173 GVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLG- 231
G+PG P ++G G + +M PP GP GP G + PP +G
Sbjct: 1231 GLPG----------PPGEKGET---GDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGN 1277
Query: 232 ---------------PAMPGINMGPG----------------AGRPWPNPNSANSIPYSS 260
P +PG PG AG P P + P S
Sbjct: 1278 PGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGS 1337
Query: 261 SSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPM 320
P + G PG G PG P +P P G + P PG GP
Sbjct: 1338 PGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGP--PGKRGPP 1395
Query: 321 GGMGGMEPHHMNGSLGSGDIDGLP-------------KNSPNNISGISNP------PGTP 361
G G G+ G ++G P K P+ + GI P PG+P
Sbjct: 1396 GPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSP 1455
Query: 362 RDDGELG 368
DG G
Sbjct: 1456 GPDGPPG 1462
Score = 69.7 bits (169), Expect = 4e-12
Identities = 64/194 (32%), Positives = 81/194 (41%), Gaps = 30/194 (15%)
Query: 109 DGMPG--GPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRM 166
+G PG GPI P QG PG +P P + GP + + P G PP M
Sbjct: 1416 EGPPGKTGPIGP---QGAPG-------KPGPDGLRGIPGPVGEQGL-PGSPGPDGPPGPM 1464
Query: 167 GNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG----PGPQNYGSG 222
G P G+PG L P ++GHP + G + PP G G PGPQ SG
Sbjct: 1465 G---PPGLPG----LKGDSGPKGEKGHPGLIGLI---GPPGEQGEKGDRGLPGPQG-SSG 1513
Query: 223 MRPPPNSLGPAMPGINMGPGA--GRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPI 280
+ GP+ P GP G P P +S P + GPPG GPPG I
Sbjct: 1514 PKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAGHPGPPGPPGPPGEVI 1573
Query: 281 MPSPADSTNSSDNI 294
P P ++ + NI
Sbjct: 1574 QPLPIQASRTRRNI 1587
Score = 69.3 bits (168), Expect = 6e-12
Identities = 76/267 (28%), Positives = 93/267 (34%), Gaps = 55/267 (20%)
Query: 106 PPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIR 165
PP + P GP P F GP G P P +P G + + G P PP
Sbjct: 944 PPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHP----GQRGETGFQGK-TGPPGPPGV 998
Query: 166 MGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG----PGPQNYGS 221
+G Q P G G P ++GHP G P G G PGP
Sbjct: 999 VGPQGPTGETG----------PMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGL-- 1046
Query: 222 GMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIM 281
P GP PG+ PG R P P A + + GPPG GP G+P
Sbjct: 1047 -----PGKDGP--PGLRGFPG-DRGLPGPVGALGLKGNE-------GPPGPPGPAGSPGE 1091
Query: 282 PSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDID 341
PA + P+ P PG GP G G G G D
Sbjct: 1092 RGPAGAA----------GPI-------GIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRD 1134
Query: 342 GLPKNSPNNISGISNPPGTPRDDGELG 368
GL P + G + P G P +DG+ G
Sbjct: 1135 GL--QGPVGLPGPAGPVGPPGEDGDKG 1159
Score = 67.4 bits (163), Expect = 2e-11
Identities = 84/291 (28%), Positives = 102/291 (35%), Gaps = 58/291 (19%)
Query: 110 GMPGGPIPPGF--FQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMG 167
G PG PPG +G PG P P + GP P AG P R G
Sbjct: 568 GRPGPVGPPGSGGLKGEPGDVG-------PQGPRGVQGP-------PGPAGKPGRRGRAG 613
Query: 168 NQPPGGVPG-TQPLLPNSMDPTR----QQGHPNMGGSMQRMNPP-----RG----MGPMG 213
+ G+PG T P D ++GH G PP RG +GP G
Sbjct: 614 SDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGERGDDGEVGPRG 673
Query: 214 ----PGPQNYGSGMRPPPNSLGPAMPGI-----------NMGPGAGRPWPNPNSANSIPY 258
PGP+ G + PP GP PG+ N+GP G P P N
Sbjct: 674 LPGEPGPRGL-LGPKGPPGPPGP--PGVTGMDGQPGPKGNVGP-QGEPGPPGQQGNPGAQ 729
Query: 259 SSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGP-GSD 317
P +GPPG GP G P +P + + P GG P GP G
Sbjct: 730 GLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYP 789
Query: 318 GPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
GP G G + G+ G DG P G G D GE+G
Sbjct: 790 GPRGVKGADGIRGLKGTKGEKGEDGFP--------GFKGDMGIKGDRGEIG 832
Score = 63.2 bits (152), Expect = 4e-10
Identities = 86/331 (25%), Positives = 109/331 (32%), Gaps = 73/331 (22%)
Query: 94 AAAAPSPVLGNIPPNDGMPGGPIPPGFF-----------QGPPGSQPSPHAQPPPHNPSS 142
A P ++ P +G G P PPG +GPPG P A P P +
Sbjct: 459 AIIEPGMLIEGPPGPEGPAGLPGPPGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGT 518
Query: 143 MM---------------GPHSQPFMSPRYA---------GGPRPPIRMGNQP-PGGVPGT 177
M+ GP S A GP P+ + +P P G PG+
Sbjct: 519 MLMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGS 578
Query: 178 QPLLPNSMD-----PTRQQGHPNMGGSMQR-----MNPPRGM-GPMGP-GPQNYG----- 220
L D P QG P G R + RGM G GP G + +
Sbjct: 579 GGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGL 638
Query: 221 ---SGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPG 277
G R P GP P + G P P P +GP G GPPG
Sbjct: 639 PGEKGHRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPGEP----GPRGLLGPKGPPGPPG 694
Query: 278 TPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGS 337
P + N+ P PPG + PG+ G G G + P G LG
Sbjct: 695 PPGVTGMDGQPGPKGNVGPQGEPGPPGQQGN-----PGAQGLPGPQGAIGPPGEKGPLGK 749
Query: 338 GDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
+ G+P G PPG P +G G
Sbjct: 750 PGLPGMP--------GADGPPGHPGKEGPPG 772
Score = 63.2 bits (152), Expect = 4e-10
Identities = 77/268 (28%), Positives = 89/268 (33%), Gaps = 49/268 (18%)
Query: 123 GPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLP 182
GPPG P + P P GP+ P GP P G + GVPG P P
Sbjct: 832 GPPG----PRGEDGPEGPKGRGGPNGDP--------GPLGP--PGEKGKLGVPGL-PGYP 876
Query: 183 NSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG-PGPQNYGSGMRPPPNSLGPAMP-GINMG 240
P G P G+ G G G PGP+ G R P G P GI
Sbjct: 877 GRQGPKGSIGFPGFPGANGEKG---GRGTPGKPGPR----GQRGPTGPRGERGPRGIT-- 927
Query: 241 PGAGRPWPNPNSANS---------IPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSS 291
G+P P NS P P + GP G GPPG +P +
Sbjct: 928 ---GKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGET 984
Query: 292 DNIYTMINPVPPGGSRSNFPMG----------PGSDGPMGGMGGMEPHHMNGSLGSGDID 341
P PPG P G PG GP G G G+ G
Sbjct: 985 GFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPA 1044
Query: 342 GLP-KNSPNNISGISNPPGTPRDDGELG 368
GLP K+ P + G G P G LG
Sbjct: 1045 GLPGKDGPPGLRGFPGDRGLPGPVGALG 1072
Score = 44.3 bits (103), Expect = 2e-04
Identities = 54/194 (27%), Positives = 66/194 (34%), Gaps = 34/194 (17%)
Query: 204 NPPRGMGPMGPG-PQNYGS---GMRPPPNSLGPAMPGINMGPGA---GRPWPNPNSANSI 256
+P +GPG P N + G+ P G + PG G P P +
Sbjct: 422 DPTSSPSEIGPGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAGLPG 481
Query: 257 PYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGP-- 314
P + P VG PG GPPG P +P AD M+ P GG GP
Sbjct: 482 PPGTMGPTGQVGDPGERGPPGRPGLPG-ADGLPGPPGTMLML-PFRFGGGGDAGSKGPMV 539
Query: 315 -------------------GSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKN-SPNNISGI 354
G GPMG G P G GSG + G P + P G+
Sbjct: 540 SAQESQAQAILQQARLALRGPAGPMGLTGRPGP---VGPPGSGGLKGEPGDVGPQGPRGV 596
Query: 355 SNPPGTPRDDGELG 368
PPG G G
Sbjct: 597 QGPPGPAGKPGRRG 610
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 84.0 bits (206), Expect = 2e-16
Identities = 84/311 (27%), Positives = 110/311 (35%), Gaps = 50/311 (16%)
Query: 98 PSPVLGNI-PPND-GMPGGPIPPGFFQGPPG--------------SQPSPHAQPPPHNPS 141
P +GN+ PP + G PG PG QG PG QP P P P+
Sbjct: 1113 PPGGVGNLGPPGEKGEPGESGSPGI-QGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPT 1171
Query: 142 SMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGT-----QPLLPNSMDPTRQQGHPNM 196
GP P + G P PP G + G G +P P S PT + G P
Sbjct: 1172 GDDGPKGNPG-PVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGP 1230
Query: 197 GGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSI 256
G P G G G G + P ++G +GP P P+ +
Sbjct: 1231 LGKRGPAGSPGSEGRQG------GKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGL 1284
Query: 257 PYSSSSPGT-----YVGPPGGGGPPGTPIMPSPADSTNSSDN--IYTMINPVPPGGSRSN 309
P S G GPPG GPPG P + A + + + +I P G + +
Sbjct: 1285 PGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGD 1344
Query: 310 FPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP-------------KNSPNNISGISN 356
+ PG G G G M +G +G G GLP P G+
Sbjct: 1345 RGL-PGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQG 1403
Query: 357 PPGTPRDDGEL 367
PPG P GE+
Sbjct: 1404 PPGHPGPPGEV 1414
Score = 71.6 bits (174), Expect = 1e-12
Identities = 86/303 (28%), Positives = 107/303 (35%), Gaps = 65/303 (21%)
Query: 109 DGMPG--GPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRM 166
DG PG G I +G G P + P P GP G P PP M
Sbjct: 655 DGFPGFKGDIGVKGDRGEVGV-PGSRGEDGPEGPKGRTGP----------TGDPGPPGLM 703
Query: 167 GNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGS--------MQRMNPPRG-MGPMGP--- 214
G + GVPG P P P G P G+ + + PRG GP GP
Sbjct: 704 GEKGKLGVPGL-PGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQ 762
Query: 215 -GPQ-----------NYGSGMRPPPNSLG-PAMPGINMGPGAGRPWPNPNSANSIPYSSS 261
GP+ + G G PP G P G N PG P P P + +P
Sbjct: 763 RGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGP-PGPPGKDGLPGHPG 821
Query: 262 SPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPG--------------GSR 307
G VG G GPPG P + P + + + +P PPG G++
Sbjct: 822 QRGE-VGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTK 880
Query: 308 SN--FPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDG 365
+ P PG DGP G G + G+ G + G G S PPG G
Sbjct: 881 GDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKG--------NEGPSGPPGPAGSPG 932
Query: 366 ELG 368
E G
Sbjct: 933 ERG 935
Score = 68.2 bits (165), Expect = 1e-11
Identities = 78/279 (27%), Positives = 90/279 (32%), Gaps = 32/279 (11%)
Query: 110 GMPGGPIPPGFFQ--------GPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPR 161
G+PG PPG G PG Q H P GP P P AG
Sbjct: 983 GLPGPAGPPGVAGEDGDKGEVGDPG-QKGTKGNKGEHGPPGPPGPIG-PVGQPGAAGADG 1040
Query: 162 PPIRMGNQPPGGVPGTQPL--LPNSMDPTRQQGHPNMGGSMQR------MNPPRGMGPMG 213
P G Q G G + P QG P G M PP GP G
Sbjct: 1041 EPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRG 1100
Query: 214 PGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSS--SSPGTYVGPPG 271
P N G + PP +G N+GP + P + + I P G G
Sbjct: 1101 PAGPNGADGPQGPPGGVG------NLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKG 1154
Query: 272 GGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHM 331
G PG P P P T NP P G P PG GP G G
Sbjct: 1155 ESGQPGEPGPPGPKGPTGDDG---PKGNPGPVGFPGD--PGPPGEGGPRGQDGAKGDRGE 1209
Query: 332 NGSLGS-GDIDGLPKNSPNNISGISNPPGTPRDDGELGG 369
+G G G +N P G P G+P +G GG
Sbjct: 1210 DGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGG 1248
Score = 67.4 bits (163), Expect = 2e-11
Identities = 78/287 (27%), Positives = 97/287 (33%), Gaps = 53/287 (18%)
Query: 122 QGPPG-----SQPSPHAQPP---------------PHNPSSMMGPHSQPFMSPRYA---- 157
+GPPG +P P QP P P + GP + R
Sbjct: 400 RGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGA 459
Query: 158 -GGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGP-- 214
G P P G++ G+PG LP ++GH G+ PP G G
Sbjct: 460 RGMPGDPGVKGDRGFDGLPG----LPG------EKGHRGDTGAQGLPGPPGEDGERGDDG 509
Query: 215 --GPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGG 272
GP+ G P LGP P GP R P P S P GPPG
Sbjct: 510 EIGPRGL-PGESGPRGLLGPKGPPGIPGPPGVRGMDGPQG----PKGSLGPQGEPGPPGQ 564
Query: 273 GGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMG-PGSDGPMGGMGGMEPHHM 331
G PGT +P P + P PG S+ P G PG +GP G G P
Sbjct: 565 QGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGP 624
Query: 332 NGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQND 378
G LG P + G+ G GE G + F+ D
Sbjct: 625 QGPLG--------YPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGD 663
Score = 65.5 bits (158), Expect = 8e-11
Identities = 80/280 (28%), Positives = 103/280 (36%), Gaps = 51/280 (18%)
Query: 106 PPND-GMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSM--------MGPHSQP-FMSPR 155
PP + G+PG P P F GP G P P +P GP P + P+
Sbjct: 786 PPGERGLPG-PQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQ 844
Query: 156 YAGGPRPPI-RMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGP 214
A G P+ G+ P G PG Q L P + +G P PP G GP
Sbjct: 845 GAAGETGPMGERGHPGPPGPPGEQGL-PGTAGKEGTKGDPG---------PPGAPGKDGP 894
Query: 215 GPQNYGSGMRPPPNSLGPAMPGINMGPGA-GRPWPNPNSANSIPYSSSSPGTYVGPPGGG 273
+G+R P G +PG GPG G P+ P + SPG G G G
Sbjct: 895 ------AGLRGFPGERG--LPGTAGGPGLKGNEGPS-----GPPGPAGSPGER-GAAGSG 940
Query: 274 GPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGP----GSDGPMGGMGGMEPH 329
GP G P P P ++ G P+GP G GP+G G P
Sbjct: 941 GPIGPPGRPGPQGPPGAAGE---------KGVPGEKGPIGPTGRDGVQGPVGLPGPAGPP 991
Query: 330 HMNGSLG-SGDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
+ G G G++ + G PPG P G +G
Sbjct: 992 GVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVG 1031
Score = 64.3 bits (155), Expect = 2e-10
Identities = 85/322 (26%), Positives = 106/322 (32%), Gaps = 71/322 (22%)
Query: 106 PPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHN---PSS--MMGPHSQPFMSP-RY--A 157
PP P G I P QG PG P + PP P S GP M P R+
Sbjct: 314 PPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSG 373
Query: 158 GGPRPPIRMGNQPPGGVPGTQPLL-----PNSMDPTRQQGHPNMGGSMQRMNPPRGMGPM 212
GG + P+ + Q L P M T + G GS +GP
Sbjct: 374 GGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQ 433
Query: 213 GP-GPQNYGSGMRPPPNSLG-------------PAMPGI-----------------NMGP 241
GP GPQ G+ PP G P PG+ + G
Sbjct: 434 GPRGPQ----GLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGD 489
Query: 242 GAGRPWPNPNSAN------------SIPYSSSSPGTY--VGPPGGGGPPGTPIMPSPADS 287
+ P P + +P S G GPPG GPPG M P
Sbjct: 490 TGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGP 549
Query: 288 TNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP-KN 346
S + P PPG + PG+ G G G + PH G G + G+P +
Sbjct: 550 KGS---LGPQGEPGPPGQQGT-----PGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSD 601
Query: 347 SPNNISGISNPPGTPRDDGELG 368
P G PPGT + G G
Sbjct: 602 GPPGHPGKEGPPGTKGNQGPSG 623
Score = 53.1 bits (126), Expect = 4e-07
Identities = 71/249 (28%), Positives = 86/249 (34%), Gaps = 41/249 (16%)
Query: 97 APSPVLGNIPPND-------GMPGGPIPPGF--FQGPPGSQPSPHAQPP--PHNPSSMMG 145
+P P N PP G PG G +G PG+ +P P P P+ G
Sbjct: 1218 SPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPG 1277
Query: 146 PHSQPFMSPRYAGGPRPPIRMGNQPPGGV-PGTQPLLPNSMDPTRQQGHPNMGGSMQRMN 204
P + RP PPG V P P L ++GHP + G +
Sbjct: 1278 PDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLI---G 1334
Query: 205 PPRGMGPMG----PGPQNYGS--GMRPPPNSLGPAMPGINMGPGAGRPWP-NPNSANSIP 257
PP G G PGPQ G P + GP PG GP G P P P A
Sbjct: 1335 PPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPG---GP-PGLPGPAGPKGAKGAT 1390
Query: 258 YSSSSPGT--YVGPPGGGGPPGTPIMPSPADSTNSS------DNIYTMINPVPPGGSRSN 309
G GPPG GPPG I P P + + +P GG+
Sbjct: 1391 GPGGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGA--- 1447
Query: 310 FPMGPGSDG 318
PGS G
Sbjct: 1448 ----PGSPG 1452
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 84.0 bits (206), Expect = 2e-16
Identities = 84/311 (27%), Positives = 110/311 (35%), Gaps = 50/311 (16%)
Query: 98 PSPVLGNI-PPND-GMPGGPIPPGFFQGPPG--------------SQPSPHAQPPPHNPS 141
P +GN+ PP + G PG PG QG PG QP P P P+
Sbjct: 1092 PPGGVGNLGPPGEKGEPGESGSPGI-QGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPT 1150
Query: 142 SMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGT-----QPLLPNSMDPTRQQGHPNM 196
GP P + G P PP G + G G +P P S PT + G P
Sbjct: 1151 GDDGPKGNPG-PVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGP 1209
Query: 197 GGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSI 256
G P G G G G + P ++G +GP P P+ +
Sbjct: 1210 LGKRGPAGSPGSEGRQG------GKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGL 1263
Query: 257 PYSSSSPGT-----YVGPPGGGGPPGTPIMPSPADSTNSSDN--IYTMINPVPPGGSRSN 309
P S G GPPG GPPG P + A + + + +I P G + +
Sbjct: 1264 PGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGD 1323
Query: 310 FPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP-------------KNSPNNISGISN 356
+ PG G G G M +G +G G GLP P G+
Sbjct: 1324 RGL-PGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQG 1382
Query: 357 PPGTPRDDGEL 367
PPG P GE+
Sbjct: 1383 PPGHPGPPGEV 1393
Score = 71.6 bits (174), Expect = 1e-12
Identities = 86/303 (28%), Positives = 107/303 (35%), Gaps = 65/303 (21%)
Query: 109 DGMPG--GPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRM 166
DG PG G I +G G P + P P GP G P PP M
Sbjct: 634 DGFPGFKGDIGVKGDRGEVGV-PGSRGEDGPEGPKGRTGP----------TGDPGPPGLM 682
Query: 167 GNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGS--------MQRMNPPRG-MGPMGP--- 214
G + GVPG P P P G P G+ + + PRG GP GP
Sbjct: 683 GEKGKLGVPGL-PGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQ 741
Query: 215 -GPQ-----------NYGSGMRPPPNSLG-PAMPGINMGPGAGRPWPNPNSANSIPYSSS 261
GP+ + G G PP G P G N PG P P P + +P
Sbjct: 742 RGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGP-PGPPGKDGLPGHPG 800
Query: 262 SPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPG--------------GSR 307
G VG G GPPG P + P + + + +P PPG G++
Sbjct: 801 QRGE-VGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTK 859
Query: 308 SN--FPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDG 365
+ P PG DGP G G + G+ G + G G S PPG G
Sbjct: 860 GDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKG--------NEGPSGPPGPAGSPG 911
Query: 366 ELG 368
E G
Sbjct: 912 ERG 914
Score = 68.2 bits (165), Expect = 1e-11
Identities = 78/279 (27%), Positives = 90/279 (32%), Gaps = 32/279 (11%)
Query: 110 GMPGGPIPPGFFQ--------GPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPR 161
G+PG PPG G PG Q H P GP P P AG
Sbjct: 962 GLPGPAGPPGVAGEDGDKGEVGDPG-QKGTKGNKGEHGPPGPPGPIG-PVGQPGAAGADG 1019
Query: 162 PPIRMGNQPPGGVPGTQPL--LPNSMDPTRQQGHPNMGGSMQR------MNPPRGMGPMG 213
P G Q G G + P QG P G M PP GP G
Sbjct: 1020 EPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRG 1079
Query: 214 PGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSS--SSPGTYVGPPG 271
P N G + PP +G N+GP + P + + I P G G
Sbjct: 1080 PAGPNGADGPQGPPGGVG------NLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKG 1133
Query: 272 GGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHM 331
G PG P P P T NP P G P PG GP G G
Sbjct: 1134 ESGQPGEPGPPGPKGPTGDDG---PKGNPGPVGFPGD--PGPPGEGGPRGQDGAKGDRGE 1188
Query: 332 NGSLGS-GDIDGLPKNSPNNISGISNPPGTPRDDGELGG 369
+G G G +N P G P G+P +G GG
Sbjct: 1189 DGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGG 1227
Score = 67.4 bits (163), Expect = 2e-11
Identities = 78/287 (27%), Positives = 97/287 (33%), Gaps = 53/287 (18%)
Query: 122 QGPPG-----SQPSPHAQPP---------------PHNPSSMMGPHSQPFMSPRYA---- 157
+GPPG +P P QP P P + GP + R
Sbjct: 379 RGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGA 438
Query: 158 -GGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGP-- 214
G P P G++ G+PG LP ++GH G+ PP G G
Sbjct: 439 RGMPGDPGVKGDRGFDGLPG----LPG------EKGHRGDTGAQGLPGPPGEDGERGDDG 488
Query: 215 --GPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGG 272
GP+ G P LGP P GP R P P S P GPPG
Sbjct: 489 EIGPRGL-PGESGPRGLLGPKGPPGIPGPPGVRGMDGPQG----PKGSLGPQGEPGPPGQ 543
Query: 273 GGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMG-PGSDGPMGGMGGMEPHHM 331
G PGT +P P + P PG S+ P G PG +GP G G P
Sbjct: 544 QGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGP 603
Query: 332 NGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQND 378
G LG P + G+ G GE G + F+ D
Sbjct: 604 QGPLG--------YPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGD 642
Score = 65.5 bits (158), Expect = 8e-11
Identities = 80/280 (28%), Positives = 103/280 (36%), Gaps = 51/280 (18%)
Query: 106 PPND-GMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSM--------MGPHSQP-FMSPR 155
PP + G+PG P P F GP G P P +P GP P + P+
Sbjct: 765 PPGERGLPG-PQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQ 823
Query: 156 YAGGPRPPI-RMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGP 214
A G P+ G+ P G PG Q L P + +G P PP G GP
Sbjct: 824 GAAGETGPMGERGHPGPPGPPGEQGL-PGTAGKEGTKGDPG---------PPGAPGKDGP 873
Query: 215 GPQNYGSGMRPPPNSLGPAMPGINMGPGA-GRPWPNPNSANSIPYSSSSPGTYVGPPGGG 273
+G+R P G +PG GPG G P+ P + SPG G G G
Sbjct: 874 ------AGLRGFPGERG--LPGTAGGPGLKGNEGPS-----GPPGPAGSPGER-GAAGSG 919
Query: 274 GPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGP----GSDGPMGGMGGMEPH 329
GP G P P P ++ G P+GP G GP+G G P
Sbjct: 920 GPIGPPGRPGPQGPPGAAGE---------KGVPGEKGPIGPTGRDGVQGPVGLPGPAGPP 970
Query: 330 HMNGSLG-SGDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
+ G G G++ + G PPG P G +G
Sbjct: 971 GVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVG 1010
Score = 64.3 bits (155), Expect = 2e-10
Identities = 85/322 (26%), Positives = 106/322 (32%), Gaps = 71/322 (22%)
Query: 106 PPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHN---PSS--MMGPHSQPFMSP-RY--A 157
PP P G I P QG PG P + PP P S GP M P R+
Sbjct: 293 PPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSG 352
Query: 158 GGPRPPIRMGNQPPGGVPGTQPLL-----PNSMDPTRQQGHPNMGGSMQRMNPPRGMGPM 212
GG + P+ + Q L P M T + G GS +GP
Sbjct: 353 GGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQ 412
Query: 213 GP-GPQNYGSGMRPPPNSLG-------------PAMPGI-----------------NMGP 241
GP GPQ G+ PP G P PG+ + G
Sbjct: 413 GPRGPQ----GLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGD 468
Query: 242 GAGRPWPNPNSAN------------SIPYSSSSPGTY--VGPPGGGGPPGTPIMPSPADS 287
+ P P + +P S G GPPG GPPG M P
Sbjct: 469 TGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGP 528
Query: 288 TNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP-KN 346
S + P PPG + PG+ G G G + PH G G + G+P +
Sbjct: 529 KGS---LGPQGEPGPPGQQGT-----PGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSD 580
Query: 347 SPNNISGISNPPGTPRDDGELG 368
P G PPGT + G G
Sbjct: 581 GPPGHPGKEGPPGTKGNQGPSG 602
Score = 53.1 bits (126), Expect = 4e-07
Identities = 71/249 (28%), Positives = 86/249 (34%), Gaps = 41/249 (16%)
Query: 97 APSPVLGNIPPND-------GMPGGPIPPGF--FQGPPGSQPSPHAQPP--PHNPSSMMG 145
+P P N PP G PG G +G PG+ +P P P P+ G
Sbjct: 1197 SPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPG 1256
Query: 146 PHSQPFMSPRYAGGPRPPIRMGNQPPGGV-PGTQPLLPNSMDPTRQQGHPNMGGSMQRMN 204
P + RP PPG V P P L ++GHP + G +
Sbjct: 1257 PDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLI---G 1313
Query: 205 PPRGMGPMG----PGPQNYGS--GMRPPPNSLGPAMPGINMGPGAGRPWP-NPNSANSIP 257
PP G G PGPQ G P + GP PG GP G P P P A
Sbjct: 1314 PPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPG---GP-PGLPGPAGPKGAKGAT 1369
Query: 258 YSSSSPGT--YVGPPGGGGPPGTPIMPSPADSTNSS------DNIYTMINPVPPGGSRSN 309
G GPPG GPPG I P P + + +P GG+
Sbjct: 1370 GPGGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGA--- 1426
Query: 310 FPMGPGSDG 318
PGS G
Sbjct: 1427 ----PGSPG 1431
Score = 51.6 bits (122), Expect = 1e-06
Identities = 78/297 (26%), Positives = 97/297 (32%), Gaps = 58/297 (19%)
Query: 122 QGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPR--PPIRMGNQPPGGVPGTQP 179
Q P +Q SP QP + P SQ PR G + P + G PG +
Sbjct: 239 QQPHRAQRSPQQQPSRLHRPQNQEPQSQAAHGPRGLKGEKGEPAVLEPGMLVEGPPGPEG 298
Query: 180 LLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG----PGPQ--------NYGSG----- 222
+ P QG+P G PP G G PGP +GSG
Sbjct: 299 -PAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKG 357
Query: 223 --------------------MRPPPNSLG-PAMPGINMGPGAGRPWPNPNSANSIPYSSS 261
+R PP +G PG PG+ P S + P
Sbjct: 358 PVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGS--PGLKGESGDLGPQGPR 415
Query: 262 SPGTYVGPPGGGGPPGTP----IMPSPADSTNSSDNIYTMINPVP-PGGSRSN-----FP 311
P GPPG G G P D D + + +P G R + P
Sbjct: 416 GPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLP 475
Query: 312 MGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
PG DG G G + P + G G + G PK P GI PPG DG G
Sbjct: 476 GPPGEDGERGDDGEIGPRGLPGESGPRGLLG-PKGPP----GIPGPPGVRGMDGPQG 527
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 84.0 bits (206), Expect = 2e-16
Identities = 84/311 (27%), Positives = 110/311 (35%), Gaps = 50/311 (16%)
Query: 98 PSPVLGNI-PPND-GMPGGPIPPGFFQGPPG--------------SQPSPHAQPPPHNPS 141
P +GN+ PP + G PG PG QG PG QP P P P+
Sbjct: 1199 PPGGVGNLGPPGEKGEPGESGSPGI-QGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPT 1257
Query: 142 SMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGT-----QPLLPNSMDPTRQQGHPNM 196
GP P + G P PP G + G G +P P S PT + G P
Sbjct: 1258 GDDGPKGNPG-PVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGP 1316
Query: 197 GGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSI 256
G P G G G G + P ++G +GP P P+ +
Sbjct: 1317 LGKRGPAGSPGSEGRQG------GKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGL 1370
Query: 257 PYSSSSPGT-----YVGPPGGGGPPGTPIMPSPADSTNSSDN--IYTMINPVPPGGSRSN 309
P S G GPPG GPPG P + A + + + +I P G + +
Sbjct: 1371 PGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGD 1430
Query: 310 FPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP-------------KNSPNNISGISN 356
+ PG G G G M +G +G G GLP P G+
Sbjct: 1431 RGL-PGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQG 1489
Query: 357 PPGTPRDDGEL 367
PPG P GE+
Sbjct: 1490 PPGHPGPPGEV 1500
Score = 71.6 bits (174), Expect = 1e-12
Identities = 86/303 (28%), Positives = 107/303 (35%), Gaps = 65/303 (21%)
Query: 109 DGMPG--GPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRM 166
DG PG G I +G G P + P P GP G P PP M
Sbjct: 741 DGFPGFKGDIGVKGDRGEVGV-PGSRGEDGPEGPKGRTGP----------TGDPGPPGLM 789
Query: 167 GNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGS--------MQRMNPPRG-MGPMGP--- 214
G + GVPG P P P G P G+ + + PRG GP GP
Sbjct: 790 GEKGKLGVPGL-PGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQ 848
Query: 215 -GPQ-----------NYGSGMRPPPNSLG-PAMPGINMGPGAGRPWPNPNSANSIPYSSS 261
GP+ + G G PP G P G N PG P P P + +P
Sbjct: 849 RGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGP-PGPPGKDGLPGHPG 907
Query: 262 SPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPG--------------GSR 307
G VG G GPPG P + P + + + +P PPG G++
Sbjct: 908 QRGE-VGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTK 966
Query: 308 SN--FPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDG 365
+ P PG DGP G G + G+ G + G G S PPG G
Sbjct: 967 GDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKG--------NEGPSGPPGPAGSPG 1018
Query: 366 ELG 368
E G
Sbjct: 1019 ERG 1021
Score = 68.2 bits (165), Expect = 1e-11
Identities = 78/279 (27%), Positives = 90/279 (32%), Gaps = 32/279 (11%)
Query: 110 GMPGGPIPPGFFQ--------GPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPR 161
G+PG PPG G PG Q H P GP P P AG
Sbjct: 1069 GLPGPAGPPGVAGEDGDKGEVGDPG-QKGTKGNKGEHGPPGPPGPIG-PVGQPGAAGADG 1126
Query: 162 PPIRMGNQPPGGVPGTQPL--LPNSMDPTRQQGHPNMGGSMQR------MNPPRGMGPMG 213
P G Q G G + P QG P G M PP GP G
Sbjct: 1127 EPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRG 1186
Query: 214 PGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSS--SSPGTYVGPPG 271
P N G + PP +G N+GP + P + + I P G G
Sbjct: 1187 PAGPNGADGPQGPPGGVG------NLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKG 1240
Query: 272 GGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHM 331
G PG P P P T NP P G P PG GP G G
Sbjct: 1241 ESGQPGEPGPPGPKGPTGDDG---PKGNPGPVGFPGD--PGPPGEGGPRGQDGAKGDRGE 1295
Query: 332 NGSLGS-GDIDGLPKNSPNNISGISNPPGTPRDDGELGG 369
+G G G +N P G P G+P +G GG
Sbjct: 1296 DGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGG 1334
Score = 67.4 bits (163), Expect = 2e-11
Identities = 78/287 (27%), Positives = 97/287 (33%), Gaps = 53/287 (18%)
Query: 122 QGPPG-----SQPSPHAQPP---------------PHNPSSMMGPHSQPFMSPRYA---- 157
+GPPG +P P QP P P + GP + R
Sbjct: 486 RGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGA 545
Query: 158 -GGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGP-- 214
G P P G++ G+PG LP ++GH G+ PP G G
Sbjct: 546 RGMPGDPGVKGDRGFDGLPG----LPG------EKGHRGDTGAQGLPGPPGEDGERGDDG 595
Query: 215 --GPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGG 272
GP+ G P LGP P GP R P P S P GPPG
Sbjct: 596 EIGPRGL-PGESGPRGLLGPKGPPGIPGPPGVRGMDGPQG----PKGSLGPQGEPGPPGQ 650
Query: 273 GGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMG-PGSDGPMGGMGGMEPHHM 331
G PGT +P P + P PG S+ P G PG +GP G G P
Sbjct: 651 QGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGP 710
Query: 332 NGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQND 378
G LG P + G+ G GE G + F+ D
Sbjct: 711 QGPLG--------YPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGD 749
Score = 65.5 bits (158), Expect = 8e-11
Identities = 80/280 (28%), Positives = 103/280 (36%), Gaps = 51/280 (18%)
Query: 106 PPND-GMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSM--------MGPHSQP-FMSPR 155
PP + G+PG P P F GP G P P +P GP P + P+
Sbjct: 872 PPGERGLPG-PQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQ 930
Query: 156 YAGGPRPPI-RMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGP 214
A G P+ G+ P G PG Q L P + +G P PP G GP
Sbjct: 931 GAAGETGPMGERGHPGPPGPPGEQGL-PGTAGKEGTKGDPG---------PPGAPGKDGP 980
Query: 215 GPQNYGSGMRPPPNSLGPAMPGINMGPGA-GRPWPNPNSANSIPYSSSSPGTYVGPPGGG 273
+G+R P G +PG GPG G P+ P + SPG G G G
Sbjct: 981 ------AGLRGFPGERG--LPGTAGGPGLKGNEGPS-----GPPGPAGSPGER-GAAGSG 1026
Query: 274 GPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGP----GSDGPMGGMGGMEPH 329
GP G P P P ++ G P+GP G GP+G G P
Sbjct: 1027 GPIGPPGRPGPQGPPGAAGE---------KGVPGEKGPIGPTGRDGVQGPVGLPGPAGPP 1077
Query: 330 HMNGSLG-SGDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
+ G G G++ + G PPG P G +G
Sbjct: 1078 GVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVG 1117
Score = 64.3 bits (155), Expect = 2e-10
Identities = 85/322 (26%), Positives = 106/322 (32%), Gaps = 71/322 (22%)
Query: 106 PPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHN---PSS--MMGPHSQPFMSP-RY--A 157
PP P G I P QG PG P + PP P S GP M P R+
Sbjct: 400 PPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSG 459
Query: 158 GGPRPPIRMGNQPPGGVPGTQPLL-----PNSMDPTRQQGHPNMGGSMQRMNPPRGMGPM 212
GG + P+ + Q L P M T + G GS +GP
Sbjct: 460 GGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQ 519
Query: 213 GP-GPQNYGSGMRPPPNSLG-------------PAMPGI-----------------NMGP 241
GP GPQ G+ PP G P PG+ + G
Sbjct: 520 GPRGPQ----GLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGD 575
Query: 242 GAGRPWPNPNSAN------------SIPYSSSSPGTY--VGPPGGGGPPGTPIMPSPADS 287
+ P P + +P S G GPPG GPPG M P
Sbjct: 576 TGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGP 635
Query: 288 TNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP-KN 346
S + P PPG + PG+ G G G + PH G G + G+P +
Sbjct: 636 KGS---LGPQGEPGPPGQQGT-----PGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSD 687
Query: 347 SPNNISGISNPPGTPRDDGELG 368
P G PPGT + G G
Sbjct: 688 GPPGHPGKEGPPGTKGNQGPSG 709
Score = 53.1 bits (126), Expect = 4e-07
Identities = 71/249 (28%), Positives = 86/249 (34%), Gaps = 41/249 (16%)
Query: 97 APSPVLGNIPPND-------GMPGGPIPPGF--FQGPPGSQPSPHAQPP--PHNPSSMMG 145
+P P N PP G PG G +G PG+ +P P P P+ G
Sbjct: 1304 SPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPG 1363
Query: 146 PHSQPFMSPRYAGGPRPPIRMGNQPPGGV-PGTQPLLPNSMDPTRQQGHPNMGGSMQRMN 204
P + RP PPG V P P L ++GHP + G +
Sbjct: 1364 PDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLI---G 1420
Query: 205 PPRGMGPMG----PGPQNYGS--GMRPPPNSLGPAMPGINMGPGAGRPWP-NPNSANSIP 257
PP G G PGPQ G P + GP PG GP G P P P A
Sbjct: 1421 PPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPG---GP-PGLPGPAGPKGAKGAT 1476
Query: 258 YSSSSPGT--YVGPPGGGGPPGTPIMPSPADSTNSS------DNIYTMINPVPPGGSRSN 309
G GPPG GPPG I P P + + +P GG+
Sbjct: 1477 GPGGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGA--- 1533
Query: 310 FPMGPGSDG 318
PGS G
Sbjct: 1534 ----PGSPG 1538
Score = 38.9 bits (89), Expect = 0.008
Identities = 76/323 (23%), Positives = 91/323 (28%), Gaps = 76/323 (23%)
Query: 122 QGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLL 181
Q P +Q SP QP + P SQP S Y +PP T
Sbjct: 239 QQPHRAQRSPQQQPSRLHRPQNQEPQSQPTESLYY----------DYEPPYYDVMTTGTT 288
Query: 182 PNSMDPTRQQGHPNMGGSM---------QRMNPPR---------GMG----PMGPGPQNY 219
P+ DPT + + S+ PP G G P GP Y
Sbjct: 289 PDYQDPTPGEEEEILESSLLPPLEEEQTDLQVPPTADRFQAEEYGEGGTDPPEGPYDYTY 348
Query: 220 GSG-MRPPPNSLGPAMPGINMGPGAGRPWP-------------NPNSANSIPYSSSSPGT 265
G G LGPA+ GA P P P P
Sbjct: 349 GYGDDYREETELGPALSAETAHSGAAAHGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAG 408
Query: 266 YVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGS--------RSNFPMGP--- 314
+GPPG G PG P + + P PPG S GP
Sbjct: 409 LIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVA 468
Query: 315 ------------------GSDGPMGGMGGMEPHHMNGSLG-SGDIDGLPKNSPNNISGIS 355
G GPMG G P GS G G+ L P G++
Sbjct: 469 AQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLT 528
Query: 356 NPPGTPRDDGELGGNFLHSFQND 378
PPG G G + D
Sbjct: 529 GPPGKAGRRGRAGADGARGMPGD 551
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 82.8 bits (203), Expect = 5e-16
Identities = 87/272 (31%), Positives = 102/272 (37%), Gaps = 29/272 (10%)
Query: 102 LGNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPR 161
L +P G PG P PG G GS P P P G QP + P + G P
Sbjct: 1075 LPGLPGPKGEPGLPGYPGN-PGIKGSVGDPGLPGLPGTP----GAKGQPGL-PGFPGTPG 1128
Query: 162 PPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGS 221
PP G P G PG LP P GHP G P G GP Q
Sbjct: 1129 PPGPKGISGPPGNPG----LPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEP 1184
Query: 222 GMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIM 281
G N P +PG++ G G P +P PG + G PG GPPG P
Sbjct: 1185 GQPGFGNPGPPGLPGLSGQKGDG-GLPGIPGNPGLPGPKGEPG-FHGFPGVQGPPGPPGS 1242
Query: 282 PSPADSTNSSDNIYTMINPVPPG-GSRSNFPMGPGSDGPMG--GMGGMEPHHMNGSLGSG 338
P PA NP P G R F PG +GP G G GG++ G+ G
Sbjct: 1243 PGPALEGPKG-------NPGPQGPPGRPGFQGLPGPEGPPGLPGNGGIKGE--KGNPGQP 1293
Query: 339 DIDGLPKNSPNNISGISNPPGTPRDDGELGGN 370
+ GLP + G PPG + G G N
Sbjct: 1294 GLPGLP-----GLKGDQGPPGLQGNPGRPGLN 1320
Score = 79.0 bits (193), Expect = 7e-15
Identities = 88/288 (30%), Positives = 107/288 (37%), Gaps = 39/288 (13%)
Query: 106 PPNDGMPG-----GPI-PPGFFQGPPGSQPSPHAQPPPHNPSS--MMGPHSQPFMSPRYA 157
P N G+PG GP+ PPGF GPPG Q NP + GP P +
Sbjct: 605 PGNPGLPGLPGNIGPMGPPGF--GPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQP 662
Query: 158 GGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMG-PMGPGP 216
G P P G G+PG P LP Q G P + GS P G+G P PGP
Sbjct: 663 GKPGLPGNPGRDGDVGLPG-DPGLPG------QPGLPGIPGSKGEPGIP-GIGLPGPPGP 714
Query: 217 QNYGSGMRPPPNSLG-PAMPGINMGPGA-GRPWPNPNSANSIPYSSSSPGT--------- 265
+ + G+ PP + G P G+ PG G P P ++P PG
Sbjct: 715 KGF-PGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGP 773
Query: 266 -----YVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPM 320
+ GPPG G G +P P + M P PG P PG GP+
Sbjct: 774 KGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPI 833
Query: 321 GGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
G G H + G G GL P G PG P G G
Sbjct: 834 GQPG---LHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPG 878
Score = 78.6 bits (192), Expect = 9e-15
Identities = 99/315 (31%), Positives = 119/315 (37%), Gaps = 56/315 (17%)
Query: 93 SAAAAPSPVLGNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFM 152
S A P L P DG+PG P P +G PG + PP NP P + M
Sbjct: 565 SPGAPGLPGLPGTPGQDGLPGLPGP----KGEPGGITFKGERGPPGNPGLPGLPGNIGPM 620
Query: 153 SPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSM-DPTR---QQGHPNMGGSMQRMNPPRG 208
P G P P G Q G PG QP +P DP + Q G P + G NP R
Sbjct: 621 GPPGFGPPGPVGEKGIQGVAGNPG-QPGIPGPKGDPGQTITQPGKPGLPG-----NPGRD 674
Query: 209 MGPMG-PGPQNYGS--GMRPPPNSLG-PAMPGINMGPGAGRPWPNPNSANSIPYSSSSPG 264
G +G PG G+ P S G P +PGI + PG P P IP +PG
Sbjct: 675 -GDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGL-PGP----PGPKGFPGIPGPPGAPG 728
Query: 265 TYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPG-----------GSRSNFPMG 313
T G G GPPG P P P P PPG G R FP
Sbjct: 729 T-PGRIGLEGPPGPPGFPGP----KGEPGFALPGPPGPPGLPGFKGALGPKGDRG-FPGP 782
Query: 314 PGS------DGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGEL 367
PG DG G G + P+ G +G + G+ + G PPG P G +
Sbjct: 783 PGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGI------GVQGPPGPPGIP---GPI 833
Query: 368 GGNFLHSFQNDNYSP 382
G LH + P
Sbjct: 834 GQPGLHGIPGEKGDP 848
Score = 75.9 bits (185), Expect = 6e-14
Identities = 90/319 (28%), Positives = 104/319 (32%), Gaps = 69/319 (21%)
Query: 103 GNIPPNDGMPGGPIPPGF----FQGPPGSQ--PSPHAQPPPHNPSSMMGPHSQPFMSPRY 156
G++ PN G PG PPG QGPPG P P QP H G P +
Sbjct: 799 GDVGPN-GQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDV-- 855
Query: 157 AGGPRPPIRMGNQPPGGVPGT--QPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG- 213
P PP G+ G PG P P G P G M M PP GP+G
Sbjct: 856 ---PGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGI 912
Query: 214 ---------------------PGPQNYGSGMRPP----------PNSLG-------PAMP 235
PGP P PN LG P +P
Sbjct: 913 PGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLP 972
Query: 236 GINMGPGAGRPWPNPNSANSIPYSSSSPGT-----YVGPPGGGGPPGTPIMPSPADSTNS 290
GI PG P +P PG GPPG G PG P P
Sbjct: 973 GI---PGVS----GPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGL 1025
Query: 291 SDNIYTMINPVPPGGSRSNFPMG-PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPN 349
I M P P G P G PG G G+ G + + + S + GLP P
Sbjct: 1026 KGTIGDMGFPGPQGVEGPPGPSGVPGQPG-SPGLPGQKGDKGDPGISSIGLPGLP--GPK 1082
Query: 350 NISGISNPPGTPRDDGELG 368
G+ PG P G +G
Sbjct: 1083 GEPGLPGYPGNPGIKGSVG 1101
Score = 74.7 bits (182), Expect = 1e-13
Identities = 85/295 (28%), Positives = 103/295 (34%), Gaps = 41/295 (13%)
Query: 99 SPVLGNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQP-------F 151
S ++ ++P G PG P PPG QG PG P PP P +MGP P
Sbjct: 160 SIIMSSLPGPKGNPGYPGPPG-IQGLPGPTGIPGPIGPP-GPPGLMGPPGPPGLPGPKGN 217
Query: 152 MSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGP 211
M + G G Q P G PG +D Q+G + G PP GP
Sbjct: 218 MGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGP 277
Query: 212 MG-PGPQNYGSGMRPPPNSLG-PAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGP 269
G PG + G + P G P G N PG IP PG Y G
Sbjct: 278 PGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPG-------------IPGLPGDPG-YPGE 323
Query: 270 P---------GGGGPPGTP--IMPSPADSTNSSDNIYTMINPVPPGGSRSNFP---MGPG 315
P G GPPG P ++P P + + +P FP PG
Sbjct: 324 PGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPG 383
Query: 316 SDGPMGG--MGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
GP G MG P G G +G P S G+ PG P G G
Sbjct: 384 LPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPG 438
Score = 74.7 bits (182), Expect = 1e-13
Identities = 89/298 (29%), Positives = 105/298 (35%), Gaps = 38/298 (12%)
Query: 100 PVLGNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGG 159
P L +P G G P PG F G PG PP NP P P + G
Sbjct: 1103 PGLPGLPGTPGAKGQPGLPG-FPGTPGPPGPKGISGPPGNPGLPGEP--GPVGGGGHPGQ 1159
Query: 160 PRPPIRMGNQPPGGVPGT-----QPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG- 213
P PP G G+PG +P P +P G P + G P G G
Sbjct: 1160 PGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNP-GPPGLPGLSGQKGDGGLPGIPGNPGL 1218
Query: 214 PGPQN----YG----SGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGT 265
PGP+ +G G PP S GPA+ G PG P P +P PG
Sbjct: 1219 PGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGP-PGRPGFQGLPGPEGPPGL 1277
Query: 266 YVGPPGGG------GPPGTPIMPSPADSTNSSDNIYTMINPVPPG--GSRSN-----FPM 312
PG G G PG P +P NP PG G + + P
Sbjct: 1278 ----PGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPG 1333
Query: 313 GPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNN--ISGISNPPGTPRDDGELG 368
PG GP G G P G +G GLP S + I G + PPG P G G
Sbjct: 1334 FPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKG 1391
Score = 73.6 bits (179), Expect = 3e-13
Identities = 85/297 (28%), Positives = 103/297 (34%), Gaps = 30/297 (10%)
Query: 94 AAAAPSPVLGNIPPNDGMPGGPIPPGF-FQGPPG--SQPSPHAQPPPHNPSSMMGPHSQP 150
AA P P G G PPG GPPG QP P P P+ GPH P
Sbjct: 390 AAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPA---GPHIPP 446
Query: 151 FMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMD------------PTRQQGHPNMGG 198
G P PP G+ G+ G Q + + D P Q G P + G
Sbjct: 447 SDEICEPGPPGPP---GSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPG 503
Query: 199 SMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLG-PAMPGINMGPGAGRPWPNPNSANSIP 257
+ P G G G+ P + G P PG PG +P
Sbjct: 504 PPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGEL 563
Query: 258 YSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNS---SDNIYTMINPVPPGGSRSNFPMGP 314
S +PG G PG G G P +P P NP PG + PMGP
Sbjct: 564 GSPGAPG-LPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGP 622
Query: 315 GSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNI---SGISNPPGTPRDDGELG 368
GP G +G + G+ G I G PK P G PG P DG++G
Sbjct: 623 PGFGPPGPVGEKGIQGVAGNPGQPGIPG-PKGDPGQTITQPGKPGLPGNPGRDGDVG 678
Score = 72.4 bits (176), Expect = 7e-13
Identities = 80/268 (29%), Positives = 102/268 (38%), Gaps = 47/268 (17%)
Query: 110 GMPGGPIPPGFFQGPPG--SQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMG 167
G+PG P P +GPPG Q P P P + GP P P G P P G
Sbjct: 60 GLPGFPGP----EGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGF-PGTPGLPGMPGHDG 114
Query: 168 NQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPP 227
P G+PG ++G P G PP GP G GM+ P
Sbjct: 115 APGPQGIPGCN-------GTKGERGFPGSPGFPGLQGPP---GPPGI------PGMKGEP 158
Query: 228 NSL-GPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTY--VGPPGGGGPPGTPIMPSP 284
S+ ++PG PG +P P +P + PG GPPG GPPG P +P P
Sbjct: 159 GSIIMSSLPGPKGNPG----YPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGP 214
Query: 285 ADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGM--EPHHMNGSLGSGDIDG 342
+ +N P G + G GP G G + + ++ GD G
Sbjct: 215 KGNMG--------LNFQGPKGEKGE----QGLQGPPGPPGQISEQKRPIDVEFQKGD-QG 261
Query: 343 LP-KNSPNNISGISNPPGTP-RDDGELG 368
LP P GI PPG P + GE G
Sbjct: 262 LPGDRGPPGPPGIRGPPGPPGGEKGEKG 289
Score = 67.4 bits (163), Expect = 2e-11
Identities = 81/270 (30%), Positives = 106/270 (39%), Gaps = 45/270 (16%)
Query: 100 PVLGNIPPNDGMPGGPIPPG-FFQGPPGSQPSPHAQPPPHNP--SSMMGPHSQPFMSPRY 156
P P G PG P PG +GP G +P Q PP P + GP P +
Sbjct: 1225 PGFHGFPGVQGPPGPPGSPGPALEGPKG---NPGPQGPPGRPGFQGLPGPEGPPGLPGN- 1280
Query: 157 AGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGP 216
GG + GN G+PG P L P QG+P G +N +G P PG
Sbjct: 1281 -GGIKG--EKGNPGQPGLPGL-PGLKGDQGPPGLQGNPGRPG----LNGMKG-DPGLPGV 1331
Query: 217 QNYGSGMRPP---PNSLGP-AMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGG 272
+ GM+ P P S GP PG+ +GP P P+ + I + GPPG
Sbjct: 1332 PGF-PGMKGPSGVPGSAGPEGEPGL-IGPPGPPGLPGPSGQSIIIKGDA------GPPGI 1383
Query: 273 GGPPGTPIMPSPADSTNSSDNIYTMINPVPPGG--SRSNFPMGPGSDGPMGGMGGMEPHH 330
G PG +P P + P P G R+ P G+ G G G
Sbjct: 1384 PGQPGLKGLPGPQGPQG-------LPGPTGPPGDPGRNGLPGFDGAGGRKGDPG------ 1430
Query: 331 MNGSLGSGDIDGLPKNSPNNISGISNPPGT 360
+ G G+ +DG P P+ + G PPGT
Sbjct: 1431 LPGQPGTRGLDGPP--GPDGLQGPPGPPGT 1458
Score = 58.9 bits (141), Expect = 7e-09
Identities = 59/189 (31%), Positives = 70/189 (37%), Gaps = 30/189 (15%)
Query: 191 QGHPNMGGSMQRMNPPRGMGPMG----PGPQNYGSGMRPPPNSLG----PAMPGINMGPG 242
+GHP + G PP G G PGP G+R PP G P +PG+ G
Sbjct: 56 EGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPG-PKGIRGPPGLPGFPGTPGLPGMPGHDG 114
Query: 243 AGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVP 302
A P P N PG+ G PG GPPG P +P S I P P
Sbjct: 115 APGPQGIPG-CNGTKGERGFPGS-PGFPGLQGPPGPPGIPGMKGEPGS---IIMSSLPGP 169
Query: 303 PGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPR 362
G PG GP G G P + G +G P + G PPG P
Sbjct: 170 KGN--------PGYPGPPGIQGLPGPTGIPGPIGPP--------GPPGLMGPPGPPGLPG 213
Query: 363 DDGELGGNF 371
G +G NF
Sbjct: 214 PKGNMGLNF 222
Score = 52.4 bits (124), Expect = 7e-07
Identities = 75/280 (26%), Positives = 90/280 (32%), Gaps = 80/280 (28%)
Query: 102 LGNIPPNDGMPGGPIPPGFF-----QGPPG--SQPSPHAQPPPHNPSSMMGPHSQPFMSP 154
L IP N G+PG PGF QGPPG P P + P NP GP P P
Sbjct: 1209 LPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNP----GPQGPPGR-P 1263
Query: 155 RYAGGPRPPIRMGNQPPGGVPGT-----QPLLPNSMDPTRQQGHPNMGGSMQR------- 202
+ G P P G GG+ G QP LP QG P + G+ R
Sbjct: 1264 GFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMK 1323
Query: 203 -------------MNPPRGM-GPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPW- 247
M P G+ G GP + G PP GP+ I + AG P
Sbjct: 1324 GDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGI 1383
Query: 248 ---------PNPNSANSIPYSSSSPGT-----------------------------YVGP 269
P P +P + PG GP
Sbjct: 1384 PGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGP 1443
Query: 270 PGGGG---PPGTPIMPSPADSTNSSDNIYTMINPVPPGGS 306
PG G PPG P S A + + T P P G+
Sbjct: 1444 PGPDGLQGPPGPPGTSSVAHGFLITRHSQTTDAPQCPQGT 1483
Score = 40.0 bits (92), Expect = 0.004
Identities = 39/124 (31%), Positives = 44/124 (35%), Gaps = 10/124 (8%)
Query: 268 GPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPG--GSRS-----NFPMGPGSDGPM 320
G PG G PG P P P P PPG G R FP PG G
Sbjct: 51 GFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMP 110
Query: 321 GGMGGMEPHHMNGSLGSGDIDGLPKNSPN--NISGISNPPGTPRDDGELGGNFLHSFQND 378
G G P + G G+ G P SP + G PPG P GE G + S
Sbjct: 111 GHDGAPGPQGIPGCNGTKGERGFP-GSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGP 169
Query: 379 NYSP 382
+P
Sbjct: 170 KGNP 173
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 82.0 bits (201), Expect = 8e-16
Identities = 87/275 (31%), Positives = 102/275 (37%), Gaps = 32/275 (11%)
Query: 102 LGNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPR 161
L +P G PG P PG G GS P P P G QP + P + G P
Sbjct: 1075 LPGLPGPKGEPGLPGYPGN-PGIKGSVGDPGLPGLPGTP----GAKGQPGL-PGFPGTPG 1128
Query: 162 PPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGS 221
PP G P G PG LP P GHP G P G GP Q
Sbjct: 1129 PPGPKGISGPPGNPG----LPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEP 1184
Query: 222 GMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIM 281
G N P +PG++ G G P +P PG + G PG GPPG P
Sbjct: 1185 GQPGFGNPGPPGLPGLSGQKGDG-GLPGIPGNPGLPGPKGEPG-FHGFPGVQGPPGPPGS 1242
Query: 282 PSPADSTNSSDNIYTMINPVPPGGSRSNFPMG----PGSDGPMG--GMGGMEPHHMNGSL 335
P PA NP P G P G PG +GP G G GG++ G+
Sbjct: 1243 PGPALEGPKG-------NPGPQGPPGRPGPTGFQGLPGPEGPPGLPGNGGIKGE--KGNP 1293
Query: 336 GSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGN 370
G + GLP + G PPG + G G N
Sbjct: 1294 GQPGLPGLP-----GLKGDQGPPGLQGNPGRPGLN 1323
Score = 79.0 bits (193), Expect = 7e-15
Identities = 88/288 (30%), Positives = 107/288 (37%), Gaps = 39/288 (13%)
Query: 106 PPNDGMPG-----GPI-PPGFFQGPPGSQPSPHAQPPPHNPSS--MMGPHSQPFMSPRYA 157
P N G+PG GP+ PPGF GPPG Q NP + GP P +
Sbjct: 605 PGNPGLPGLPGNIGPMGPPGF--GPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQP 662
Query: 158 GGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMG-PMGPGP 216
G P P G G+PG P LP Q G P + GS P G+G P PGP
Sbjct: 663 GKPGLPGNPGRDGDVGLPG-DPGLPG------QPGLPGIPGSKGEPGIP-GIGLPGPPGP 714
Query: 217 QNYGSGMRPPPNSLG-PAMPGINMGPGA-GRPWPNPNSANSIPYSSSSPGT--------- 265
+ + G+ PP + G P G+ PG G P P ++P PG
Sbjct: 715 KGF-PGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGP 773
Query: 266 -----YVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPM 320
+ GPPG G G +P P + M P PG P PG GP+
Sbjct: 774 KGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPI 833
Query: 321 GGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
G G H + G G GL P G PG P G G
Sbjct: 834 GQPG---LHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPG 878
Score = 78.6 bits (192), Expect = 9e-15
Identities = 99/315 (31%), Positives = 119/315 (37%), Gaps = 56/315 (17%)
Query: 93 SAAAAPSPVLGNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFM 152
S A P L P DG+PG P P +G PG + PP NP P + M
Sbjct: 565 SPGAPGLPGLPGTPGQDGLPGLPGP----KGEPGGITFKGERGPPGNPGLPGLPGNIGPM 620
Query: 153 SPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSM-DPTR---QQGHPNMGGSMQRMNPPRG 208
P G P P G Q G PG QP +P DP + Q G P + G NP R
Sbjct: 621 GPPGFGPPGPVGEKGIQGVAGNPG-QPGIPGPKGDPGQTITQPGKPGLPG-----NPGRD 674
Query: 209 MGPMG-PGPQNYGS--GMRPPPNSLG-PAMPGINMGPGAGRPWPNPNSANSIPYSSSSPG 264
G +G PG G+ P S G P +PGI + PG P P IP +PG
Sbjct: 675 -GDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGL-PGP----PGPKGFPGIPGPPGAPG 728
Query: 265 TYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPG-----------GSRSNFPMG 313
T G G GPPG P P P P PPG G R FP
Sbjct: 729 T-PGRIGLEGPPGPPGFPGP----KGEPGFALPGPPGPPGLPGFKGALGPKGDRG-FPGP 782
Query: 314 PGS------DGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGEL 367
PG DG G G + P+ G +G + G+ + G PPG P G +
Sbjct: 783 PGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGI------GVQGPPGPPGIP---GPI 833
Query: 368 GGNFLHSFQNDNYSP 382
G LH + P
Sbjct: 834 GQPGLHGIPGEKGDP 848
Score = 77.4 bits (189), Expect = 2e-14
Identities = 90/300 (30%), Positives = 106/300 (35%), Gaps = 39/300 (13%)
Query: 100 PVLGNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGG 159
P L +P G G P PG F G PG PP NP P P + G
Sbjct: 1103 PGLPGLPGTPGAKGQPGLPG-FPGTPGPPGPKGISGPPGNPGLPGEP--GPVGGGGHPGQ 1159
Query: 160 PRPPIRMGNQPPGGVPGT-----QPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG- 213
P PP G G+PG +P P +P G P + G P G G
Sbjct: 1160 PGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNP-GPPGLPGLSGQKGDGGLPGIPGNPGL 1218
Query: 214 PGPQN----YG----SGMRPPPNSLGPAMPGINMGPGAGRP--WPNPNSANSIPYSSSSP 263
PGP+ +G G PP S GPA+ G PG P P P +P P
Sbjct: 1219 PGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGPTGFQGLPGPEGPP 1278
Query: 264 GTYVGPPGGG------GPPGTPIMPSPADSTNSSDNIYTMINPVPPG--GSRSN-----F 310
G PG G G PG P +P NP PG G + +
Sbjct: 1279 GL----PGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGV 1334
Query: 311 PMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNN--ISGISNPPGTPRDDGELG 368
P PG GP G G P G +G GLP S + I G + PPG P G G
Sbjct: 1335 PGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKG 1394
Score = 75.9 bits (185), Expect = 6e-14
Identities = 90/319 (28%), Positives = 104/319 (32%), Gaps = 69/319 (21%)
Query: 103 GNIPPNDGMPGGPIPPGF----FQGPPGSQ--PSPHAQPPPHNPSSMMGPHSQPFMSPRY 156
G++ PN G PG PPG QGPPG P P QP H G P +
Sbjct: 799 GDVGPN-GQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDV-- 855
Query: 157 AGGPRPPIRMGNQPPGGVPGT--QPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG- 213
P PP G+ G PG P P G P G M M PP GP+G
Sbjct: 856 ---PGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGI 912
Query: 214 ---------------------PGPQNYGSGMRPP----------PNSLG-------PAMP 235
PGP P PN LG P +P
Sbjct: 913 PGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLP 972
Query: 236 GINMGPGAGRPWPNPNSANSIPYSSSSPGT-----YVGPPGGGGPPGTPIMPSPADSTNS 290
GI PG P +P PG GPPG G PG P P
Sbjct: 973 GI---PGVS----GPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGL 1025
Query: 291 SDNIYTMINPVPPGGSRSNFPMG-PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPN 349
I M P P G P G PG G G+ G + + + S + GLP P
Sbjct: 1026 KGTIGDMGFPGPQGVEGPPGPSGVPGQPG-SPGLPGQKGDKGDPGISSIGLPGLP--GPK 1082
Query: 350 NISGISNPPGTPRDDGELG 368
G+ PG P G +G
Sbjct: 1083 GEPGLPGYPGNPGIKGSVG 1101
Score = 74.7 bits (182), Expect = 1e-13
Identities = 85/295 (28%), Positives = 103/295 (34%), Gaps = 41/295 (13%)
Query: 99 SPVLGNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQP-------F 151
S ++ ++P G PG P PPG QG PG P PP P +MGP P
Sbjct: 160 SIIMSSLPGPKGNPGYPGPPG-IQGLPGPTGIPGPIGPP-GPPGLMGPPGPPGLPGPKGN 217
Query: 152 MSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGP 211
M + G G Q P G PG +D Q+G + G PP GP
Sbjct: 218 MGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGP 277
Query: 212 MG-PGPQNYGSGMRPPPNSLG-PAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGP 269
G PG + G + P G P G N PG IP PG Y G
Sbjct: 278 PGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPG-------------IPGLPGDPG-YPGE 323
Query: 270 P---------GGGGPPGTP--IMPSPADSTNSSDNIYTMINPVPPGGSRSNFP---MGPG 315
P G GPPG P ++P P + + +P FP PG
Sbjct: 324 PGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPG 383
Query: 316 SDGPMGG--MGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
GP G MG P G G +G P S G+ PG P G G
Sbjct: 384 LPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPG 438
Score = 73.6 bits (179), Expect = 3e-13
Identities = 85/297 (28%), Positives = 103/297 (34%), Gaps = 30/297 (10%)
Query: 94 AAAAPSPVLGNIPPNDGMPGGPIPPGF-FQGPPG--SQPSPHAQPPPHNPSSMMGPHSQP 150
AA P P G G PPG GPPG QP P P P+ GPH P
Sbjct: 390 AAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPA---GPHIPP 446
Query: 151 FMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMD------------PTRQQGHPNMGG 198
G P PP G+ G+ G Q + + D P Q G P + G
Sbjct: 447 SDEICEPGPPGPP---GSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPG 503
Query: 199 SMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLG-PAMPGINMGPGAGRPWPNPNSANSIP 257
+ P G G G+ P + G P PG PG +P
Sbjct: 504 PPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGEL 563
Query: 258 YSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNS---SDNIYTMINPVPPGGSRSNFPMGP 314
S +PG G PG G G P +P P NP PG + PMGP
Sbjct: 564 GSPGAPG-LPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGP 622
Query: 315 GSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNI---SGISNPPGTPRDDGELG 368
GP G +G + G+ G I G PK P G PG P DG++G
Sbjct: 623 PGFGPPGPVGEKGIQGVAGNPGQPGIPG-PKGDPGQTITQPGKPGLPGNPGRDGDVG 678
Score = 72.4 bits (176), Expect = 7e-13
Identities = 80/268 (29%), Positives = 102/268 (38%), Gaps = 47/268 (17%)
Query: 110 GMPGGPIPPGFFQGPPG--SQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMG 167
G+PG P P +GPPG Q P P P + GP P P G P P G
Sbjct: 60 GLPGFPGP----EGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGF-PGTPGLPGMPGHDG 114
Query: 168 NQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPP 227
P G+PG ++G P G PP GP G GM+ P
Sbjct: 115 APGPQGIPGCN-------GTKGERGFPGSPGFPGLQGPP---GPPGI------PGMKGEP 158
Query: 228 NSL-GPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTY--VGPPGGGGPPGTPIMPSP 284
S+ ++PG PG +P P +P + PG GPPG GPPG P +P P
Sbjct: 159 GSIIMSSLPGPKGNPG----YPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGP 214
Query: 285 ADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGM--EPHHMNGSLGSGDIDG 342
+ +N P G + G GP G G + + ++ GD G
Sbjct: 215 KGNMG--------LNFQGPKGEKGE----QGLQGPPGPPGQISEQKRPIDVEFQKGD-QG 261
Query: 343 LP-KNSPNNISGISNPPGTP-RDDGELG 368
LP P GI PPG P + GE G
Sbjct: 262 LPGDRGPPGPPGIRGPPGPPGGEKGEKG 289
Score = 68.2 bits (165), Expect = 1e-11
Identities = 81/270 (30%), Positives = 105/270 (38%), Gaps = 42/270 (15%)
Query: 100 PVLGNIPPNDGMPGGPIPPG-FFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAG 158
P P G PG P PG +GP G+ P P P P+ G P G
Sbjct: 1225 PGFHGFPGVQGPPGPPGSPGPALEGPKGN-PGPQGPPGRPGPTGFQG-------LPGPEG 1276
Query: 159 GPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQR--MNPPRGMGPMGPGP 216
P P G + G PG QP LP QG P + G+ R +N +G P PG
Sbjct: 1277 PPGLPGNGGIKGEKGNPG-QPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKG-DPGLPGV 1334
Query: 217 QNYGSGMRPP---PNSLGP-AMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGG 272
+ GM+ P P S GP PG+ +GP P P+ + I + GPPG
Sbjct: 1335 PGF-PGMKGPSGVPGSAGPEGEPGL-IGPPGPPGLPGPSGQSIIIKGDA------GPPGI 1386
Query: 273 GGPPGTPIMPSPADSTNSSDNIYTMINPVPPGG--SRSNFPMGPGSDGPMGGMGGMEPHH 330
G PG +P P + P P G R+ P G+ G G G
Sbjct: 1387 PGQPGLKGLPGPQGPQG-------LPGPTGPPGDPGRNGLPGFDGAGGRKGDPG------ 1433
Query: 331 MNGSLGSGDIDGLPKNSPNNISGISNPPGT 360
+ G G+ +DG P P+ + G PPGT
Sbjct: 1434 LPGQPGTRGLDGPP--GPDGLQGPPGPPGT 1461
Score = 58.9 bits (141), Expect = 7e-09
Identities = 59/189 (31%), Positives = 70/189 (37%), Gaps = 30/189 (15%)
Query: 191 QGHPNMGGSMQRMNPPRGMGPMG----PGPQNYGSGMRPPPNSLG----PAMPGINMGPG 242
+GHP + G PP G G PGP G+R PP G P +PG+ G
Sbjct: 56 EGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPG-PKGIRGPPGLPGFPGTPGLPGMPGHDG 114
Query: 243 AGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVP 302
A P P N PG+ G PG GPPG P +P S I P P
Sbjct: 115 APGPQGIPG-CNGTKGERGFPGS-PGFPGLQGPPGPPGIPGMKGEPGS---IIMSSLPGP 169
Query: 303 PGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPR 362
G PG GP G G P + G +G P + G PPG P
Sbjct: 170 KGN--------PGYPGPPGIQGLPGPTGIPGPIGPP--------GPPGLMGPPGPPGLPG 213
Query: 363 DDGELGGNF 371
G +G NF
Sbjct: 214 PKGNMGLNF 222
Score = 50.8 bits (120), Expect = 2e-06
Identities = 74/280 (26%), Positives = 90/280 (32%), Gaps = 77/280 (27%)
Query: 102 LGNIPPNDGMPGGPIPPGFF-----QGPPG--SQPSPHAQPPPHNPS------------- 141
L IP N G+PG PGF QGPPG P P + P NP
Sbjct: 1209 LPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGPTGF 1268
Query: 142 -SMMGPHSQPFM-----------SPRYAGGPRPPIRMGNQPPGGVPGT-----------Q 178
+ GP P + +P G P P G+Q P G+ G
Sbjct: 1269 QGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGD 1328
Query: 179 PLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGP----GPQNYG---SGMRPPPNSLG 231
P LP +G + GS P +GP GP GP G PP
Sbjct: 1329 PGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGI-- 1386
Query: 232 PAMPGINMGPGAGRPW--------PNPNSANSIPYSSSS------------PGTY----- 266
P PG+ PG P P N +P + PGT
Sbjct: 1387 PGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGP 1446
Query: 267 VGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGS 306
GP G GPPG P S A + + T P P G+
Sbjct: 1447 PGPDGLQGPPGPPGTSSVAHGFLITRHSQTTDAPQCPQGT 1486
Score = 40.0 bits (92), Expect = 0.004
Identities = 39/124 (31%), Positives = 44/124 (35%), Gaps = 10/124 (8%)
Query: 268 GPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPG--GSRS-----NFPMGPGSDGPM 320
G PG G PG P P P P PPG G R FP PG G
Sbjct: 51 GFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMP 110
Query: 321 GGMGGMEPHHMNGSLGSGDIDGLPKNSPN--NISGISNPPGTPRDDGELGGNFLHSFQND 378
G G P + G G+ G P SP + G PPG P GE G + S
Sbjct: 111 GHDGAPGPQGIPGCNGTKGERGFP-GSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGP 169
Query: 379 NYSP 382
+P
Sbjct: 170 KGNP 173
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 82.0 bits (201), Expect = 8e-16
Identities = 87/289 (30%), Positives = 105/289 (36%), Gaps = 54/289 (18%)
Query: 110 GMPG--GPIPPGFFQGPPGSQP-----SPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRP 162
G PG GPI P QGPPG + P A P P + G P +P AG P P
Sbjct: 238 GFPGEMGPIGPPGPQGPPGERGPEGIGKPGAAGAPGQPG-IPGTKGLPG-APGIAGPPGP 295
Query: 163 PI--------RMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGP 214
P G + P G+PG P P G P + G PP MGP GP
Sbjct: 296 PGFGKPGLPGLKGERGPAGLPGG-PGAKGEQGPAGLPGKPGLTG------PPGNMGPQGP 348
Query: 215 GPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGG 274
G+ P GPA P AG +P P S PG Y G PG G
Sbjct: 349 KGIPGSHGLPGPKGETGPAGP-------AG--YPGAKGERGSPGSDGKPG-YPGKPGLDG 398
Query: 275 PPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGS 334
P G P +P P + PV P G++ PG +G G G G
Sbjct: 399 PKGNPGLPGPKGDPGVG-GPPGLPGPVGPAGAKGM----PGHNGEAGPRGAPGIPGTRGP 453
Query: 335 LGSGDIDGLP--KNSPNN-------------ISGISNPPGTPRDDGELG 368
+G I G P K P + ++G + PPG P G G
Sbjct: 454 IGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSG 502
Score = 73.6 bits (179), Expect = 3e-13
Identities = 90/290 (31%), Positives = 101/290 (34%), Gaps = 49/290 (16%)
Query: 91 DYSAAAAPSPVLGNIPPNDGMPGGPIPPGF-FQGPPGSQPSPHAQPPPHNPSSMMGPHSQ 149
D A P P PP G PG P P G G PG Q P P P G
Sbjct: 128 DVGPAGLPGP---RGPP--GPPGIPGPAGISVPGKPGQQ-GPTGAPGPRGFPGEKGAPGV 181
Query: 150 PFMSPRYA----GGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNP 205
P M+ + G P P G P G G P P + + G P G
Sbjct: 182 PGMNGQKGEMGYGAPGRPGERGLPGPQGPTG--PSGPPGVGKRGENGVPGQPGIKGDRGF 239
Query: 206 PRGMGPMG-PGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPG 264
P MGP+G PGPQ PP GP G G+P A P PG
Sbjct: 240 PGEMGPIGPPGPQG-------PPGERGP--------EGIGKP-----GAAGAPGQPGIPG 279
Query: 265 T--YVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMG----PGSDG 318
T G PG GPPG P P + + P PG P G PG G
Sbjct: 280 TKGLPGAPGIAGPPGPPGFGKPGLPGLKGERGPAGL-PGGPGAKGEQGPAGLPGKPGLTG 338
Query: 319 PMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
P G MG P + GS GLP P +G + P G P GE G
Sbjct: 339 PPGNMGPQGPKGIPGS------HGLP--GPKGETGPAGPAGYPGAKGERG 380
Score = 69.7 bits (169), Expect = 4e-12
Identities = 73/222 (32%), Positives = 81/222 (36%), Gaps = 25/222 (11%)
Query: 110 GMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQ 169
G+PGGP G QGP G P PP N MGP P P G P P G
Sbjct: 314 GLPGGPGAKGE-QGPAGLPGKPGLTGPPGN----MGPQG-PKGIPGSHGLPGPKGETGPA 367
Query: 170 PPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG----PGPQNYGSGMRP 225
P G PG + ++G P G P GP G PGP+ G+
Sbjct: 368 GPAGYPGAKG----------ERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKG-DPGVGG 416
Query: 226 PPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSS--SPGTYVGPPGGGGPPGTPIMPS 283
PP GP P G P A IP + P G PG G PG+P P
Sbjct: 417 PPGLPGPVGPAGAKGMPGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPG 476
Query: 284 PADSTNSSDNIYTMINPVPPG-GSRSNFPMGPGSDGPMGGMG 324
PA N T P PPG S P PG GP G G
Sbjct: 477 PAGIATKGLNGPTG-PPGPPGPRGHSGEPGLPGPPGPPGPPG 517
Score = 63.9 bits (154), Expect = 2e-10
Identities = 67/200 (33%), Positives = 75/200 (37%), Gaps = 36/200 (18%)
Query: 110 GMPGGPIPPGFF--QGPPGSQPSPHAQPPPHNPSSMMGPHSQPFM-----SPRYAGGPRP 162
G PG PPG QGP G P H P P + GP P SP G P
Sbjct: 332 GKPGLTGPPGNMGPQGPKGI-PGSHGLPGPKGETGPAGPAGYPGAKGERGSPGSDGKPGY 390
Query: 163 PIRMGNQPPGGVPGTQ-----------PLLPNSMDPTRQQGHPNMGGSM-QRMNP--PRG 208
P + G P G PG P LP + P +G P G R P P
Sbjct: 391 PGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAPGIPGT 450
Query: 209 MGPMGPG-----PQNYGSGMRP-PPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSS 262
GP+GP P + G P PP G A G+N G P P P S
Sbjct: 451 RGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGP-PGPRG------HSGE 503
Query: 263 PGTYVGPPGGGGPPGTPIMP 282
PG GPPG GPPG +MP
Sbjct: 504 PGL-PGPPGPPGPPGQAVMP 522
Score = 58.9 bits (141), Expect = 7e-09
Identities = 76/252 (30%), Positives = 89/252 (35%), Gaps = 31/252 (12%)
Query: 123 GPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLP 182
GPPG P P P P G S GP P +G G+PG P
Sbjct: 63 GPPGPA-GPRGHPGPSGPPGKPGYGSPGLQGEPGLPGPPGPSAVGKPGVPGLPGK----P 117
Query: 183 NSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG-PGPQNYGSGMRPPPNSLGPAMPGINMGP 241
P +G G PP GP G PGP G + P GP G
Sbjct: 118 GERGPYGPKGDVGPAGLPGPRGPP---GPPGIPGPA--GISVPGKPGQQGPT------GA 166
Query: 242 GAGRPWPNPNSANSIPYSSSSPGTY-VGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINP 300
R +P A +P + G G PG G G P P + N
Sbjct: 167 PGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQGPTGPSGPPGVGKRGENG 226
Query: 301 VP--PG--GSRSNFP--MGP-GSDGPMGGMGGMEPHHMN--GSLGSGDIDGLP--KNSPN 349
VP PG G R FP MGP G GP G G P + G+ G+ G+P K P
Sbjct: 227 VPGQPGIKGDR-GFPGEMGPIGPPGPQGPPGERGPEGIGKPGAAGAPGQPGIPGTKGLP- 284
Query: 350 NISGISNPPGTP 361
GI+ PPG P
Sbjct: 285 GAPGIAGPPGPP 296
Score = 57.8 bits (138), Expect = 2e-08
Identities = 58/178 (32%), Positives = 67/178 (37%), Gaps = 32/178 (17%)
Query: 198 GSMQRMNPPRGMGPMG-PGPQNYGSGMRPPPNSLGPAMPGINMGPGA-GRPWPNPNSANS 255
G PP GP G PGP PP G PG+ PG G P P+
Sbjct: 57 GEQGTPGPPGPAGPRGHPGPSG-------PPGKPGYGSPGLQGEPGLPGPPGPSAVGKPG 109
Query: 256 IPYSSSSPGTY--------VGP---PGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPG 304
+P PG VGP PG GPPG P +P PA I P G
Sbjct: 110 VPGLPGKPGERGPYGPKGDVGPAGLPGPRGPPGPPGIPGPA-------GISVPGKPGQQG 162
Query: 305 GSRSNFPMG-PGSDGPMG--GMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPG 359
+ + P G PG G G GM G + G+ G GLP P +G S PPG
Sbjct: 163 PTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLP--GPQGPTGPSGPPG 218
Score = 48.1 bits (113), Expect = 1e-05
Identities = 48/161 (29%), Positives = 57/161 (35%), Gaps = 21/161 (13%)
Query: 239 MGPGAGRPWPNPNSANSIPYSSSSPGTYV-------GPPGGGGPPGTPIMPSPADSTN-S 290
M G P PN + IPY+ S G V GPPG GP G P P
Sbjct: 27 MPTGIKGPLPNTKTQFFIPYTIKSKGIAVRGEQGTPGPPGPAGPRGHPGPSGPPGKPGYG 86
Query: 291 SDNIYTMIN-PVPPGGSR------SNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGL 343
S + P PPG S P PG GP G G + P + G G G+
Sbjct: 87 SPGLQGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGPPGPPGI 146
Query: 344 PKNSPNNISGISNPPGTPRDDGELGGNFLHSFQNDNYSPSM 384
P P IS PG P G G F + +P +
Sbjct: 147 P--GPAGIS----VPGKPGQQGPTGAPGPRGFPGEKGAPGV 181
Score = 30.4 bits (67), Expect = 2.8
Identities = 29/95 (30%), Positives = 35/95 (36%), Gaps = 20/95 (21%)
Query: 100 PVLGNIPPNDGMPGGPIPPGFF----------QGPPGSQPSPH---AQPPPHNPSSMMGP 146
P + P + G PG P PPG GPPG P P +P P GP
Sbjct: 457 PGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPG-PPGPRGHSGEPGLPGPPGPPGP 515
Query: 147 HSQPFMSPRY-AGGPRP-----PIRMGNQPPGGVP 175
Q M + G RP P+ NQ G+P
Sbjct: 516 PGQAVMPEGFIKAGQRPSLSGTPLVSANQGVTGMP 550
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 81.3 bits (199), Expect = 1e-15
Identities = 95/305 (31%), Positives = 115/305 (37%), Gaps = 41/305 (13%)
Query: 110 GMPGGPIPPGF--FQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAG--GPR-PPI 164
G PG PPG GP GS SP Q PP P + G + + P G GP PP
Sbjct: 650 GEPGPHGPPGVPGSVGPKGSSGSPGPQGPP-GPVGLQGLRGEVGL-PGVKGDKGPMGPPG 707
Query: 165 RMGNQ----------PPG--GVPGT--QPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMG 210
G+Q PG G+PG +P +M P GH G P G
Sbjct: 708 PKGDQGEKGPRGLTGEPGMRGLPGAVGEPGAKGAMGPAGPDGHQGPRGEQGLTGMPGIRG 767
Query: 211 PMGPGPQNYGSGMRPPPNSLG----PAMPGINMGPGA-GRPWPNPNSAN-SIPYSSSSPG 264
P GP G+ P G P PGI PGA G+ + S+ ++P PG
Sbjct: 768 PPGPSGDPGKPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSSMLTVPGPPGPPG 827
Query: 265 TYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMG--G 322
+GPPG PPG P PA + + P PPG P PG GP G G
Sbjct: 828 A-MGPPG---PPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPGPRGPPG 883
Query: 323 MGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQNDNYSP 382
G P GS S NS +SG PPG P G+ G Q + P
Sbjct: 884 EGLPGPPGPPGSFLS--------NSETFLSGPPGPPGPPGPKGDQGPPGPRGHQGEQGLP 935
Query: 383 SMTMS 387
+ S
Sbjct: 936 GFSTS 940
Score = 74.3 bits (181), Expect = 2e-13
Identities = 79/278 (28%), Positives = 99/278 (35%), Gaps = 37/278 (13%)
Query: 100 PVLGNIPPNDGMPGGP--IPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYA 157
P + P G PG P P QG PG+ P + P P ++ ++
Sbjct: 763 PGIRGPPGPSGDPGKPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSSMLT--VP 820
Query: 158 GGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQ 217
G P PP MG P G PG P G P + PP GP GP
Sbjct: 821 GPPGPPGAMGPPGPPGAPG----------PAGPAGLPGHQEVLNLQGPPGPPGPRGPP-- 868
Query: 218 NYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPG 277
G + PP GP G+ PG P +NS + S P GPPG GP G
Sbjct: 869 --GPSIPGPPGPRGPPGEGLPGPPGP----PGSFLSNSETFLSGPP----GPPGPPGPKG 918
Query: 278 TPIMPSPADSTNSSDNIYTMINPVPPGGSRS---NFPMGPGSDGPMGGMGGMEPHHMNGS 334
P P + GS S N PG GP G G + G+
Sbjct: 919 DQGPPGPRGHQGEQG-----LPGFSTSGSSSFGLNLQGPPGPPGPQGPKGDKGDPGVPGA 973
Query: 335 LG--SGDIDGLPKNSPNNISGISNPPGTPRDDGELGGN 370
LG SG +G +S +SG PPG P G + +
Sbjct: 974 LGIPSGPSEG-GSSSTMYVSGPPGPPGPPGPPGSISSS 1010
Score = 68.2 bits (165), Expect = 1e-11
Identities = 82/273 (30%), Positives = 101/273 (36%), Gaps = 55/273 (20%)
Query: 98 PSPVLGNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYA 157
P P PP G PG P P G G PG Q + Q PP P GP P S
Sbjct: 823 PGPPGAMGPP--GPPGAPGPAGP-AGLPGHQEVLNLQGPPGPP----GPRGPPGPSIPGP 875
Query: 158 GGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGP-GP 216
GPR P G P G PG+ L NS T G P G PP G GP GP
Sbjct: 876 PGPRGPPGEGLPGPPGPPGS--FLSNS--ETFLSGPPGPPG------PPGPKGDQGPPGP 925
Query: 217 QNY-GSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGP 275
+ + G P ++ G + G+N+ G P P GP G G
Sbjct: 926 RGHQGEQGLPGFSTSGSSSFGLNLQGPPGPPGPQ------------------GPKGDKGD 967
Query: 276 PGTPI---MPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMN 332
PG P +PS SS +Y P PPG PG G + G +++
Sbjct: 968 PGVPGALGIPSGPSEGGSSSTMYVSGPPGPPG--------PPGPPGSISSSGQEIQQYIS 1019
Query: 333 GSLGSGDIDGLPKNSPNNISGISNPPGTPRDDG 365
+ S I + +SG+ PPG P G
Sbjct: 1020 EYMQSDSI-------RSYLSGVQGPPGPPGPPG 1045
Score = 55.5 bits (132), Expect = 8e-08
Identities = 67/233 (28%), Positives = 78/233 (33%), Gaps = 42/233 (18%)
Query: 158 GGPRPPIRMGNQPPGG---VPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGP 214
G P P MG+ P G PGT P +P + QG GS+ P GPMG
Sbjct: 567 GSPGPKGDMGSPGPKGDRGFPGT-PGIPGPLGHPGPQGPKGQKGSV---GDPGMEGPMG- 621
Query: 215 GPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGG 274
Q G P GP G GA P P+ +P S VGP G G
Sbjct: 622 --QRGREGPMGPRGEAGPPGSGEKGERGAAGE-PGPHGPPGVPGS-------VGPKGSSG 671
Query: 275 PPGTPIMPSPADSTNSSDNI---------YTMINPVPPGGSRSNFPMG----------PG 315
PG P P + M P P G P G PG
Sbjct: 672 SPGPQGPPGPVGLQGLRGEVGLPGVKGDKGPMGPPGPKGDQGEKGPRGLTGEPGMRGLPG 731
Query: 316 SDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
+ G G G M P +G G GL + GI PPG D G+ G
Sbjct: 732 AVGEPGAKGAMGPAGPDGHQGPRGEQGL-----TGMPGIRGPPGPSGDPGKPG 779
Score = 42.0 bits (97), Expect = 0.001
Identities = 76/329 (23%), Positives = 106/329 (32%), Gaps = 74/329 (22%)
Query: 105 IPPNDGMPGGPIPPG-----FFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGG 159
+P G+P GP G + GPPG P P P S G Q ++S
Sbjct: 970 VPGALGIPSGPSEGGSSSTMYVSGPPG----PPGPPGPPGSISSSGQEIQQYISEYMQSD 1025
Query: 160 PRPPIRMGNQPPGGVPG----TQPLLPNSMDPTRQQGH-------PNMGGSM-------- 200
G Q P G PG + + D + H G S+
Sbjct: 1026 SIRSYLSGVQGPPGPPGPPGPVTTITGETFDYSELASHVVSYLRTSGYGVSLFSSSISSE 1085
Query: 201 ----------------QRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAG 244
Q + PRG P PG GS + L + G
Sbjct: 1086 DILAVLQRDDVRQYLRQYLMGPRGP-PGPPGASGDGSLLSLDYAELSSRILSYMSSSGIS 1144
Query: 245 RPWPNPNSANSIPYSS----------SSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNI 294
P P +P +S S VGPPG GPPG +P S+ S +++
Sbjct: 1145 IGLPGPPGPPGLPGTSYEELLSLLRGSEFRGIVGPPGPPGPPG---IPGNVWSSISVEDL 1201
Query: 295 YTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPK--------- 345
+ ++ + PG GP G G P ++G+L + +
Sbjct: 1202 SSYLHT-------AGLSFIPGPPGPPGPPGPRGPPGVSGALATYAAENSDSFRSELISYL 1254
Query: 346 NSPNNISGISNPPGTPRDDGELGGNFLHS 374
SP+ S I PPG P G G + L S
Sbjct: 1255 TSPDVRSFIVGPPGPPGPQGPPGDSRLLS 1283
Score = 40.8 bits (94), Expect = 0.002
Identities = 31/104 (29%), Positives = 38/104 (36%), Gaps = 13/104 (12%)
Query: 268 GPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMG-PGSDGPMGGMGGM 326
GP G G PGTP +P P + +P P G +G PG +GPMG G
Sbjct: 579 GPKGDRGFPGTPGIPGP------------LGHPGPQGPKGQKGSVGDPGMEGPMGQRGRE 626
Query: 327 EPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGN 370
P G G + G PPG P G G +
Sbjct: 627 GPMGPRGEAGPPGSGEKGERGAAGEPGPHGPPGVPGSVGPKGSS 670
Score = 37.0 bits (84), Expect = 0.030
Identities = 68/303 (22%), Positives = 89/303 (29%), Gaps = 82/303 (27%)
Query: 110 GMPGGPIPPG------------------------FFQGPPGSQPSPHAQPPPHNPSSMMG 145
G PG P PPG F GPPG P P P P + G
Sbjct: 1178 GPPGPPGPPGIPGNVWSSISVEDLSSYLHTAGLSFIPGPPG----PPGPPGPRGPPGVSG 1233
Query: 146 -------PHSQPFMSPRYAGGPRPPIRM------GNQPPGGVPGTQPLLPNSMDPTRQQG 192
+S F S + P +R G P G PG LL +R
Sbjct: 1234 ALATYAAENSDSFRSELISYLTSPDVRSFIVGPPGPPGPQGPPGDSRLLSTDASHSRGSS 1293
Query: 193 HPNMGGSMQR---MNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWP- 248
+ S++R + G G G G GP G ++GPG G
Sbjct: 1294 SSSHSSSVRRGSSYSSSMSTGGGGAGSLGAGGAFGEAAGDRGPY--GTDIGPGGGYGAAA 1351
Query: 249 ------------NPNSANSIPYS----------------SSSPGTYVGPPGGGGPPGTP- 279
+ A + Y+ T GPPG GP G P
Sbjct: 1352 EGGMYAGNGGLLGADFAGDLDYNELAVRVSESMQRQGLLQGMAYTVQGPPGQPGPQGPPG 1411
Query: 280 ---IMPSPADSTNSSDNIYTMINPV--PPGGSRSNFPMGP-GSDGPMGGMGGMEPHHMNG 333
+ + ++ T + + + PPG GP G GP G G P G
Sbjct: 1412 ISKVFSAYSNVTADLMDFFQTYGAIQGPPGQKGEMGTPGPKGDRGPAGPPGHPGPPGPRG 1471
Query: 334 SLG 336
G
Sbjct: 1472 HKG 1474
Score = 35.4 bits (80), Expect = 0.088
Identities = 54/216 (25%), Positives = 75/216 (34%), Gaps = 35/216 (16%)
Query: 155 RYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGP 214
+Y GPR P P G G LL + M S + P GP G
Sbjct: 1102 QYLMGPRGP-----PGPPGASGDGSLLSLDYAELSSRILSYMSSSGISIGLPGPPGPPGL 1156
Query: 215 GPQNY--------GS---GMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSP 263
+Y GS G+ PP GP PGI G W + + + Y ++
Sbjct: 1157 PGTSYEELLSLLRGSEFRGIVGPPGPPGP--PGI-----PGNVWSSISVEDLSSYLHTAG 1209
Query: 264 GTYV-------GPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGS 316
+++ GPPG GPPG + + NS +I+ + RS PG
Sbjct: 1210 LSFIPGPPGPPGPPGPRGPPGVSGALATYAAENSDSFRSELISYLTSPDVRSFIVGPPGP 1269
Query: 317 DGPMGGMG-----GMEPHHMNGSLGSGDIDGLPKNS 347
GP G G + H GS S + + S
Sbjct: 1270 PGPQGPPGDSRLLSTDASHSRGSSSSSHSSSVRRGS 1305
Score = 32.3 bits (72), Expect = 0.75
Identities = 61/225 (27%), Positives = 84/225 (37%), Gaps = 55/225 (24%)
Query: 110 GMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQ 169
G+PG P PPG PG+ S + G + + P P PP
Sbjct: 1146 GLPGPPGPPGL----PGTSYEELL-------SLLRGSEFRGIVGP-----PGPP------ 1183
Query: 170 PPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNS 229
P G+PG + +S+ + + G PP GP G PP
Sbjct: 1184 GPPGIPGN---VWSSISVEDLSSYLHTAGLSFIPGPP---GPPG------------PPGP 1225
Query: 230 LGPAMPGINMGPGAGRPWPNPNSANS--IPYSSSSP--GTYVGPPGGGGPPGTP-----I 280
GP PG++ G A N +S S I Y +S VGPPG GP G P +
Sbjct: 1226 RGP--PGVS-GALATYAAENSDSFRSELISYLTSPDVRSFIVGPPGPPGPQGPPGDSRLL 1282
Query: 281 MPSPADSTNSSDNIYTMINPVPPGGS-RSNFPMGPGSDGPMGGMG 324
+ S SS + ++ + V G S S+ G G G +G G
Sbjct: 1283 STDASHSRGSSSSSHS--SSVRRGSSYSSSMSTGGGGAGSLGAGG 1325
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 80.1 bits (196), Expect = 3e-15
Identities = 86/271 (31%), Positives = 101/271 (37%), Gaps = 30/271 (11%)
Query: 102 LGNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPR 161
L +P G PG P PG G GS P P P G QP + P + G P
Sbjct: 1075 LPGLPGPKGEPGLPGYPGN-PGIKGSVGDPGLPGLPGTP----GAKGQPGL-PGFPGTPG 1128
Query: 162 PPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGS 221
PP G P G PG LP P GHP G P G GP Q
Sbjct: 1129 PPGPKGISGPPGNPG----LPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEP 1184
Query: 222 GMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIM 281
G N P +PG++ G G P +P PG + G PG GPPG P
Sbjct: 1185 GQPGFGNPGPPGLPGLSGQKGDG-GLPGIPGNPGLPGPKGEPG-FHGFPGVQGPPGPPGS 1242
Query: 282 PSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMG--GMGGMEPHHMNGSLGSGD 339
P PA NP P G P PG +GP G G GG++ G+ G
Sbjct: 1243 PGPALEGPKG-------NPGPQG--PPGRPGLPGPEGPPGLPGNGGIKGE--KGNPGQPG 1291
Query: 340 IDGLPKNSPNNISGISNPPGTPRDDGELGGN 370
+ GLP + G PPG + G G N
Sbjct: 1292 LPGLP-----GLKGDQGPPGLQGNPGRPGLN 1317
Score = 79.0 bits (193), Expect = 7e-15
Identities = 88/288 (30%), Positives = 107/288 (37%), Gaps = 39/288 (13%)
Query: 106 PPNDGMPG-----GPI-PPGFFQGPPGSQPSPHAQPPPHNPSS--MMGPHSQPFMSPRYA 157
P N G+PG GP+ PPGF GPPG Q NP + GP P +
Sbjct: 605 PGNPGLPGLPGNIGPMGPPGF--GPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQP 662
Query: 158 GGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMG-PMGPGP 216
G P P G G+PG P LP Q G P + GS P G+G P PGP
Sbjct: 663 GKPGLPGNPGRDGDVGLPG-DPGLPG------QPGLPGIPGSKGEPGIP-GIGLPGPPGP 714
Query: 217 QNYGSGMRPPPNSLG-PAMPGINMGPGA-GRPWPNPNSANSIPYSSSSPGT--------- 265
+ + G+ PP + G P G+ PG G P P ++P PG
Sbjct: 715 KGF-PGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGP 773
Query: 266 -----YVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPM 320
+ GPPG G G +P P + M P PG P PG GP+
Sbjct: 774 KGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPI 833
Query: 321 GGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
G G H + G G GL P G PG P G G
Sbjct: 834 GQPG---LHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPG 878
Score = 78.6 bits (192), Expect = 9e-15
Identities = 99/315 (31%), Positives = 119/315 (37%), Gaps = 56/315 (17%)
Query: 93 SAAAAPSPVLGNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFM 152
S A P L P DG+PG P P +G PG + PP NP P + M
Sbjct: 565 SPGAPGLPGLPGTPGQDGLPGLPGP----KGEPGGITFKGERGPPGNPGLPGLPGNIGPM 620
Query: 153 SPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSM-DPTR---QQGHPNMGGSMQRMNPPRG 208
P G P P G Q G PG QP +P DP + Q G P + G NP R
Sbjct: 621 GPPGFGPPGPVGEKGIQGVAGNPG-QPGIPGPKGDPGQTITQPGKPGLPG-----NPGRD 674
Query: 209 MGPMG-PGPQNYGS--GMRPPPNSLG-PAMPGINMGPGAGRPWPNPNSANSIPYSSSSPG 264
G +G PG G+ P S G P +PGI + PG P P IP +PG
Sbjct: 675 -GDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGL-PGP----PGPKGFPGIPGPPGAPG 728
Query: 265 TYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPG-----------GSRSNFPMG 313
T G G GPPG P P P P PPG G R FP
Sbjct: 729 T-PGRIGLEGPPGPPGFPGP----KGEPGFALPGPPGPPGLPGFKGALGPKGDRG-FPGP 782
Query: 314 PGS------DGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGEL 367
PG DG G G + P+ G +G + G+ + G PPG P G +
Sbjct: 783 PGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGI------GVQGPPGPPGIP---GPI 833
Query: 368 GGNFLHSFQNDNYSP 382
G LH + P
Sbjct: 834 GQPGLHGIPGEKGDP 848
Score = 75.9 bits (185), Expect = 6e-14
Identities = 90/319 (28%), Positives = 104/319 (32%), Gaps = 69/319 (21%)
Query: 103 GNIPPNDGMPGGPIPPGF----FQGPPGSQ--PSPHAQPPPHNPSSMMGPHSQPFMSPRY 156
G++ PN G PG PPG QGPPG P P QP H G P +
Sbjct: 799 GDVGPN-GQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDV-- 855
Query: 157 AGGPRPPIRMGNQPPGGVPGT--QPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG- 213
P PP G+ G PG P P G P G M M PP GP+G
Sbjct: 856 ---PGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGI 912
Query: 214 ---------------------PGPQNYGSGMRPP----------PNSLG-------PAMP 235
PGP P PN LG P +P
Sbjct: 913 PGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLP 972
Query: 236 GINMGPGAGRPWPNPNSANSIPYSSSSPGT-----YVGPPGGGGPPGTPIMPSPADSTNS 290
GI PG P +P PG GPPG G PG P P
Sbjct: 973 GI---PGVS----GPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGL 1025
Query: 291 SDNIYTMINPVPPGGSRSNFPMG-PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPN 349
I M P P G P G PG G G+ G + + + S + GLP P
Sbjct: 1026 KGTIGDMGFPGPQGVEGPPGPSGVPGQPG-SPGLPGQKGDKGDPGISSIGLPGLP--GPK 1082
Query: 350 NISGISNPPGTPRDDGELG 368
G+ PG P G +G
Sbjct: 1083 GEPGLPGYPGNPGIKGSVG 1101
Score = 75.5 bits (184), Expect = 8e-14
Identities = 91/290 (31%), Positives = 114/290 (39%), Gaps = 74/290 (25%)
Query: 102 LGNIPPNDGMPGGPIPPGFF-----QGPPGSQPSPHAQPPPHNPS-SMMGPHSQPFMSPR 155
L IP N G+PG PGF QGPPG PP +P ++ GP P
Sbjct: 1209 LPGIPGNPGLPGPKGEPGFHGFPGVQGPPG---------PPGSPGPALEGPKGNP----- 1254
Query: 156 YAGGPR-PPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGP 214
GP+ PP R G P G PG LP + ++G+P G P G GP
Sbjct: 1255 ---GPQGPPGRPGLPGPEGPPG----LPGNGGIKGEKGNPGQPGLP---GLPGLKGDQGP 1304
Query: 215 GPQNYGSGMRPPPNSL--GPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGG 272
P G+ RP N + P +PG+ PG P P SA G PG
Sbjct: 1305 -PGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGP-----------EGEPGL 1352
Query: 273 GGPPGTPIMPSPADSTNSSDNIYTMINPVPPG-----GSRS----NFPMG-PGSDGPMG- 321
GPPG P +P P S +I + PPG G + P G PG GP G
Sbjct: 1353 IGPPGPPGLPGP-----SGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGD 1407
Query: 322 ----------GMGGME-PHHMNGSLGSGDIDGLPKNSPNNISGISNPPGT 360
G GG + + G G+ +DG P P+ + G PPGT
Sbjct: 1408 PGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPP--GPDGLQGPPGPPGT 1455
Score = 75.1 bits (183), Expect = 1e-13
Identities = 87/291 (29%), Positives = 104/291 (35%), Gaps = 27/291 (9%)
Query: 100 PVLGNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGG 159
P L +P G G P PG F G PG PP NP P P + G
Sbjct: 1103 PGLPGLPGTPGAKGQPGLPG-FPGTPGPPGPKGISGPPGNPGLPGEP--GPVGGGGHPGQ 1159
Query: 160 PRPPIRMGNQPPGGVPGT-----QPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG- 213
P PP G G+PG +P P +P G P + G P G G
Sbjct: 1160 PGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNP-GPPGLPGLSGQKGDGGLPGIPGNPGL 1218
Query: 214 PGPQN----YG----SGMRPPPNSLGPAMPGINMGPG----AGRP-WPNPNSANSIPYSS 260
PGP+ +G G PP S GPA+ G PG GRP P P +P +
Sbjct: 1219 PGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGLPGPEGPPGLPGNG 1278
Query: 261 SSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNI-YTMINPVPPGGSRSNFPMGPGSDGP 319
G G PG G PG P + N +N + P PG GP
Sbjct: 1279 GIKGE-KGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGP 1337
Query: 320 MGGMGGMEPHHMNGSLGSGDIDGLPKNSPNN--ISGISNPPGTPRDDGELG 368
G G P G +G GLP S + I G + PPG P G G
Sbjct: 1338 SGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKG 1388
Score = 74.7 bits (182), Expect = 1e-13
Identities = 85/295 (28%), Positives = 103/295 (34%), Gaps = 41/295 (13%)
Query: 99 SPVLGNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQP-------F 151
S ++ ++P G PG P PPG QG PG P PP P +MGP P
Sbjct: 160 SIIMSSLPGPKGNPGYPGPPG-IQGLPGPTGIPGPIGPP-GPPGLMGPPGPPGLPGPKGN 217
Query: 152 MSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGP 211
M + G G Q P G PG +D Q+G + G PP GP
Sbjct: 218 MGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGP 277
Query: 212 MG-PGPQNYGSGMRPPPNSLG-PAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGP 269
G PG + G + P G P G N PG IP PG Y G
Sbjct: 278 PGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPG-------------IPGLPGDPG-YPGE 323
Query: 270 P---------GGGGPPGTP--IMPSPADSTNSSDNIYTMINPVPPGGSRSNFP---MGPG 315
P G GPPG P ++P P + + +P FP PG
Sbjct: 324 PGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPG 383
Query: 316 SDGPMGG--MGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
GP G MG P G G +G P S G+ PG P G G
Sbjct: 384 LPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPG 438
Score = 73.6 bits (179), Expect = 3e-13
Identities = 85/297 (28%), Positives = 103/297 (34%), Gaps = 30/297 (10%)
Query: 94 AAAAPSPVLGNIPPNDGMPGGPIPPGF-FQGPPG--SQPSPHAQPPPHNPSSMMGPHSQP 150
AA P P G G PPG GPPG QP P P P+ GPH P
Sbjct: 390 AAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPA---GPHIPP 446
Query: 151 FMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMD------------PTRQQGHPNMGG 198
G P PP G+ G+ G Q + + D P Q G P + G
Sbjct: 447 SDEICEPGPPGPP---GSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPG 503
Query: 199 SMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLG-PAMPGINMGPGAGRPWPNPNSANSIP 257
+ P G G G+ P + G P PG PG +P
Sbjct: 504 PPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGEL 563
Query: 258 YSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNS---SDNIYTMINPVPPGGSRSNFPMGP 314
S +PG G PG G G P +P P NP PG + PMGP
Sbjct: 564 GSPGAPG-LPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGP 622
Query: 315 GSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNI---SGISNPPGTPRDDGELG 368
GP G +G + G+ G I G PK P G PG P DG++G
Sbjct: 623 PGFGPPGPVGEKGIQGVAGNPGQPGIPG-PKGDPGQTITQPGKPGLPGNPGRDGDVG 678
Score = 72.4 bits (176), Expect = 7e-13
Identities = 80/268 (29%), Positives = 102/268 (38%), Gaps = 47/268 (17%)
Query: 110 GMPGGPIPPGFFQGPPG--SQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMG 167
G+PG P P +GPPG Q P P P + GP P P G P P G
Sbjct: 60 GLPGFPGP----EGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGF-PGTPGLPGMPGHDG 114
Query: 168 NQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPP 227
P G+PG ++G P G PP GP G GM+ P
Sbjct: 115 APGPQGIPGCN-------GTKGERGFPGSPGFPGLQGPP---GPPGI------PGMKGEP 158
Query: 228 NSL-GPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTY--VGPPGGGGPPGTPIMPSP 284
S+ ++PG PG +P P +P + PG GPPG GPPG P +P P
Sbjct: 159 GSIIMSSLPGPKGNPG----YPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGP 214
Query: 285 ADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGM--EPHHMNGSLGSGDIDG 342
+ +N P G + G GP G G + + ++ GD G
Sbjct: 215 KGNMG--------LNFQGPKGEKGE----QGLQGPPGPPGQISEQKRPIDVEFQKGD-QG 261
Query: 343 LP-KNSPNNISGISNPPGTP-RDDGELG 368
LP P GI PPG P + GE G
Sbjct: 262 LPGDRGPPGPPGIRGPPGPPGGEKGEKG 289
Score = 58.9 bits (141), Expect = 7e-09
Identities = 59/189 (31%), Positives = 70/189 (37%), Gaps = 30/189 (15%)
Query: 191 QGHPNMGGSMQRMNPPRGMGPMG----PGPQNYGSGMRPPPNSLG----PAMPGINMGPG 242
+GHP + G PP G G PGP G+R PP G P +PG+ G
Sbjct: 56 EGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPG-PKGIRGPPGLPGFPGTPGLPGMPGHDG 114
Query: 243 AGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVP 302
A P P N PG+ G PG GPPG P +P S I P P
Sbjct: 115 APGPQGIPG-CNGTKGERGFPGS-PGFPGLQGPPGPPGIPGMKGEPGS---IIMSSLPGP 169
Query: 303 PGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPR 362
G PG GP G G P + G +G P + G PPG P
Sbjct: 170 KGN--------PGYPGPPGIQGLPGPTGIPGPIGPP--------GPPGLMGPPGPPGLPG 213
Query: 363 DDGELGGNF 371
G +G NF
Sbjct: 214 PKGNMGLNF 222
Score = 40.0 bits (92), Expect = 0.004
Identities = 39/124 (31%), Positives = 44/124 (35%), Gaps = 10/124 (8%)
Query: 268 GPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPG--GSRS-----NFPMGPGSDGPM 320
G PG G PG P P P P PPG G R FP PG G
Sbjct: 51 GFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMP 110
Query: 321 GGMGGMEPHHMNGSLGSGDIDGLPKNSPN--NISGISNPPGTPRDDGELGGNFLHSFQND 378
G G P + G G+ G P SP + G PPG P GE G + S
Sbjct: 111 GHDGAPGPQGIPGCNGTKGERGFP-GSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGP 169
Query: 379 NYSP 382
+P
Sbjct: 170 KGNP 173
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 79.3 bits (194), Expect = 5e-15
Identities = 88/271 (32%), Positives = 104/271 (38%), Gaps = 48/271 (17%)
Query: 106 PPNDGMPGGPIPPGFFQGPPG-SQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPI 164
PP P GP P F G PG +P H QP P P F AG P P
Sbjct: 81 PPGKPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPG--------FSRMGKAGPPGLPG 132
Query: 165 RMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG-PGPQNYGSGM 223
++G P G PG +G P + G PP GP G PGP SG+
Sbjct: 133 KVG---PPGQPGL-------------RGEPGIRGDQGLRGPP---GPPGLPGP----SGI 169
Query: 224 RPP--PNSLG-PAMPGINMGPG-AGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTP 279
P P + G P PG PG G P P + PG G PG GG PG P
Sbjct: 170 TIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPG-LPGAPGQGGAPGPP 228
Query: 280 IMPSPAD-STNSSDNIYTMINPVPPGGSRSNFPMG-PGSDGPMGGMGGMEPHHMNGSLGS 337
+P PA D + P PG + P G PG G G +G P ++G +G
Sbjct: 229 GLPGPAGLGKPGLDGL-----PGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDG-VGV 282
Query: 338 GDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
GLP P SG PGT G +G
Sbjct: 283 PGAAGLP--GPQGPSGAKGEPGTRGPPGLIG 311
Score = 77.0 bits (188), Expect = 3e-14
Identities = 88/278 (31%), Positives = 106/278 (38%), Gaps = 51/278 (18%)
Query: 98 PSPVLGNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPH--SQPFM--S 153
P P IP G G P PPG FQG PG P +P P + G + QP + +
Sbjct: 164 PGPSGITIPGKPGAQGVPGPPG-FQGEPG----PQGEPGPPGDRGLKGDNGVGQPGLPGA 218
Query: 154 PRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG 213
P G P PP G+PG L +D G P G PP GP G
Sbjct: 219 PGQGGAPGPP---------GLPGPAGLGKPGLD-----GLPGAPGDKGESGPPGVPGPRG 264
Query: 214 -PGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGG 272
PG G + PP G +PG AG P P S + PGT GPPG
Sbjct: 265 EPG----AVGPKGPPGVDGVGVPG-----AAGLPGPQGPSG-----AKGEPGTR-GPPGL 309
Query: 273 GGPP--GTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHH 330
GP G P +P P + + + PG PG GP G+GG P
Sbjct: 310 IGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGE-----PGEQGPQ-GLGG--PPG 361
Query: 331 MNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
+ GS G G P P +G PPG P G+ G
Sbjct: 362 LPGSAGLPGRRGPP--GPKGEAGPGGPPGVPGIRGDQG 397
Score = 69.7 bits (169), Expect = 4e-12
Identities = 87/309 (28%), Positives = 111/309 (35%), Gaps = 58/309 (18%)
Query: 98 PSPVLGNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMS---- 153
P P P DG+PG P G GPPG P P +P +GP P +
Sbjct: 231 PGPAGLGKPGLDGLPGAPGDKGE-SGPPGV-PGPRGEP------GAVGPKGPPGVDGVGV 282
Query: 154 PRYAGGPRPPIRMGNQ-------PPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPP 206
P AG P P G + PPG + T +P P +G + G + P
Sbjct: 283 PGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEP 342
Query: 207 RGMGPMGP-GPQNYGS-----------GMRPPPNSLG-------PAMPGI--NMGPG--A 243
G G GPQ G G R PP G P +PGI + GP A
Sbjct: 343 GEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLA 402
Query: 244 GRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPP 303
G+P +P PG + GPPG GP G P + + + P
Sbjct: 403 GKP--------GVPGERGLPGAH-GPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLP 453
Query: 304 GGSRSNFPMG-PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP---KNSPNNISGISNPPG 359
G P G PG GP G +G P + G G + G P + +G + PPG
Sbjct: 454 GQPGLRGPSGIPGLQGPAGPIG---PQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPG 510
Query: 360 TPRDDGELG 368
P G G
Sbjct: 511 VPGSPGITG 519
Score = 64.3 bits (155), Expect = 2e-10
Identities = 74/273 (27%), Positives = 90/273 (32%), Gaps = 61/273 (22%)
Query: 106 PPNDGMPGGPIPPGFFQGPPG--------SQPSPHAQPPPHNPSSMMGPHSQPFMSPRYA 157
P GMPG P P G +GP G +P +P P + GP P S
Sbjct: 312 PTGYGMPGLPGPKGD-RGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPG-SAGLP 369
Query: 158 GGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGP--- 214
G PP G PGG PG P + P+ G P + G GP GP
Sbjct: 370 GRRGPPGPKGEAGPGGPPGV-PGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGE 428
Query: 215 --------GPQNYGS----------------------GMRPPPNSLGP-------AMPGI 237
GP G+ G++ P +GP PG+
Sbjct: 429 PGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGL 488
Query: 238 NMGPGAGRPW-PNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYT 296
PG GR P P SPG GPPG GPPG P P D T
Sbjct: 489 PGPPGEGRAGEPGTAGPTGPPGVPGSPGI-TGPPGPPGPPGPPGAPGAFDETG------- 540
Query: 297 MINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPH 329
+ P G +G G P G+G + H
Sbjct: 541 IAGLHLPNGGVEGAVLGKGGK-PQFGLGELSAH 572
Score = 35.4 bits (80), Expect = 0.088
Identities = 31/102 (30%), Positives = 34/102 (33%), Gaps = 6/102 (5%)
Query: 267 VGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGM 326
VGPP G MP P + P PPG P GP GMG
Sbjct: 52 VGPPFREGKGQYLEMPLPLLPMDLKGE------PGPPGKPGPRGPPGPPGFPGKPGMGKP 105
Query: 327 EPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
H G G + K P + G PPG P GE G
Sbjct: 106 GLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPG 147
Score = 29.3 bits (64), Expect = 6.3
Identities = 24/72 (33%), Positives = 27/72 (37%), Gaps = 16/72 (22%)
Query: 105 IPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPI 164
+P G PG P PPG +G G + PP P SP G P PP
Sbjct: 479 LPGLKGEPGLPGPPG--EGRAGEPGTAGPTGPPGVPG-----------SPGITGPPGPP- 524
Query: 165 RMGNQPPGGVPG 176
G P G PG
Sbjct: 525 --GPPGPPGAPG 534
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 78.6 bits (192), Expect = 9e-15
Identities = 86/284 (30%), Positives = 98/284 (34%), Gaps = 63/284 (22%)
Query: 106 PPNDGMPGGPIPPGF--------FQGPPGS--QPSPHAQPPPHNPSSMMGPHSQPFMSPR 155
P G PG P PG +GP G P + P P MGP + PR
Sbjct: 284 PGARGFPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGP-----LGPR 338
Query: 156 YAGGPRPPIRMGNQPPGGVPGTQ-----PLLPNSMDPTR---QQGHPNMGGSMQRMNPPR 207
G R G P G PG + P P M P G P G P
Sbjct: 339 GMPGER-----GRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTG 393
Query: 208 GMGPMGPGPQNYGSGMRPPPNSLG-PAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTY 266
GP GP Q +G P S G P G + PGA P + SPGT
Sbjct: 394 ARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGP-------------TGSPGTS 440
Query: 267 VGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRS--NFPMGPGSDGPMGGMG 324
GPPG GPPG+ P P ST P G R P PG G G G
Sbjct: 441 -GPPGSAGPPGS---PGPQGSTG-------------PQGIRGQPGDPGVPGFKGEAGPKG 483
Query: 325 GMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
PH + G +G +G K P G PPG + G G
Sbjct: 484 EPGPHGIQGPIGPPGEEG--KRGPRGDPGTVGPPGPVGERGAPG 525
Score = 72.8 bits (177), Expect = 5e-13
Identities = 80/269 (29%), Positives = 101/269 (37%), Gaps = 38/269 (14%)
Query: 112 PGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPP 171
P GP+ G G+ +P A+ P +P + GP P AG P P G+ P
Sbjct: 409 PPGPVGSPGLPGAIGTDGTPGAKGPTGSPGTS-GP-------PGSAGPPGSPGPQGSTGP 460
Query: 172 GGVPGT--QPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNS 229
G+ G P +P +G P G + PP G GP G PP
Sbjct: 461 QGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGD---PGTVGPPGP 517
Query: 230 LGP-AMPGINMGPGA-GRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADS 287
+G PG PG+ G P P P SS P G PG G PG +P
Sbjct: 518 VGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPGEPG---LPGARGL 574
Query: 288 TNSSDNIYTMINPVPPGGSRSNFPMG-PGSDGPMGGMGGMEPHHMNGSLG-------SGD 339
T NP G P+G PG DG G G + GS+G SGD
Sbjct: 575 TG---------NPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGD 625
Query: 340 IDGLPKNSPNNISGISNPPGTPRDDGELG 368
G P + N +G+ G P DGE+G
Sbjct: 626 -PGKPGEAGN--AGVPGQRGAPGKDGEVG 651
Score = 69.3 bits (168), Expect = 6e-12
Identities = 81/286 (28%), Positives = 104/286 (36%), Gaps = 51/286 (17%)
Query: 110 GMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQ 169
G PG PPG QGP G + P +P P P + G +P + P G P PP +
Sbjct: 129 GRPGPAGPPGS-QGPRGER-GPKGRPGPRGPQGIDG---EPGV-PGQPGAPGPPGHPSHP 182
Query: 170 PPGGVP----------------GTQP-LLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPM 212
P G+ G+Q L+P S+ P +G + G G GP
Sbjct: 183 GPDGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQ------GGAGPT 236
Query: 213 GPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGT--YVGPP 270
GP + G P S GP P P + P + +PG + G P
Sbjct: 237 GPPGEPGDPGPMGPIGSRGPEGP------------PGKPGEDGEPGRNGNPGEVGFAGSP 284
Query: 271 GGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGP-GSDGPMG--GM---- 323
G G PG P +P PG P GP G+ GP+G GM
Sbjct: 285 GARGFPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGER 344
Query: 324 GGMEPHHMNGSLGSGDIDGLP-KNSPNNISGISNPPGTPRDDGELG 368
G + P G G+ + G P P I G S PG P GE G
Sbjct: 345 GRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAG 390
Score = 69.3 bits (168), Expect = 6e-12
Identities = 90/313 (28%), Positives = 113/313 (36%), Gaps = 55/313 (17%)
Query: 100 PVLGNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMG-PHSQPFMSPRYAG 158
P + +P GM GG P GP GS P P P P + G P +
Sbjct: 722 PGITGLPGEKGMAGGHGP----DGPKGS-PGPSGTPGDTGPPGLQGMPGERGIAGTPGPK 776
Query: 159 GPRPPI-------RMGNQPPGGVPGTQPL-LPNSMDPTRQQGHPNMGGSMQRMNPPRGMG 210
G R I GN G+PG PL P PT ++G P G + PP G
Sbjct: 777 GDRGGIGEKGAEGTAGNDGARGLPG--PLGPPGPAGPTGEKGEPGPRGLV---GPPGSRG 831
Query: 211 PMGPGPQNYGSGMRPPPNSLGP-AMPGINMGPG-------AGRPWPN-------PNSANS 255
G +N +G GP PG+ PG AG P P P+ N
Sbjct: 832 NPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNG 891
Query: 256 IPYSSSSPGTYVGPPGGGGPPGTPIM---PSPADSTNSSDNIYTMINPVPPG-----GSR 307
+P GT GPPG G PG+ P PA + + + PPG GS
Sbjct: 892 VPGLKGGRGTQ-GPPGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSH 950
Query: 308 SNF--------PMGPGSDGPMG--GMGGME-PHHMNGSLGSGDIDGLP-KNSPNNISGIS 355
P GPG G G G G + P G+ G I G+P + + G+
Sbjct: 951 GRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLP 1010
Query: 356 NPPGTPRDDGELG 368
P GTP G G
Sbjct: 1011 GPAGTPGKVGPTG 1023
Score = 64.7 bits (156), Expect = 1e-10
Identities = 79/280 (28%), Positives = 100/280 (35%), Gaps = 58/280 (20%)
Query: 106 PPNDGMPG-----GPIPPGFFQGPPGSQPSPHAQPPPHNPSS--------MMGPHSQ--P 150
P +DG+PG G P GP GSQ P P P + + GP + P
Sbjct: 530 PGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGP 589
Query: 151 FMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRG-- 208
+P G P PP +G + G G +S DP + N G QR P +
Sbjct: 590 LGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGE 649
Query: 209 MGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVG 268
+GP GP +GP PG+ G P P P +P G
Sbjct: 650 VGPSGP---------------VGP--PGLAGERGEQGP-PGPTGFQGLPGPP-------G 684
Query: 269 PPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEP 328
PPG GG PG +P + + P+ P G R N PG G G G
Sbjct: 685 PPGEGGKPGDQGVPGDPGA----------VGPLGPRGERGN----PGERGEPGITGLPGE 730
Query: 329 HHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
M G G G P P+ G + PPG GE G
Sbjct: 731 KGMAGGHGPDGPKGSP--GPSGTPGDTGPPGLQGMPGERG 768
Score = 63.2 bits (152), Expect = 4e-10
Identities = 71/264 (26%), Positives = 89/264 (33%), Gaps = 31/264 (11%)
Query: 112 PGGPIPPGFFQGPPG--SQPSPHAQPPPHNPSSMMGPHSQPFMS--PRYAGGPRPPIRMG 167
P GP+ +GPPG P H + P+ GP P P G P P G
Sbjct: 928 PAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPA---GPPGGPGDKGDPGEDGQPGPD---G 981
Query: 168 NQPPGGVPGTQPL--LPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRP 225
P G G + + +P G P G+ ++ P G GP G
Sbjct: 982 PPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDKGP------PGPVG 1035
Query: 226 PPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTP-IMPSP 284
PP S GP GP P + A PG G PG G PGTP + +P
Sbjct: 1036 PPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGP-AGLPGSQGAPGTPGPVGAP 1094
Query: 285 ADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP 344
D+ D P+ P G + PG GP G G G G GL
Sbjct: 1095 GDAGQRGDP--GSRGPIGPPGRAGKRGL-PGPQGPRGDKGDHGDRGDRGQKGHRGFTGL- 1150
Query: 345 KNSPNNISGISNPPGTPRDDGELG 368
G+ PPG + G G
Sbjct: 1151 -------QGLPGPPGPNGEQGSAG 1167
Score = 59.7 bits (143), Expect = 4e-09
Identities = 81/281 (28%), Positives = 95/281 (33%), Gaps = 27/281 (9%)
Query: 106 PPNDGMPGGPIPPGF--FQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAG--GPR 161
P G PG P PPG GP G AQ + S +G SQ + P G GPR
Sbjct: 164 PGVPGQPGAPGPPGHPSHPGPDGLSRPFSAQMAGLDEKSGLG--SQVGLMPGSVGPVGPR 221
Query: 162 PPI----RMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQ 217
P + G P G PG +P P M P +G G P G G
Sbjct: 222 GPQGLQGQQGGAGPTGPPG-EPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGF 280
Query: 218 NYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPG 277
G R P + P +PG+ G + P P S G GP G GP G
Sbjct: 281 AGSPGARGFPGA--PGLPGLK-GHRGHKGLEGPKGEVGAPGSKGEAGP-TGPMGAMGPLG 336
Query: 278 TPIMPSP--------ADSTNSSDNIYTMINPVPPGG--SRSNFPMGPGSDGPMGGMGGME 327
MP A + + P+ P G S FP PG G G G
Sbjct: 337 PRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARG 396
Query: 328 PHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
P G G G P SP + G GTP G G
Sbjct: 397 PEGPQGQRGETGPPG-PVGSP-GLPGAIGTDGTPGAKGPTG 435
Score = 56.6 bits (135), Expect = 4e-08
Identities = 58/187 (31%), Positives = 71/187 (37%), Gaps = 26/187 (13%)
Query: 108 NDGMPG--GPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGP-RPPI 164
NDG PG G + +G PG P +Q P P + P + GP PP
Sbjct: 1054 NDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPG 1113
Query: 165 RMGNQPPGGVPGTQPLLPNSMD-----PTRQQGHPNMGGSMQRMNPPRGMGPMG----PG 215
R G + G+PG Q + D Q+GH G PP G G PG
Sbjct: 1114 RAGKR---GLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPG 1170
Query: 216 PQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGP 275
P G R PP +GP+ G PG P P S+ + GPPG GP
Sbjct: 1171 P----FGPRGPPGPVGPS--GKEGNPGPLGPIGPPGVRGSVGEAGPE-----GPPGEPGP 1219
Query: 276 PGTPIMP 282
PG P P
Sbjct: 1220 PGPPGPP 1226
Score = 54.7 bits (130), Expect = 1e-07
Identities = 52/183 (28%), Positives = 63/183 (34%), Gaps = 17/183 (9%)
Query: 192 GHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPN 251
G+ N G + G+ P+ G + G PP S GP G + P P
Sbjct: 103 GNTNFGRGRKGQKGEPGLVPVVTGIRGR-PGPAGPPGSQGPR------GERGPKGRPGPR 155
Query: 252 SANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFP 311
I PG PG GPPG P P P + M G S
Sbjct: 156 GPQGIDGEPGVPGQ----PGAPGPPGHPSHPGPDGLSRPFSA--QMAGLDEKSGLGSQVG 209
Query: 312 MGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKN----SPNNISGISNPPGTPRDDGEL 367
+ PGS GP+G G G G G P + P G PPG P +DGE
Sbjct: 210 LMPGSVGPVGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKPGEDGEP 269
Query: 368 GGN 370
G N
Sbjct: 270 GRN 272
>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
Length = 464
Score = 77.8 bits (190), Expect = 2e-14
Identities = 69/229 (30%), Positives = 92/229 (40%), Gaps = 27/229 (11%)
Query: 98 PSPVLGNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYA 157
P P++ +PP +P PP PPG P P P PS GP P +P
Sbjct: 234 PPPLMNGLPPRPPLPESLPPP-----PPGGLPLPPMPPTGPAPSGPPGPPQLPPPAP--- 285
Query: 158 GGPRPPIRMGNQPPGGV----PGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPR-GMGPM 212
G PP + + P GV PG P P + P HP G ++PP G+ P
Sbjct: 286 -GVHPPAPVVHPPASGVHPPAPGVHPPAPG-VHPPAPGVHPPTSG----VHPPAPGVHPP 339
Query: 213 GPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIP-YSSSSPGTYVGPPG 271
PG G+ PP + P PG++ P AG P + P +PG V PP
Sbjct: 340 APGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAPGVHPAAPAVHPQAPG--VHPPA 397
Query: 272 GGGPPGTP-IMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGP 319
G P P + P P S+ ++ P PPG SN + P + P
Sbjct: 398 PGMHPQAPGVHPQPPGVHPSAPGVH----PQPPGVHPSNPGVHPPTPMP 442
Score = 58.5 bits (140), Expect = 1e-08
Identities = 56/202 (27%), Positives = 76/202 (37%), Gaps = 18/202 (8%)
Query: 134 QPPPHNPSSMMGPHSQPFMSPRYAGG--PRPPI--RMGNQPPGGVPGTQPLLPNSMDPTR 189
+ PP PS GP P G PRPP+ + PPGG+P P+ P P+
Sbjct: 215 EKPPAPPSLPAGPPGVKRPPPPLMNGLPPRPPLPESLPPPPPGGLP-LPPMPPTGPAPSG 273
Query: 190 QQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPN 249
G P Q P G+ P P SG+ PP + P PG++ P A P
Sbjct: 274 PPGPP------QLPPPAPGVHPPAPVVHPPASGVHPPAPGVHPPAPGVH--PPAPGVHPP 325
Query: 250 PNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPG---GS 306
+ + P V PP G P P + PA + + ++P PG +
Sbjct: 326 TSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPS--AGVHPQAPGVHPAA 383
Query: 307 RSNFPMGPGSDGPMGGMGGMEP 328
+ P PG P GM P
Sbjct: 384 PAVHPQAPGVHPPAPGMHPQAP 405
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 77.4 bits (189), Expect = 2e-14
Identities = 88/303 (29%), Positives = 109/303 (35%), Gaps = 54/303 (17%)
Query: 110 GMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQ 169
G+ GP+ P +GPPG +P Q NP P M PR G P PP + G+
Sbjct: 197 GVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPR--GPPGPPGKPGDD 254
Query: 170 -------------PPG-----GVPGTQPLLPN--------SMDPTR-QQGHPNMGGSMQR 202
PPG G PGT P LP +D + + G P + G
Sbjct: 255 GEAGKPGKAGERGPPGPQGARGFPGT-PGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGS 313
Query: 203 MNPPRGMGPMGP----------GPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNS 252
GPMGP GP +G R GPA P +GP G +P
Sbjct: 314 PGENGSPGPMGPRGLPGERGRTGPAG-AAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPG 372
Query: 253 ANSIPYSSSSPGTYVGPPGGGGP---PGTPIMPSPADSTNS--SDNIYTMINP--VPPGG 305
A + P GP G GP PGTP P PA ++ + +D I P
Sbjct: 373 AK----GEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIA 428
Query: 306 SRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDG 365
FP G GP G G + P G G G + P G + P G P G
Sbjct: 429 GAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKG--EQGPKGEPGPAGPQGAPGPAG 486
Query: 366 ELG 368
E G
Sbjct: 487 EEG 489
Score = 75.1 bits (183), Expect = 1e-13
Identities = 84/303 (27%), Positives = 98/303 (32%), Gaps = 56/303 (18%)
Query: 98 PSPVLGNIPPNDGMPGGPIPPGF--FQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPR 155
P+ GN P DG+PG G G PG P P P P + +GP Q
Sbjct: 403 PAGASGN-PGTDGIPGAKGSAGAPGIAGAPGF-PGPRGPPGPQGATGPLGPKGQ------ 454
Query: 156 YAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNP---PRGMGPM 212
G P G Q P G PG P QG P G + P G+GP+
Sbjct: 455 -TGEPGIAGFKGEQGPKGEPG----------PAGPQGAPGPAGEEGKRGARGEPGGVGPI 503
Query: 213 GPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGT-----YV 267
GP + G R P G A P G P AN P PG
Sbjct: 504 GPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLT 563
Query: 268 GPPGGGGP---------PGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMG----- 313
G PG GP PG P P + M P P G + G
Sbjct: 564 GRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLP 623
Query: 314 --------PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDG 365
PG DG G G P G G G P P+ G+ PPG P + G
Sbjct: 624 GAPGLRGLPGKDGETGAAG---PPGPAGPAGERGEQGAP--GPSGFQGLPGPPGPPGEGG 678
Query: 366 ELG 368
+ G
Sbjct: 679 KPG 681
Score = 73.2 bits (178), Expect = 4e-13
Identities = 86/286 (30%), Positives = 97/286 (33%), Gaps = 43/286 (15%)
Query: 106 PPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIR 165
P N G PG P PP GPPG + AQ G P GPR P
Sbjct: 158 PGNPGPPGPPGPP----GPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGP-- 211
Query: 166 MGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG-PGPQNYG---- 220
P G PG Q N +P G P + G M PP GP G PG
Sbjct: 212 ---PGPAGAPGPQGFQGNPGEP----GEPGVSGPMGPRGPP---GPPGKPGDDGEAGKPG 261
Query: 221 -SGMRPPPNSLG----PAMPGINMGPGAGRPWPNPNSAN------SIPYSSSSPGTYVGP 269
+G R PP G P PG+ G R +P + A + S SPG G
Sbjct: 262 KAGERGPPGPQGARGFPGTPGL-PGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGEN-GS 319
Query: 270 PGGGGPPGTP-----IMPSPADSTNSSDNIYTMINPVPPGGSRS--NFPMGPGSDGPMGG 322
PG GP G P P+ A +D P P G FP PG+ G G
Sbjct: 320 PGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGP 379
Query: 323 MGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
G P G G G P P SG G P G G
Sbjct: 380 TGARGPEGAQGPRGEPGTPGSP--GPAGASGNPGTDGIPGAKGSAG 423
Score = 73.2 bits (178), Expect = 4e-13
Identities = 85/307 (27%), Positives = 98/307 (31%), Gaps = 61/307 (19%)
Query: 106 PPNDGMPGGPIPPGFF-----------QGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSP 154
P ++G PG P PPG GPPG P Q P P P P
Sbjct: 908 PGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDD---GP 964
Query: 155 RYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGP 214
A GP P + Q G+ G LP G P G + P G GP
Sbjct: 965 SGAEGPPGPQGLAGQR--GIVG----LPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGP 1018
Query: 215 GPQNYGSGMRPPPNSLGPA-MPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGG 273
G PP GPA PG PGA P P + A + G VG PG
Sbjct: 1019 ------PGPVGPPGLTGPAGEPGREGSPGADGP-PGRDGAAGVKGDRGETGA-VGAPGAP 1070
Query: 274 GPPGTPIMPSPADSTNSSDNIYTM--INPVPPGGSRS-NFPMGPGSD------------- 317
GPPG+P P + P P G+R P GP D
Sbjct: 1071 GPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLK 1130
Query: 318 ---------------GPMGGMGGMEPHHMNGSLGS-GDIDGLPKNSPNNISGISNPPGTP 361
GP G G P +G G G + K+ N I G PPG
Sbjct: 1131 GHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPR 1190
Query: 362 RDDGELG 368
GE G
Sbjct: 1191 GRSGETG 1197
Score = 68.9 bits (167), Expect = 7e-12
Identities = 85/311 (27%), Positives = 96/311 (30%), Gaps = 60/311 (19%)
Query: 102 LGNIPPNDGMPG--GPIPPGFFQGPPGSQ-----------------------PSPHAQPP 136
L P DG G GP P QGPPG Q P P
Sbjct: 721 LPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG 780
Query: 137 PHNPSSMMGPHSQPFMSPRYAGGPR----PPIRMGNQPPGGVPG----TQPLLPNSM-DP 187
+ GP P P A G + PP G+ G PG T P P P
Sbjct: 781 KDGGRGLTGPIGPP--GPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGP 838
Query: 188 TRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPW 247
G P G G PGPQ P + GP P GP R
Sbjct: 839 PGADGQPGAKGEQGEAGQKGDAG--APGPQG-------PSGAPGPQGPTGVTGPKGARGA 889
Query: 248 PNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSR 307
P A P ++ VGPPG G PG P P P+ P G
Sbjct: 890 QGPPGATGFPGAAGR----VGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPG 945
Query: 308 SNFPMG-------PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP-KNSPNNISGISNPPG 359
P G PG DGP G G P + G G I GLP + G+ P G
Sbjct: 946 LQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRG---IVGLPGQRGERGFPGLPGPSG 1002
Query: 360 TPRDDGELGGN 370
P G G +
Sbjct: 1003 EPGKQGAPGAS 1013
Score = 68.9 bits (167), Expect = 7e-12
Identities = 88/315 (27%), Positives = 104/315 (33%), Gaps = 67/315 (21%)
Query: 110 GMPG-----GPIPPGFFQGPPGSQPSPHAQ--------------PPPHNPSSMMGPHSQP 150
G PG GP P F GPPG+ P A+ P P PS GP
Sbjct: 819 GAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPT 878
Query: 151 FMS-----------------PRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGH 193
++ P AG PP GN P G PG P+ D + G
Sbjct: 879 GVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPG-----PSGKDGPK--GA 931
Query: 194 PNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMP-------GINMGPG--AG 244
G R P GP GP + G P + GP P GI PG
Sbjct: 932 RGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGE 991
Query: 245 RPWPNPNSANSIPYSSSSPGTY--------VGPPGGGGPPGTPIMP-SP-ADSTNSSDNI 294
R +P + P +PG VGPPG GP G P SP AD D
Sbjct: 992 RGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGA 1051
Query: 295 YTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDG-LPKNSPNNISG 353
+ G+ PG+ GP G G P G G G + + P G
Sbjct: 1052 AGVKGDRGETGAVG----APGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARG 1107
Query: 354 ISNPPGTPRDDGELG 368
I P G D GE G
Sbjct: 1108 IQGPQGPRGDKGEAG 1122
Score = 67.0 bits (162), Expect = 3e-11
Identities = 84/309 (27%), Positives = 106/309 (34%), Gaps = 79/309 (25%)
Query: 110 GMPGG--PIPPGFFQGPPGSQ--------PSPHAQPPPHNPSSMMGPHSQPFMSPRYAGG 159
G PGG PI P +G PG++ P P PS + GP G
Sbjct: 495 GEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPK----------GA 544
Query: 160 PRPPIRMGNQPPGGVPGTQPLL--PNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG---- 213
P R G G+PG + L P P + G G R PP G G
Sbjct: 545 NGDPGRPGEP---GLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGV 601
Query: 214 ---PGPQNYGSGMRPPPNSLG----PAMPGINMGPG-------AGRPWPNPNSANSIPYS 259
PGP+ G P G P PG+ PG AG P P +
Sbjct: 602 MGFPGPK----GANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG 657
Query: 260 SSSPGTYVG------PPGGGGPPGTPIMPSPADSTNSSDNIYTMINP----------VPP 303
+ P + G PPG GG PG +P A + ++ P P
Sbjct: 658 APGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPG-------LVGPRGERGFPGERGSP 710
Query: 304 GGSRSNFPMG----PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPG 359
G P G PG+DGP G G P G+ G + G+P +GI+ P G
Sbjct: 711 GAQGLQGPRGLPGTPGTDGPKGASGPAGP---PGAQGPPGLQGMP--GERGAAGIAGPKG 765
Query: 360 TPRDDGELG 368
D GE G
Sbjct: 766 DRGDVGEKG 774
Score = 66.2 bits (160), Expect = 5e-11
Identities = 79/285 (27%), Positives = 98/285 (34%), Gaps = 67/285 (23%)
Query: 106 PPNDGMPGGPIPPGF--------------FQGPPGSQPSPHAQPPPHNPSSMMGPH---- 147
P +G PG PPG G PG+ P P P P P+ G
Sbjct: 1034 PGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGA-PGPPGSPGPAGPTGKQGDRGEAG 1092
Query: 148 SQPFMSPRYAGGPR----PPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRM 203
+Q M P G R P G++ G PG + L +GH G
Sbjct: 1093 AQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGL----------KGHRGFTGLQGLP 1142
Query: 204 NPPRGMGPMGPGPQNYGSGMRPPPNSLGPA-MPGINMGPGA-GRPWPNPNSANSIPYSSS 261
PP G G SG R PP +GP+ G N PG G P P S + P
Sbjct: 1143 GPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGP---- 1198
Query: 262 SPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFP-MGPGSDGPM 320
GPPG GPPG P P PG S F +GP GP
Sbjct: 1199 -----AGPPGNPGPPGPP-------------------GPPGPGIDMSAFAGLGPREKGP- 1233
Query: 321 GGMGGMEPHHMNGSLGSGD--IDGLPKNSPNNISGISNPPGTPRD 363
+ M G L D +D K+ N I I +P G+ ++
Sbjct: 1234 DPLQYMRADQAAGGLRQHDAEVDATLKSLNNQIESIRSPEGSRKN 1278
Score = 56.2 bits (134), Expect = 5e-08
Identities = 74/257 (28%), Positives = 88/257 (34%), Gaps = 35/257 (13%)
Query: 128 QPSPHAQP-PPHNPSSMMGPHSQPF-MSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSM 185
QP P Q P + ++GP P P GPR G++ G PG
Sbjct: 99 QPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGD--RGDKGEKGAPG--------- 147
Query: 186 DPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPP-PNSLGPAMPGINMGP--- 241
P + G P G+ PP GP G G N+ + M G A G+ GP
Sbjct: 148 -PRGRDGEPGTPGNPGPPGPPGPPGPPGLG-GNFAAQMAGGFDEKAGGAQLGVMQGPMGP 205
Query: 242 --------GAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDN 293
AG P P N P PG GP G GPPG P P D
Sbjct: 206 MGPRGPPGPAGAPGPQGFQGN--PGEPGEPGV-SGPMGPRGPPGPPGKPGD-DGEAGKPG 261
Query: 294 IYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSP--NNI 351
P P G+R FP PG G G G G G+ + G SP N
Sbjct: 262 KAGERGPPGPQGAR-GFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKG-ESGSPGENGS 319
Query: 352 SGISNPPGTPRDDGELG 368
G P G P + G G
Sbjct: 320 PGPMGPRGLPGERGRTG 336
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 77.4 bits (189), Expect = 2e-14
Identities = 88/303 (29%), Positives = 109/303 (35%), Gaps = 54/303 (17%)
Query: 110 GMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQ 169
G+ GP+ P +GPPG +P Q NP P M PR G P PP + G+
Sbjct: 128 GVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPR--GPPGPPGKPGDD 185
Query: 170 -------------PPG-----GVPGTQPLLPN--------SMDPTR-QQGHPNMGGSMQR 202
PPG G PGT P LP +D + + G P + G
Sbjct: 186 GEAGKPGKAGERGPPGPQGARGFPGT-PGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGS 244
Query: 203 MNPPRGMGPMGP----------GPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNS 252
GPMGP GP +G R GPA P +GP G +P
Sbjct: 245 PGENGSPGPMGPRGLPGERGRTGPAG-AAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPG 303
Query: 253 ANSIPYSSSSPGTYVGPPGGGGP---PGTPIMPSPADSTNS--SDNIYTMINP--VPPGG 305
A + P GP G GP PGTP P PA ++ + +D I P
Sbjct: 304 AK----GEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIA 359
Query: 306 SRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDG 365
FP G GP G G + P G G G + P G + P G P G
Sbjct: 360 GAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKG--EQGPKGEPGPAGPQGAPGPAG 417
Query: 366 ELG 368
E G
Sbjct: 418 EEG 420
Score = 75.1 bits (183), Expect = 1e-13
Identities = 84/303 (27%), Positives = 98/303 (32%), Gaps = 56/303 (18%)
Query: 98 PSPVLGNIPPNDGMPGGPIPPGF--FQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPR 155
P+ GN P DG+PG G G PG P P P P + +GP Q
Sbjct: 334 PAGASGN-PGTDGIPGAKGSAGAPGIAGAPGF-PGPRGPPGPQGATGPLGPKGQ------ 385
Query: 156 YAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNP---PRGMGPM 212
G P G Q P G PG P QG P G + P G+GP+
Sbjct: 386 -TGEPGIAGFKGEQGPKGEPG----------PAGPQGAPGPAGEEGKRGARGEPGGVGPI 434
Query: 213 GPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGT-----YV 267
GP + G R P G A P G P AN P PG
Sbjct: 435 GPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLT 494
Query: 268 GPPGGGGP---------PGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMG----- 313
G PG GP PG P P + M P P G + G
Sbjct: 495 GRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLP 554
Query: 314 --------PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDG 365
PG DG G G P G G G P P+ G+ PPG P + G
Sbjct: 555 GAPGLRGLPGKDGETGAAG---PPGPAGPAGERGEQGAP--GPSGFQGLPGPPGPPGEGG 609
Query: 366 ELG 368
+ G
Sbjct: 610 KPG 612
Score = 73.2 bits (178), Expect = 4e-13
Identities = 86/286 (30%), Positives = 97/286 (33%), Gaps = 43/286 (15%)
Query: 106 PPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIR 165
P N G PG P PP GPPG + AQ G P GPR P
Sbjct: 89 PGNPGPPGPPGPP----GPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGP-- 142
Query: 166 MGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG-PGPQNYG---- 220
P G PG Q N +P G P + G M PP GP G PG
Sbjct: 143 ---PGPAGAPGPQGFQGNPGEP----GEPGVSGPMGPRGPP---GPPGKPGDDGEAGKPG 192
Query: 221 -SGMRPPPNSLG----PAMPGINMGPGAGRPWPNPNSAN------SIPYSSSSPGTYVGP 269
+G R PP G P PG+ G R +P + A + S SPG G
Sbjct: 193 KAGERGPPGPQGARGFPGTPGL-PGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGEN-GS 250
Query: 270 PGGGGPPGTP-----IMPSPADSTNSSDNIYTMINPVPPGGSRS--NFPMGPGSDGPMGG 322
PG GP G P P+ A +D P P G FP PG+ G G
Sbjct: 251 PGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGP 310
Query: 323 MGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
G P G G G P P SG G P G G
Sbjct: 311 TGARGPEGAQGPRGEPGTPGSP--GPAGASGNPGTDGIPGAKGSAG 354
Score = 73.2 bits (178), Expect = 4e-13
Identities = 85/307 (27%), Positives = 98/307 (31%), Gaps = 61/307 (19%)
Query: 106 PPNDGMPGGPIPPGFF-----------QGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSP 154
P ++G PG P PPG GPPG P Q P P P P
Sbjct: 839 PGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDD---GP 895
Query: 155 RYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGP 214
A GP P + Q G+ G LP G P G + P G GP
Sbjct: 896 SGAEGPPGPQGLAGQR--GIVG----LPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGP 949
Query: 215 GPQNYGSGMRPPPNSLGPA-MPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGG 273
G PP GPA PG PGA P P + A + G VG PG
Sbjct: 950 ------PGPVGPPGLTGPAGEPGREGSPGADGP-PGRDGAAGVKGDRGETGA-VGAPGAP 1001
Query: 274 GPPGTPIMPSPADSTNSSDNIYTM--INPVPPGGSRS-NFPMGPGSD------------- 317
GPPG+P P + P P G+R P GP D
Sbjct: 1002 GPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLK 1061
Query: 318 ---------------GPMGGMGGMEPHHMNGSLGS-GDIDGLPKNSPNNISGISNPPGTP 361
GP G G P +G G G + K+ N I G PPG
Sbjct: 1062 GHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPR 1121
Query: 362 RDDGELG 368
GE G
Sbjct: 1122 GRSGETG 1128
Score = 68.9 bits (167), Expect = 7e-12
Identities = 85/311 (27%), Positives = 96/311 (30%), Gaps = 60/311 (19%)
Query: 102 LGNIPPNDGMPG--GPIPPGFFQGPPGSQ-----------------------PSPHAQPP 136
L P DG G GP P QGPPG Q P P
Sbjct: 652 LPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG 711
Query: 137 PHNPSSMMGPHSQPFMSPRYAGGPR----PPIRMGNQPPGGVPG----TQPLLPNSM-DP 187
+ GP P P A G + PP G+ G PG T P P P
Sbjct: 712 KDGGRGLTGPIGPP--GPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGP 769
Query: 188 TRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPW 247
G P G G PGPQ P + GP P GP R
Sbjct: 770 PGADGQPGAKGEQGEAGQKGDAG--APGPQG-------PSGAPGPQGPTGVTGPKGARGA 820
Query: 248 PNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSR 307
P A P ++ VGPPG G PG P P P+ P G
Sbjct: 821 QGPPGATGFPGAAGR----VGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPG 876
Query: 308 SNFPMG-------PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP-KNSPNNISGISNPPG 359
P G PG DGP G G P + G G I GLP + G+ P G
Sbjct: 877 LQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRG---IVGLPGQRGERGFPGLPGPSG 933
Query: 360 TPRDDGELGGN 370
P G G +
Sbjct: 934 EPGKQGAPGAS 944
Score = 68.9 bits (167), Expect = 7e-12
Identities = 88/315 (27%), Positives = 104/315 (33%), Gaps = 67/315 (21%)
Query: 110 GMPG-----GPIPPGFFQGPPGSQPSPHAQ--------------PPPHNPSSMMGPHSQP 150
G PG GP P F GPPG+ P A+ P P PS GP
Sbjct: 750 GAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPT 809
Query: 151 FMS-----------------PRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGH 193
++ P AG PP GN P G PG P+ D + G
Sbjct: 810 GVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPG-----PSGKDGPK--GA 862
Query: 194 PNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMP-------GINMGPG--AG 244
G R P GP GP + G P + GP P GI PG
Sbjct: 863 RGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGE 922
Query: 245 RPWPNPNSANSIPYSSSSPGTY--------VGPPGGGGPPGTPIMP-SP-ADSTNSSDNI 294
R +P + P +PG VGPPG GP G P SP AD D
Sbjct: 923 RGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGA 982
Query: 295 YTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDG-LPKNSPNNISG 353
+ G+ PG+ GP G G P G G G + + P G
Sbjct: 983 AGVKGDRGETGAVG----APGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARG 1038
Query: 354 ISNPPGTPRDDGELG 368
I P G D GE G
Sbjct: 1039 IQGPQGPRGDKGEAG 1053
Score = 67.0 bits (162), Expect = 3e-11
Identities = 84/309 (27%), Positives = 106/309 (34%), Gaps = 79/309 (25%)
Query: 110 GMPGG--PIPPGFFQGPPGSQ--------PSPHAQPPPHNPSSMMGPHSQPFMSPRYAGG 159
G PGG PI P +G PG++ P P PS + GP G
Sbjct: 426 GEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPK----------GA 475
Query: 160 PRPPIRMGNQPPGGVPGTQPLL--PNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG---- 213
P R G G+PG + L P P + G G R PP G G
Sbjct: 476 NGDPGRPGEP---GLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGV 532
Query: 214 ---PGPQNYGSGMRPPPNSLG----PAMPGINMGPG-------AGRPWPNPNSANSIPYS 259
PGP+ G P G P PG+ PG AG P P +
Sbjct: 533 MGFPGPK----GANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG 588
Query: 260 SSSPGTYVG------PPGGGGPPGTPIMPSPADSTNSSDNIYTMINP----------VPP 303
+ P + G PPG GG PG +P A + ++ P P
Sbjct: 589 APGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPG-------LVGPRGERGFPGERGSP 641
Query: 304 GGSRSNFPMG----PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPG 359
G P G PG+DGP G G P G+ G + G+P +GI+ P G
Sbjct: 642 GAQGLQGPRGLPGTPGTDGPKGASGPAGP---PGAQGPPGLQGMP--GERGAAGIAGPKG 696
Query: 360 TPRDDGELG 368
D GE G
Sbjct: 697 DRGDVGEKG 705
Score = 66.2 bits (160), Expect = 5e-11
Identities = 79/285 (27%), Positives = 98/285 (34%), Gaps = 67/285 (23%)
Query: 106 PPNDGMPGGPIPPGF--------------FQGPPGSQPSPHAQPPPHNPSSMMGPH---- 147
P +G PG PPG G PG+ P P P P P+ G
Sbjct: 965 PGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGA-PGPPGSPGPAGPTGKQGDRGEAG 1023
Query: 148 SQPFMSPRYAGGPR----PPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRM 203
+Q M P G R P G++ G PG + L +GH G
Sbjct: 1024 AQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGL----------KGHRGFTGLQGLP 1073
Query: 204 NPPRGMGPMGPGPQNYGSGMRPPPNSLGPA-MPGINMGPGA-GRPWPNPNSANSIPYSSS 261
PP G G SG R PP +GP+ G N PG G P P S + P
Sbjct: 1074 GPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGP---- 1129
Query: 262 SPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFP-MGPGSDGPM 320
GPPG GPPG P P PG S F +GP GP
Sbjct: 1130 -----AGPPGNPGPPGPP-------------------GPPGPGIDMSAFAGLGPREKGP- 1164
Query: 321 GGMGGMEPHHMNGSLGSGD--IDGLPKNSPNNISGISNPPGTPRD 363
+ M G L D +D K+ N I I +P G+ ++
Sbjct: 1165 DPLQYMRADQAAGGLRQHDAEVDATLKSLNNQIESIRSPEGSRKN 1209
Score = 58.2 bits (139), Expect = 1e-08
Identities = 76/263 (28%), Positives = 90/263 (34%), Gaps = 35/263 (13%)
Query: 122 QGPPGSQPSPHAQP-PPHNPSSMMGPHSQPF-MSPRYAGGPRPPIRMGNQPPGGVPGTQP 179
QG QP P Q P + ++GP P P GPR G++ G PG
Sbjct: 24 QGQDVRQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGD--RGDKGEKGAPG--- 78
Query: 180 LLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPP-PNSLGPAMPGIN 238
P + G P G+ PP GP G G N+ + M G A G+
Sbjct: 79 -------PRGRDGEPGTPGNPGPPGPPGPPGPPGLG-GNFAAQMAGGFDEKAGGAQLGVM 130
Query: 239 MGP-----------GAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADS 287
GP AG P P N P PG GP G GPPG P P D
Sbjct: 131 QGPMGPMGPRGPPGPAGAPGPQGFQGN--PGEPGEPGV-SGPMGPRGPPGPPGKPGD-DG 186
Query: 288 TNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNS 347
P P G+R FP PG G G G G G+ + G S
Sbjct: 187 EAGKPGKAGERGPPGPQGAR-GFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKG-ESGS 244
Query: 348 P--NNISGISNPPGTPRDDGELG 368
P N G P G P + G G
Sbjct: 245 PGENGSPGPMGPRGLPGERGRTG 267
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 76.3 bits (186), Expect = 5e-14
Identities = 85/287 (29%), Positives = 101/287 (35%), Gaps = 43/287 (14%)
Query: 110 GMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQ 169
G PG P PG QG PG + P P G H +P AG P P +G
Sbjct: 356 GDPGLPGEPGL-QGRPG-ELGPQGPTGPPGAKGQEGAHG----APGAAGNPGAPGHVGAP 409
Query: 170 PPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG-------PGPQNYGS- 221
P G PG+ P + G G+ P +GP G PGP G
Sbjct: 410 GPSGPPGSVGA-PGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKGKD 468
Query: 222 ---GMRPPPNSLGP-------AMPGINMGPG---------AGRPWPN-PNSANSIPYSSS 261
G+R P GP PGI PG AG P P+ P P S
Sbjct: 469 GEPGLRGSPGLPGPLGTKGDRGAPGIPGSPGSRGDPGIGVAGPPGPSGPPGDKGSPGSRG 528
Query: 262 SPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMG 321
PG + GP G G G + SP D + ++ P PPG P PG G G
Sbjct: 529 LPG-FPGPQGPAGRDGLSSLLSPGDINLLAKDVCNDCPPGPPG-----LPGLPGFKGDKG 582
Query: 322 GMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
G G G GLP P I+G G DGE+G
Sbjct: 583 VPGKPGREGTEGKKGEAGPPGLP--GPPGIAGPQGSQGERGADGEVG 627
Score = 73.6 bits (179), Expect = 3e-13
Identities = 85/277 (30%), Positives = 103/277 (37%), Gaps = 32/277 (11%)
Query: 105 IPPNDGMPGGPIPPGF-----FQGPPGSQPSP--HAQPPPHNPSSMMGPHSQPFMSPRYA 157
+P G PG P PPG GPPG Q SP P P PS + G + R
Sbjct: 637 VPGFMGPPGNPGPPGADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGR-D 695
Query: 158 GGPRPPIRMGNQPPGGVPGTQPLL--PNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPG 215
G P PP G G+PG + P T G P G M P G G
Sbjct: 696 GKPGPPGEPGKAGEPGLPGPEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKD 755
Query: 216 PQNYGSGMRPPPNSLGPAMPGINMGPGA-GRPWPN--PNSANSIPYSSSSPGT--YVGPP 270
+G + P GP PG N PG+ G P P+ P S + SPG ++GP
Sbjct: 756 GDTGPTGPQGPQGPRGP--PGKNGSPGSPGEPGPSGTPGQKGS-KGENGSPGLPGFLGPR 812
Query: 271 GGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPG--GSRSNFPMGPGSDGPMGGMGGMEP 328
G G PG +P P PG G R + P G GP GG G
Sbjct: 813 GPPGEPGEKGVPGKEGVPG---------KPGEPGFKGERGD-PGIKGDKGPPGGKGQPGD 862
Query: 329 HHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDG 365
+ G G + G P+ P +G PPG P G
Sbjct: 863 PGIPGHKGHTGLMG-PQGLPGE-NGPVGPPGPPGQPG 897
Score = 68.2 bits (165), Expect = 1e-11
Identities = 88/323 (27%), Positives = 117/323 (36%), Gaps = 45/323 (13%)
Query: 99 SPVLGNIPPNDGMPGGPI--PPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRY 156
+P + P + G PG + PPG GPPG + SP ++ P P GP + +S
Sbjct: 491 APGIPGSPGSRGDPGIGVAGPPGP-SGPPGDKGSPGSRGLPGFPGPQ-GPAGRDGLSSLL 548
Query: 157 AGGPRPPIRMG--NQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMN---PPRGMGP 211
+ G + N P G PG P LP G P G+ + PP GP
Sbjct: 549 SPGDINLLAKDVCNDCPPGPPGL-PGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPGP 607
Query: 212 MG-PGPQNYGSGMRPPPNSLG-------PAMPGINMGPGAGRPWPNPNSANSIPYSSSSP 263
G GPQ G R +G P +PG MGP P P A+ I ++ P
Sbjct: 608 PGIAGPQG-SQGERGADGEVGQKGDQGHPGVPGF-MGPPGN---PGPPGADGIAGAAGPP 662
Query: 264 GTY-----VGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMG----P 314
G GPPG GP G P +P P G P G P
Sbjct: 663 GIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPEGARGPP 722
Query: 315 GSDGPMGGMGGMEPHHMNGSLGSGDIDGLP-------------KNSPNNISGISNPPGTP 361
G G G G P +G++G +GLP P G + PG+P
Sbjct: 723 GFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSP 782
Query: 362 RDDGELGGNFLHSFQNDNYSPSM 384
+ G G + +N SP +
Sbjct: 783 GEPGPSGTPGQKGSKGENGSPGL 805
Score = 65.9 bits (159), Expect = 6e-11
Identities = 80/296 (27%), Positives = 100/296 (33%), Gaps = 44/296 (14%)
Query: 110 GMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQ 169
G PG P PPG GP GSQ A P FM P G P PP G
Sbjct: 600 GPPGLPGPPGI-AGPQGSQGERGADGEVGQKGDQGHPGVPGFMGP--PGNPGPPGADGIA 656
Query: 170 PPGGVPGTQ--PLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPP 227
G PG Q P P G P + G + GP G + G+ P
Sbjct: 657 GAAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPE 716
Query: 228 NSLGPAMPGINMGPG-AGRPWPNPNS-ANSIPYSSSSPGTYV--------------GPPG 271
+ GP PG G +G P P S A +P PG GPPG
Sbjct: 717 GARGP--PGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGPPG 774
Query: 272 GGGPPGTPIMPSPADS--------TNSSDNIYTMINPVPPGGSRS-----------NFPM 312
G PG+P P P+ + N S + + P P G P
Sbjct: 775 KNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLGPRGPPGEPGEKGVPGKEGVPGKPG 834
Query: 313 GPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
PG G G G G G G+P + + +G+ P G P ++G +G
Sbjct: 835 EPGFKGERGDPGIKGDKGPPGGKGQPGDPGIPGHKGH--TGLMGPQGLPGENGPVG 888
Score = 65.1 bits (157), Expect = 1e-10
Identities = 88/318 (27%), Positives = 109/318 (34%), Gaps = 58/318 (18%)
Query: 106 PPNDGMPGGPIPPGFFQGPPG--SQPSPHAQPPPHNPSSMMGPHSQPFM----------S 153
P G PG P P G +GPPG P P S MG Q +
Sbjct: 704 PGKAGEPGLPGPEGA-RGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTG 762
Query: 154 PRYAGGPR-PPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPM 212
P+ GPR PP + G+ G PG P + G P + G + PP G
Sbjct: 763 PQGPQGPRGPPGKNGSPGSPGEPGPSGT-PGQKGSKGENGSPGLPGFLGPRGPPGEPGEK 821
Query: 213 G-PGPQNYGSGMRPPPNSLGPAMPGI--NMGP--GAGRPW----PNPNSANSIPYSSSSP 263
G PG + P PGI + GP G G+P P + P
Sbjct: 822 GVPGKEGVPGKPGEPGFKGERGDPGIKGDKGPPGGKGQPGDPGIPGHKGHTGLMGPQGLP 881
Query: 264 GTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMIN----------------PVPPGGSR 307
G GP G GPPG P P + S + + +I +PP +
Sbjct: 882 GEN-GPVGPPGPPGQPGFPGLRGESPSMETLRRLIQEELGKQLETRLAYLLAQMPPAYMK 940
Query: 308 SN----FPMG-------PGSDGPMG-----GMGGME-PHHMNGSLGSGDIDGLPKNSPNN 350
S+ P G PG GPMG G GG+E P G G G P
Sbjct: 941 SSQGRPGPPGPPGKDGLPGRAGPMGEPGRPGQGGLEGPSGPIGPKGERGAKGDPGAPGVG 1000
Query: 351 ISGISNPPGTPRDDGELG 368
+ G PPG P GE G
Sbjct: 1001 LRGEMGPPGIPGQPGEPG 1018
Score = 64.3 bits (155), Expect = 2e-10
Identities = 87/335 (25%), Positives = 115/335 (34%), Gaps = 46/335 (13%)
Query: 70 YCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPN----DGMPGGP-----IPPGF 120
+ AA + + ++A+A +A AP N P DG+PG P I
Sbjct: 215 FSAALGTQGPADQRADARASCILAAKTAPGLKQLNGEPGERGEDGLPGKPGLRGEIGEQG 274
Query: 121 FQGPPGSQ-----PSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVP 175
G PG + P P G + + P G G P G+P
Sbjct: 275 LAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKGELGL-PGLKGDRGEKGEAGPAGPPGLP 333
Query: 176 GT------QPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGP-GPQNYGS--GMRPP 226
GT P +P P ++G P + G P +GP GP GP G
Sbjct: 334 GTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHGA 393
Query: 227 PNSLG-PAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGT--YVGPPGGGGPPGTPIMPS 283
P + G P PG PG P P S + P +PG G G G G+P
Sbjct: 394 PGAAGNPGAPGHVGAPGPSGP---PGSVGA-PGLRGTPGKDGERGEKGAAGEEGSPGPVG 449
Query: 284 PADSTNSSDNIYTMINPVPPGGSRSNFPM---GPGSDGPMGGMGGMEPHHMNGSLGSGDI 340
P + P PPG + P PG GP+G G + GS GS
Sbjct: 450 PRGDPGAPGL------PGPPGKGKDGEPGLRGSPGLPGPLGTKGDRGAPGIPGSPGSRGD 503
Query: 341 DGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSF 375
G+ ++G P G P D G G L F
Sbjct: 504 PGI------GVAGPPGPSGPPGDKGSPGSRGLPGF 532
Score = 56.2 bits (134), Expect = 5e-08
Identities = 83/309 (26%), Positives = 106/309 (34%), Gaps = 60/309 (19%)
Query: 105 IPPNDGMPG--------GPIPPGFFQGPPGSQPSPHA--QPPPHNPSSMMGPHSQPFMSP 154
+P +G+PG GP P +GPPG SP + +P P G + SP
Sbjct: 745 LPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENG-SP 803
Query: 155 RYAG--GPRPPIRMGNQPPGGVPGTQ--PLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMG 210
G GPR P G GVPG + P P ++G P + G PP G G
Sbjct: 804 GLPGFLGPRGP--PGEPGEKGVPGKEGVPGKPGEPGFKGERGDPGIKGDK---GPPGGKG 858
Query: 211 PMG----PGPQNYGSGMRPP--PNSLGPAMPGINMG----PGAGRPWPNPNSANSIPYS- 259
G PG + + M P P GP P G PG P+ + +
Sbjct: 859 QPGDPGIPGHKGHTGLMGPQGLPGENGPVGPPGPPGQPGFPGLRGESPSMETLRRLIQEE 918
Query: 260 -------------SSSPGTYV----GPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVP 302
+ P Y+ G PG GPPG +P A M P
Sbjct: 919 LGKQLETRLAYLLAQMPPAYMKSSQGRPGPPGPPGKDGLPGRAGP---------MGEPGR 969
Query: 303 PGGSRSNFPMGP-GSDGPMGGMG--GMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPG 359
PG P GP G G G G G + G +G I G P G+ PG
Sbjct: 970 PGQGGLEGPSGPIGPKGERGAKGDPGAPGVGLRGEMGPPGIPGQPGEPGYAKDGLPGIPG 1029
Query: 360 TPRDDGELG 368
+ G G
Sbjct: 1030 PQGETGPAG 1038
Score = 52.4 bits (124), Expect = 7e-07
Identities = 64/241 (26%), Positives = 81/241 (33%), Gaps = 63/241 (26%)
Query: 105 IPPNDGMPGGPIPPGFF-----------QGPPGS--QPSPHAQPPPHNPSSMMGPHSQPF 151
+P +G+PG P PGF +GPPG QP P + +MGP P
Sbjct: 823 VPGKEGVPGKPGEPGFKGERGDPGIKGDKGPPGGKGQPGDPGIPGHKGHTGLMGPQGLPG 882
Query: 152 MSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQ--------------------- 190
+ G P PP QP G PG + P SM+ R+
Sbjct: 883 ENGP-VGPPGPP----GQP--GFPGLRGESP-SMETLRRLIQEELGKQLETRLAYLLAQM 934
Query: 191 --------QGHPNMGGSMQRMNPPRGMGPMG-PGPQNYGSGMRPPPNSLGP--------- 232
QG P G + P GPMG PG G G+ P +GP
Sbjct: 935 PPAYMKSSQGRPGPPGPPGKDGLPGRAGPMGEPGRPGQG-GLEGPSGPIGPKGERGAKGD 993
Query: 233 -AMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSS 291
PG+ + G P P Y+ GP G GP G P +P P
Sbjct: 994 PGAPGVGLRGEMGPPGI-PGQPGEPGYAKDGLPGIPGPQGETGPAGHPGLPGPPGPPGQC 1052
Query: 292 D 292
D
Sbjct: 1053 D 1053
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 76.3 bits (186), Expect = 5e-14
Identities = 83/281 (29%), Positives = 93/281 (33%), Gaps = 63/281 (22%)
Query: 110 GMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQ 169
G PG P PPGF G GS P P + GP P G P PP G Q
Sbjct: 1159 GFPGPPGPPGF-PGKVGS-PGPPGPQAEKGSEGIRGPSGLP-------GSPGPPGPPGIQ 1209
Query: 170 PPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG----------PGPQNY 219
P G+ G + G P + G PP MGP G PGP+
Sbjct: 1210 GPAGLDGLDG----------KDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKG- 1258
Query: 220 GSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTP 279
G PP S G PG PGA P P GPPG GPPG P
Sbjct: 1259 DCGKPGPPGSTG--RPGAEGEPGAMGPQGRP-----------------GPPGHVGPPGPP 1299
Query: 280 IMPSPA-----------DSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEP 328
P PA +T P PPG P PG+DG G G
Sbjct: 1300 GQPGPAGISAVGLKGDRGATGERGLAGLPGQPGPPG--HPGPPGEPGTDGAAGKEGPPGK 1357
Query: 329 HHMNGSLG-SGDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
G G GD + G + PG P G +G
Sbjct: 1358 QGFYGPPGPKGDPGAAGQKGQAGEKGRAGMPGGPGKSGSMG 1398
Score = 70.9 bits (172), Expect = 2e-12
Identities = 86/321 (26%), Positives = 111/321 (34%), Gaps = 64/321 (19%)
Query: 102 LGNIPPNDGMPG-----GPIPPGFFQGPPGSQ--------PSPHA---QPPPHNPSSMMG 145
L + DG PG GP P GPPG + P P +P P + G
Sbjct: 1214 LDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSTGRPG 1273
Query: 146 PHSQP-FMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTR-QQGHPNMGGSMQRM 203
+P M P+ G P PP +G P G PG + + R G + G +
Sbjct: 1274 AEGEPGAMGPQ--GRPGPPGHVGPPGPPGQPGPAGISAVGLKGDRGATGERGLAGLPGQP 1331
Query: 204 NPPRGMGPMGPGPQNYGSGMRPPPNSLG-PAMPGINMGPGA-------------GRPWPN 249
PP GP G + +G PP G PG PGA G P
Sbjct: 1332 GPPGHPGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMPGGP 1391
Query: 250 PNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMP----SPADSTNSSD-------NIYTMI 298
S + P P G PG GP G+P +P S D N + I M
Sbjct: 1392 GKSGSMGPVGPPGPAGERGHPGAPGPSGSPGLPGVPGSMGDMVNYDEIKRFIRQEIIKMF 1451
Query: 299 NP-VPPGGSRSNFPM----------GPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNS 347
+ + SR FPM PG DG G G + G +G GLP
Sbjct: 1452 DERMAYYTSRMQFPMEMAAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLP--- 1508
Query: 348 PNNISGISNPPGTPRDDGELG 368
G+ PGT + G++G
Sbjct: 1509 -----GVRGLPGTKGEKGDIG 1524
Score = 63.2 bits (152), Expect = 4e-10
Identities = 79/275 (28%), Positives = 92/275 (33%), Gaps = 56/275 (20%)
Query: 110 GMPGGPIPPGF-----FQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPI 164
G PG P PPG +GPPG + SP P P P G P + P G
Sbjct: 1018 GSPGLPGPPGLPGQRGEEGPPGMRGSP-GPPGPIGPPGFPGAVGSPGL-PGLQGERGLTG 1075
Query: 165 RMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG-PGPQNYGSGM 223
G++ G PG QP P + P P + G G G PGP G+
Sbjct: 1076 LTGDKGEPGPPG-QPGYPGATGP------PGLPGIKGERGYTGSAGEKGEPGPPG-SEGL 1127
Query: 224 RPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPS 283
PP GP G P NS + G PG GPPG P P
Sbjct: 1128 PGPPGPAGPR----------GERGPQGNSGEK------GDQGFQGQPGFPGPPGPPGFPG 1171
Query: 284 PADSTNSSDNIYTMINPVPPG-----GSR-----SNFPMGPGSDGPMGGMGGMEPHHMNG 333
S P PPG GS S P PG GP G G ++G
Sbjct: 1172 KVGS------------PGPPGPQAEKGSEGIRGPSGLPGSPGPPGPPGIQGPAGLDGLDG 1219
Query: 334 SLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
G + G P P G+ PPG G G
Sbjct: 1220 KDGKPGLRGDP--GPAGPPGLMGPPGFKGKTGHPG 1252
Score = 62.0 bits (149), Expect = 9e-10
Identities = 77/284 (27%), Positives = 98/284 (34%), Gaps = 21/284 (7%)
Query: 95 AAAPSPVLGNIPPNDGMPGGPIPPGFFQGPPGSQPS---PHAQPPPHNPSS--MMGPHSQ 149
A P P PP G+PG P PG GP G + S P + P P + G
Sbjct: 446 AGEPGPPGLPGPPGIGLPGTPGDPGGPPGPKGDKGSSGIPGKEGPGGKPGKPGVKGEKGD 505
Query: 150 PF-MSPRYAGGPRPPIRMGNQP-PGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPR 207
P + P G + + + +P P G PG DP +G P + G P
Sbjct: 506 PCEVCPTLPEGFQNFVGLPGKPGPKGEPG---------DPVPARGDPGIQGIKGEKGEPC 556
Query: 208 GMGPMGPGPQNYGS--GMRPPPNSLGPAMPGINMGPGA-GRPWPNPNSANSIPYSSSSPG 264
G Q+ S G S G +PG+ G G N + P S P
Sbjct: 557 LSCSSVVGAQHLVSSTGASGDVGSPGFGLPGLPGRAGVPGLKGEKGNFGEAGPAGSPGPP 616
Query: 265 TYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMG 324
VGP G G G P P PA S ++ + P P G P G G G G G
Sbjct: 617 GPVGPAGIKGAKGEPCEPCPALSNLQDGDVRVVALPGPSGEKGEPGPPGFGLPGKQGKAG 676
Query: 325 GMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
G G+ G P + G+S PG G G
Sbjct: 677 ERGLKGQKGDAGNPGDPGTPGTTGR--PGLSGEPGVQGPAGPKG 718
Score = 56.6 bits (135), Expect = 4e-08
Identities = 88/332 (26%), Positives = 104/332 (31%), Gaps = 90/332 (27%)
Query: 98 PSPVLGNIPPND----------GMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPH 147
P P L N+ D G G P PPGF G PG Q + G
Sbjct: 634 PCPALSNLQDGDVRVVALPGPSGEKGEPGPPGF--GLPGKQ----GKAGERGLKGQKGDA 687
Query: 148 SQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQ-PLLPNSMDPTRQQGHPNMGGSMQRM-NP 205
P G P P G G PG Q P P P++ G++ M
Sbjct: 688 GNP-------GDPGTPGTTGRPGLSGEPGVQGPAGPKGEKGDGCTACPSLQGTVTDMAGR 740
Query: 206 PRGMGPMGP-GPQNYGSGMRPPPNSLGPAMPGINMGPGA----GRPWPNPNSANSIPYSS 260
P GP G GP+ G +P P +PG+ PG G P P
Sbjct: 741 PGQPGPKGEQGPEGVGRPGKPGQ----PGLPGVQGPPGLKGVQGEPGP------------ 784
Query: 261 SSPGTYV----GPPGGGGPPGTPIMPSP--------ADSTNSSDNIYTMINPVPPGGSRS 308
PG V G PG G PG +P P S + PV P G+
Sbjct: 785 --PGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGASV 842
Query: 309 NFPMG-------------PGSDGPMGGMGGMEPHHMN----GSLGSGDIDGLP------- 344
+ P G PG GP G G EP + G L + G P
Sbjct: 843 SGPPGRDGQQGQTGLRGTPGEKGPRGEKG--EPGECSCPSQGDLIFSGMPGAPGLWMGSS 900
Query: 345 ----KNSPNNISGISNPPGTPRDDGELGGNFL 372
P I G PPG P G G N L
Sbjct: 901 WQPGPQGPPGIPGPPGPPGVPGLQGVPGNNGL 932
Score = 45.4 bits (106), Expect = 9e-05
Identities = 65/261 (24%), Positives = 78/261 (29%), Gaps = 72/261 (27%)
Query: 102 LGNIPPNDGMPGGPIPPGF--------FQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMS 153
L +P G PG P PPG +GPPG Q + P P G Q
Sbjct: 1324 LAGLPGQPGPPGHPGPPGEPGTDGAAGKEGPPGKQGF-YGPPGPKGDPGAAGQKGQAGEK 1382
Query: 154 PRYAGGPRPPIRMGNQPPGGVPGT--QPLLPNSMDPTRQQGHPNMGGSM----------- 200
R AG P P + G+ P G PG + P + P+ G P + GSM
Sbjct: 1383 GR-AGMPGGPGKSGSMGPVGPPGPAGERGHPGAPGPSGSPGLPGVPGSMGDMVNYDEIKR 1441
Query: 201 ------------------QRMNPPRGMG--PMGPGPQNYGSGMRPPPNSLGPAMPG---- 236
RM P M P PGP P P +PG
Sbjct: 1442 FIRQEIIKMFDERMAYYTSRMQFPMEMAAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGR 1501
Query: 237 ---------------------INMGPGAGRPWPNPNSANSIP----YSSSSPGTYVGPPG 271
I +G P P P ++ P G PG
Sbjct: 1502 EGRQGLPGVRGLPGTKGEKGDIGIGIAGENGLPGPPGPQGPPGYGKMGATGPMGQQGIPG 1561
Query: 272 GGGPPGTPIMPSPADSTNSSD 292
GPPG P A N SD
Sbjct: 1562 IPGPPGPMGQPGKAGHCNPSD 1582
Score = 45.1 bits (105), Expect = 1e-04
Identities = 76/304 (25%), Positives = 102/304 (33%), Gaps = 49/304 (16%)
Query: 91 DYSAAAAPSPVLGNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNP---------- 140
D + APS G G G P PPG +G G++ + + P P
Sbjct: 325 DSNVTLAPSGPKGG----KGERGLPGPPGS-KGEKGARGNDCVRISPDAPLQCAEGPKGE 379
Query: 141 ---SSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMG 197
S +GP P G + G + GG+ G +P + G +
Sbjct: 380 KGESGALGPSGLP-------GSTGEKGQKGEKGDGGIKG----VPGKPGRDGRPGEICVI 428
Query: 198 GSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIP 257
G + P +GP G + G+ PP P PG PG G P P + +S
Sbjct: 429 GPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGIGLPGTPG---DPG-GPPGPKGDKGSSGI 484
Query: 258 YSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPM--GPG 315
PG G PG G G P P + + P P G P PG
Sbjct: 485 PGKEGPGGKPGKPGVKGEKGDPCEVCPTLPEGFQNFVGLPGKPGPKGEPGDPVPARGDPG 544
Query: 316 SDGPMGGMGGMEP----------HHMNGSLG-SGDIDGLPKNSPNNISGISNPPGTPRDD 364
G G G EP H+ S G SGD+ G P + G + PG +
Sbjct: 545 IQGIKGEKG--EPCLSCSSVVGAQHLVSSTGASGDV-GSPGFGLPGLPGRAGVPGLKGEK 601
Query: 365 GELG 368
G G
Sbjct: 602 GNFG 605
Score = 43.9 bits (102), Expect = 2e-04
Identities = 76/283 (26%), Positives = 92/283 (32%), Gaps = 69/283 (24%)
Query: 106 PPNDGMPGGPIPPGF--FQGPPGSQPSPHAQP-----------PPHNPSSMMGPHSQPFM 152
PP G+PG P PPG QG PG+ P QP H S+ G Q
Sbjct: 908 PP--GIPGPPGPPGVPGLQGVPGNNGLP-GQPGLTAELGSLPIEQHLLKSICGDCVQGQR 964
Query: 153 S-PRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGP 211
+ P Y + G + G+PG G N + PR
Sbjct: 965 AHPGYL------VEKGEKGDQGIPGVP-------------GLDNCAQCFLSLERPRAEEA 1005
Query: 212 MGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPG 271
G + P +G PG+ PG P P SPG PPG
Sbjct: 1006 RGDNSEG-------DPGCVGS--PGLPGPPGL----PGQRGEEGPPGMRGSPG----PPG 1048
Query: 272 GGGPPGTP-IMPSPADSTNSSDNIYTMI-----NPVPPGGSRSNFPMGPGSDGPMGGMGG 325
GPPG P + SP + T + P PPG P PG+ GP G G
Sbjct: 1049 PIGPPGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGPPGQ-----PGYPGATGPPGLPGI 1103
Query: 326 MEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELG 368
GS G G P G+ PPG GE G
Sbjct: 1104 KGERGYTGSAGEKGEPG-----PPGSEGLPGPPGPAGPRGERG 1141
Score = 29.6 bits (65), Expect = 4.8
Identities = 41/144 (28%), Positives = 49/144 (34%), Gaps = 29/144 (20%)
Query: 97 APSPVLGNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRY 156
A +P P DG PG P G PGS P Q + G P
Sbjct: 1469 AAAPGRPGPPGKDGAPGRP-------GAPGS-PGLPGQIGREGRQGLPGVRGLPGTK--- 1517
Query: 157 AGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMG-----GSMQRMNPPRGMGP 211
G + I +G G+PG P QG P G G M + P GP
Sbjct: 1518 --GEKGDIGIGIAGENGLPG----------PPGPQGPPGYGKMGATGPMGQQGIPGIPGP 1565
Query: 212 MGPGPQNYGSGMRPPPNSLGPAMP 235
GP Q +G P + G AMP
Sbjct: 1566 PGPMGQPGKAGHCNPSDCFG-AMP 1588
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 75.1 bits (183), Expect = 1e-13
Identities = 82/311 (26%), Positives = 106/311 (34%), Gaps = 55/311 (17%)
Query: 105 IPPNDGMPGGPIPPGF--FQGPPGSQPSP--------------HAQPPPHNPSSMMGPHS 148
IP G+PG PPGF +GPPG Q Q P P+ ++GP
Sbjct: 864 IPGEKGLPGLQGPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQTGPPGPAGVLGPQG 923
Query: 149 Q-----PFMSPRYAGGPRPPIRMGNQ-------------PPG-----------GVPGTQP 179
+ P G P PP G PPG G PG +
Sbjct: 924 KTGEVGPLGERGPPGPPGPPGEQGLPGLEGREGAKGELGPPGPLGKEGPAGLRGFPGPKG 983
Query: 180 LLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINM 239
P PT +G G + P GP+GP G G+ S GP P
Sbjct: 984 -GPGDPGPTGLKGDKGPPGPVGANGSPGERGPLGPAG---GIGLPGQSGSEGPVGPAGKK 1039
Query: 240 GPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMIN 299
G R P P + IP P +GPPG GP G + + +
Sbjct: 1040 GSRGERGPPGPTGKDGIP----GPLGPLGPPGAAGPSGEEGDKGDVGAPGHKGSKGDKGD 1095
Query: 300 PVPPGGSRSNFPMG-PGSDGPMGGMGGMEPHHMNGSLGSGDIDG-LPKNSPNNISGISNP 357
PPG P G PG G G G P + G G + G + P + G+ P
Sbjct: 1096 AGPPGQPGIRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQGLPGP 1155
Query: 358 PGTPRDDGELG 368
PG + G++G
Sbjct: 1156 PGEKGEVGDVG 1166
Score = 73.6 bits (179), Expect = 3e-13
Identities = 86/295 (29%), Positives = 102/295 (34%), Gaps = 55/295 (18%)
Query: 106 PPND-GMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQP-----FMSPRYAGG 159
PP G+ G P P G G PG + A+ P P + GPH P P G
Sbjct: 480 PPGPVGLTGRPGPVGL-PGHPGLKGEEGAEGP-QGPRGLQGPHGPPGRVGKMGRPGADGA 537
Query: 160 PRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGH------PNMGGSMQRMNPPRGMGPMG 213
P G + G G P LP GH P G PP G G
Sbjct: 538 RGLPGDTGPKGDRGFDGL-PGLPGEKGQRGDFGHVGQPGPPGEDGERGAEGPPGPTGQAG 596
Query: 214 -PGPQNYGSGMRPPPNSLG-PAMPGINMGPGA-------GRPWPNPNSANSIPYSSSSPG 264
PGP+ G R P G P + GI+ PGA G P P N P
Sbjct: 597 EPGPRGL-LGPRGSPGPTGRPGVTGIDGAPGAKGNVGPPGEPGPPGQQGNHGSQGLPGPQ 655
Query: 265 TYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMG-PGSDGPMGGM 323
+G PG GPPG NP PG S+ P+G PG +GP G
Sbjct: 656 GLIGTPGEKGPPG---------------------NPGIPGLPGSDGPLGHPGHEGPTGEK 694
Query: 324 GGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQND 378
G P GS G P P + G S G + GE G + F+ D
Sbjct: 695 GAQGPP------GSAGPPGYP--GPRGVKGTSGNRGLQGEKGEKGEDGFPGFKGD 741
Score = 72.8 bits (177), Expect = 5e-13
Identities = 84/314 (26%), Positives = 103/314 (32%), Gaps = 82/314 (26%)
Query: 106 PPNDGMPGGPIPPGFF-----QGPPGSQPSPHAQPPPHNPSSM-----------MGPHSQ 149
P G PG P P G GP G+ P + PP + +GP
Sbjct: 1213 PGPPGAPGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAKGSVGPTGLPGDLGPPGD 1272
Query: 150 PFMS-----------PRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGG 198
P +S P GGP PP G G PG P P+ G G
Sbjct: 1273 PGVSGIDGSPGEKGDPGDVGGPGPP---GASGEPGAPGP----PGKRGPSGHMGREGREG 1325
Query: 199 SMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGP----------AMPGINMGPGAGRPWP 248
P GP GP + G R PP +GP PG+ PG P P
Sbjct: 1326 EKGAKGEP---GPDGPPGRTGPMGARGPPGRVGPEGLRGIPGPVGEPGLLGAPGQMGP-P 1381
Query: 249 NPNSANSIPYSSSSPGT-----------YVGPPGGGGPPGTPIMPSPADSTNSSDNIYTM 297
P + +P G +GPPG G G +P
Sbjct: 1382 GPLGPSGLPGLKGDTGPKGEKGHIGLIGLIGPPGEAGEKGDQGLPGVQG----------- 1430
Query: 298 INPVPPGGSRSNFPMG-PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKN-SPNNISGIS 355
PPG P G PG GP+G +G P + G LG G P + P +G +
Sbjct: 1431 ----PPG------PKGDPGPPGPIGSLGHPGPPGVAGPLGQKGSKGSPGSMGPRGDTGPA 1480
Query: 356 NPPGTPRDDGELGG 369
PPG P EL G
Sbjct: 1481 GPPGPPGAPAELHG 1494
Score = 67.8 bits (164), Expect = 2e-11
Identities = 88/330 (26%), Positives = 103/330 (31%), Gaps = 82/330 (24%)
Query: 110 GMPGGPIPPGF-----FQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYA------- 157
G G P PPG +GPPG P Q P ++GP P + R
Sbjct: 569 GHVGQPGPPGEDGERGAEGPPG----PTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDGA 624
Query: 158 ----------GGPRPPIRMGNQPPGGVPGTQ-----------------PLLPNSMDPTRQ 190
G P PP + GN G+PG Q P LP S P
Sbjct: 625 PGAKGNVGPPGEPGPPGQQGNHGSQGLPGPQGLIGTPGEKGPPGNPGIPGLPGSDGPLGH 684
Query: 191 QGHPNMGGSMQRMNPPRGMGPMG-PGPQNYG--SGMRPPPNSLGP----AMPGINMGPGA 243
GH G PP GP G PGP+ SG R G PG G
Sbjct: 685 PGHEGPTGEKGAQGPPGSAGPPGYPGPRGVKGTSGNRGLQGEKGEKGEDGFPGFKGDVGL 744
Query: 244 -------GRPWPNPNSANSIPYSSSSPGTYVGPPGGGGP---------PGTPIMPSPADS 287
G P P P + GPPG G PG P P P S
Sbjct: 745 KGDQGKPGAPGPRGEDGPEGPKGQAGQAGEEGPPGSAGEKGKLGVPGLPGYPGRPGPKGS 804
Query: 288 TNSSDNIYTMINPVPPGG--SRSNFPMGPGSDGPMGGMGGMEPHHMNGSLG----SGDI- 340
P+ P G +S PG +G G G G+ G GD+
Sbjct: 805 IG-------FPGPLGPIGEKGKSGKTGQPGLEGERGPPGSRGERGQPGATGQPGPKGDVG 857
Query: 341 -DGLPK-NSPNNISGISNPPGTPRDDGELG 368
DG P + G+ PPG P G G
Sbjct: 858 QDGAPGIPGEKGLPGLQGPPGFPGPKGPPG 887
Score = 58.2 bits (139), Expect = 1e-08
Identities = 68/250 (27%), Positives = 87/250 (34%), Gaps = 67/250 (26%)
Query: 98 PSPVLGNIPPN-DGMPGGPIPPGFFQGPPG--------SQPSPHAQPPPHNPSSMMGPHS 148
P V G PP G PG P PPG +GP G + +P P P GP
Sbjct: 1288 PGDVGGPGPPGASGEPGAPGPPGK-RGPSGHMGREGREGEKGAKGEPGPDGPPGRTGP-- 1344
Query: 149 QPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRG 208
G PP R+G + G+PG G P + G+ +M PP
Sbjct: 1345 --------MGARGPPGRVGPEGLRGIPGPV-------------GEPGLLGAPGQMGPPGP 1383
Query: 209 MGPMG-------PGPQNYGS-----GMRPPPNSLGP----AMPGINMGPGA-GRPWPNPN 251
+GP G GP+ G+ PP G +PG+ PG G P P P
Sbjct: 1384 LGPSGLPGLKGDTGPKGEKGHIGLIGLIGPPGEAGEKGDQGLPGVQGPPGPKGDPGP-PG 1442
Query: 252 SANSIPY--------------SSSSPGTYV--GPPGGGGPPGTPIMPSPADSTNSSDNIY 295
S+ + S SPG+ G G GPPG P P+
Sbjct: 1443 PIGSLGHPGPPGVAGPLGQKGSKGSPGSMGPRGDTGPAGPPGPPGAPAELHGLRRRRRFV 1502
Query: 296 TMINPVPPGG 305
+ PV GG
Sbjct: 1503 PVPLPVVEGG 1512
Score = 33.9 bits (76), Expect = 0.26
Identities = 35/129 (27%), Positives = 40/129 (31%), Gaps = 48/129 (37%)
Query: 232 PAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSS 291
P+ + PGAG A P + GPPG GP G P
Sbjct: 361 PSRTQFQIFPGAGE-----KGAKGEPAVIEKGQQFEGPPGAPGPQGVVGPSGP------- 408
Query: 292 DNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNI 351
P PPG FP PG GP G + G+P I
Sbjct: 409 --------PGPPG-----FPGDPGPPGPAG------------------LPGIP-----GI 432
Query: 352 SGISNPPGT 360
GI PPGT
Sbjct: 433 DGIRGPPGT 441
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 74.7 bits (182), Expect = 1e-13
Identities = 83/288 (28%), Positives = 101/288 (35%), Gaps = 23/288 (7%)
Query: 106 PPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRP--P 163
P G PG P PG +G PG P P P P GP +P + GG P P
Sbjct: 1310 PGRAGNPGTPGAPGL-KGSPGL-PGPRGDPGERGPR---GPKGEPGAPGQVIGGEGPGLP 1364
Query: 164 IRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRG-MGPMGPGPQNYGSG 222
R G+ P G PG + L + P G P G +M+ RG GP GPG G
Sbjct: 1365 GRKGDPGPSGPPGPRGPLGDP-GPRGPPGLP--GTAMKGDKGDRGERGPPGPGEGGIAPG 1421
Query: 223 MRPPPNSLGPAMPGINMGPGA--GRPWPNPNSANSIPYSSSSPGTYV--GPPGGGGPPGT 278
P G P +GP G + + A +P SPG GPPG GP G
Sbjct: 1422 EPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGD 1481
Query: 279 PIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSG 338
P P P P GSR PG G G G P G G
Sbjct: 1482 RGFPGPLGEAGEKGER----GPPGPAGSRGL----PGVAGRPGAKGPEGPPGPTGRQGEK 1533
Query: 339 DIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQNDNYSPSMTM 386
G P + ++ P G D G G Q + P + +
Sbjct: 1534 GEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGLVL 1581
Score = 72.8 bits (177), Expect = 5e-13
Identities = 88/300 (29%), Positives = 107/300 (35%), Gaps = 41/300 (13%)
Query: 97 APSPVLGNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRY 156
AP V+G P G+PG PG GPPG + P P P P + G + R
Sbjct: 1351 APGQVIGGEGP--GLPGRKGDPG-PSGPPGPR-GPLGDPGPRGPPGLPGTAMKGDKGDRG 1406
Query: 157 AGGPRPPIRMGNQP-PGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPG 215
GP P G P G+PG P P P G G + P P PG
Sbjct: 1407 ERGPPGPGEGGIAPGEPGLPGL-PGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPG 1465
Query: 216 PQNYGSGMRPPPNSLGP----AMPGI--NMGPGAGRPWPNPNSANSIPYSSSSPGTYVGP 269
Q G R PP ++GP PG G R P P + +P + PG GP
Sbjct: 1466 EQ----GPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGA-KGP 1520
Query: 270 PGGGGP------------PGTPIMPSPADSTNSSDNIYTMINPVPPGGSR----SNFPMG 313
G GP PG P + PA + + + P P G+ P G
Sbjct: 1521 EGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEK--GDVGPAGPRGATGVQGERGPPG 1578
Query: 314 ---PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP--KNSPNNISGISNPPGTPRDDGELG 368
PG GP G G P + G G G P K P G P G DGE+G
Sbjct: 1579 LVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGR-PGPPGPVGPRGRDGEVG 1637
Score = 69.7 bits (169), Expect = 4e-12
Identities = 84/317 (26%), Positives = 105/317 (33%), Gaps = 61/317 (19%)
Query: 91 DYSAAAAPSPVLGNIPPND----GMPGGPIPPGFFQGPPGS----------------QPS 130
D P P G I P + G+PG P P G GPPG QP
Sbjct: 1404 DRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPV-GPPGKKGEKGDSEDGAPGLPGQPG 1462
Query: 131 PHAQPPPHNPSSMMGPHS-QPFMSPRYAGGPR----PPIRMGNQPPGGVPGTQPLL---- 181
+ P P +GP + F P G + PP G++ GV G
Sbjct: 1463 SPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEG 1522
Query: 182 -PNSMDPTRQQGHPNMGGSMQRMNP----PRG----MGPMGPGPQNYGSGMRPPPNSLGP 232
P ++G P G + P P+G +GP GP G R PP + P
Sbjct: 1523 PPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGLVLP 1582
Query: 233 AMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSD 292
PG PG P + + PG GPPG G PG P P P
Sbjct: 1583 GDPGPKGDPGDRGPI-------GLTGRAGPPGDS-GPPGEKGDPGRPGPPGPVGPRGRDG 1634
Query: 293 NIYTMINPVPPG-------GSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPK 345
+ + PPG PG GP+G G G G +G P
Sbjct: 1635 EVGEKGDEGPPGDPGLPGKAGERGLRGAPGVRGPVGEKGD------QGDPGEDGRNGSPG 1688
Query: 346 NS-PNNISGISNPPGTP 361
+S P G PPG P
Sbjct: 1689 SSGPKGDRGEPGPPGPP 1705
Score = 67.8 bits (164), Expect = 2e-11
Identities = 86/321 (26%), Positives = 107/321 (33%), Gaps = 75/321 (23%)
Query: 106 PPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIR 165
PP G+PG P PPG PPG P P S GP P G P
Sbjct: 2077 PP--GLPGTPGPPG----PPG--PKVSVDEPGPGLSGEQGP-------PGLKGAKGEPGS 2121
Query: 166 MGNQPPGG---VPGTQ--------------PLLPNSMDPTRQQGHPNMGGSMQRMNPPRG 208
G+Q P G VPG + P LP +G P + G P G
Sbjct: 2122 NGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGG 2181
Query: 209 MGPMGP----------GPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPY 258
G GP GPQ SG++ P GP G+ GP P P + +
Sbjct: 2182 HGDPGPPGAPGLAGPAGPQG-PSGLKGEPGETGPPGRGLT-GPTGAVGLPGPPGPSGLVG 2239
Query: 259 SSSSPGT-----YVGPP---------------GGGGPPGTPIMPSPADSTNSSDNIYTMI 298
SPG G P G G PG+P +P P
Sbjct: 2240 PQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKG--------- 2290
Query: 299 NPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLP-KNSPNNISGISNP 357
P P G PG+ G G GG+ + G G+ GLP +G +
Sbjct: 2291 EPGPTGAPGQAVVGLPGAKGEKGAPGGL-AGDLVGEPGAKGDRGLPGPRGEKGEAGRAGE 2349
Query: 358 PGTPRDDGELGGNFLHSFQND 378
PG P +DG+ G F+ D
Sbjct: 2350 PGDPGEDGQKGAPGPKGFKGD 2370
Score = 65.5 bits (158), Expect = 8e-11
Identities = 79/293 (26%), Positives = 98/293 (33%), Gaps = 67/293 (22%)
Query: 106 PPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIR 165
P DG G P P G F+G PG +G P G P PP
Sbjct: 2353 PGEDGQKGAPGPKG-FKGDPG-----------------VGVPGSP-------GPPGPPGV 2387
Query: 166 MGNQPPGGVPGTQPLL--PNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGP-GPQNYGSG 222
G+ G+PG ++ P P + G P G PP G GP GP
Sbjct: 2388 KGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGREGIPGPLGPPG---- 2443
Query: 223 MRPPPNSLGP----AMPGINMGPGAGRPWPNPNSAN-SIPYSSSSPGT-----YVGPPGG 272
PP S+GP + G PG G P P I PG GPPG
Sbjct: 2444 ---PPGSVGPPGASGLKGDKGDPGVGLPGPRGERGEPGIRGEDGRPGQEGPRGLTGPPGS 2500
Query: 273 GGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMN 332
G G A + ++ P P G++ + G GP G G P N
Sbjct: 2501 RGERGEKGDVGSAGLKGDKGDSAVILGPPGPRGAKGDM----GERGPRGLDGDKGPRGDN 2556
Query: 333 ------------GSLGSGDIDGL-----PKNSPNNISGISNPPGTPRDDGELG 368
G GS + GL P+ P +GI PG+P DG G
Sbjct: 2557 GDPGDKGSKGEPGDKGSAGLPGLRGLLGPQGQP-GAAGIPGDPGSPGKDGVPG 2608
Score = 62.8 bits (151), Expect = 5e-10
Identities = 86/312 (27%), Positives = 104/312 (33%), Gaps = 56/312 (17%)
Query: 98 PSPVLGNIPPND-GMPG--GPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSP 154
P PV G+ P G PG GP P QGP G + P PP + GP
Sbjct: 2176 PGPVGGHGDPGPPGAPGLAGPAGP---QGPSGLKGEPGETGPPGR--GLTGPTGA----- 2225
Query: 155 RYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSM----QRMNP----- 205
G P PP G P G PG LP + T + G P G+ R +P
Sbjct: 2226 --VGLPGPPGPSGLVGPQGSPG----LPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGS 2279
Query: 206 ---PRGMGPMG-PGPQNY-GSGMRPPPNSLG-PAMPGINMGPGAGRPWPNPNSANSIPYS 259
P +GP G PGP G + P + G PG G G P + P
Sbjct: 2280 PGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRG 2339
Query: 260 SSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMG------ 313
G PG G G P P + +P PPG +G
Sbjct: 2340 EKGEAGRAGEPGDPGEDGQKGAPGP-KGFKGDPGVGVPGSPGPPGPPGVKGDLGLPGLPG 2398
Query: 314 -------PGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGE 366
PG GP G MG P G G +G+P G PPG P G
Sbjct: 2399 APGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGREGIP--------GPLGPPGPPGSVGP 2450
Query: 367 LGGNFLHSFQND 378
G + L + D
Sbjct: 2451 PGASGLKGDKGD 2462
Score = 59.3 bits (142), Expect = 6e-09
Identities = 72/248 (29%), Positives = 87/248 (35%), Gaps = 51/248 (20%)
Query: 110 GMPGGPIPPGF--FQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMG 167
G+PG P G F+GPPG P P P+ G P + R +G P G
Sbjct: 1737 GLPGAPGERGIEGFRGPPG----PQGDPGVRGPAGEKGDRGPPGLDGR-SGLDGKPGAAG 1791
Query: 168 NQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGM-GPMGPGPQNYGSGMRPP 226
P G G + DP R G P + G +G+ GP GP G+
Sbjct: 1792 PSGPNGAAG------KAGDPGRD-GLPGLRGE-------QGLPGPSGP------PGLPGK 1831
Query: 227 PNSLG-PAMPGINMGPGA----GRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIM 281
P G P + G N PG GR +S S P G PG GP G P +
Sbjct: 1832 PGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREGRDGPKGERGAPGILGPQGPPGL 1891
Query: 282 PSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDID 341
P P PPG FP PG GP G G G G +
Sbjct: 1892 PGPVG---------------PPG---QGFPGVPGGTGPKGDRGETGSKGEQGLPGERGLR 1933
Query: 342 GLPKNSPN 349
G P + PN
Sbjct: 1934 GEPGSVPN 1941
Score = 58.9 bits (141), Expect = 7e-09
Identities = 77/276 (27%), Positives = 93/276 (33%), Gaps = 48/276 (17%)
Query: 110 GMPG--GPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMG 167
G PG GP+ QG PG + + P P G +P G P PP R+
Sbjct: 1661 GAPGVRGPVGEKGDQGDPG-EDGRNGSPGSSGPK---GDRGEP-------GPPGPPGRLV 1709
Query: 168 NQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPP 227
+ PG +P P +G P + G+ GP PGPQ G+R P
Sbjct: 1710 DTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRGP--PGPQG-DPGVRGPA 1766
Query: 228 NSLGPAMP-------GINMGPGAGRPWPNPNSA---NSIPYSSSSPGT--YVGPPGGGGP 275
G P G++ PGA P PN A P PG G PG GP
Sbjct: 1767 GEKGDRGPPGLDGRSGLDGKPGAAGP-SGPNGAAGKAGDPGRDGLPGLRGEQGLPGPSGP 1825
Query: 276 PGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSL 335
PG P P + P ++ P PG DG G G G
Sbjct: 1826 PGLPGKPGE--------------DGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREGRD 1871
Query: 336 GSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNF 371
G G P I G PPG P G G F
Sbjct: 1872 GPKGERGAP-----GILGPQGPPGLPGPVGPPGQGF 1902
Score = 46.2 bits (108), Expect = 5e-05
Identities = 51/182 (28%), Positives = 61/182 (33%), Gaps = 30/182 (16%)
Query: 187 PTRQQGHPNMGGSMQRMNPPRGMGPMG----PGPQNYGSGMRPPPNSLGPAMPGINMGPG 242
P Q+G P G ++ PP G G PGPQ PP ++ G PG
Sbjct: 1252 PKGQKGEPGEMGLRGQVGPPGDPGLPGRTGAPGPQG------PPGSATAKGERGF---PG 1302
Query: 243 A-GRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPV 301
A GRP P + +PGT PG G G+P +P P P
Sbjct: 1303 ADGRP--------GSPGRAGNPGT----PGAPGLKGSPGLPGPRGDPGERGPRGPKGEPG 1350
Query: 302 PPG----GSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNP 357
PG G P G GP G G P G G + G G P
Sbjct: 1351 APGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGERGP 1410
Query: 358 PG 359
PG
Sbjct: 1411 PG 1412
Score = 46.2 bits (108), Expect = 5e-05
Identities = 65/233 (27%), Positives = 80/233 (34%), Gaps = 53/233 (22%)
Query: 157 AGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGP 216
+G PP G + P G PG + L + DP QG P + + GP GP
Sbjct: 1984 SGEQGPP---GKEGPIGFPGERGLKGDRGDPG-PQGPPGLALGER--------GPPGP-- 2029
Query: 217 QNYGSGMRPPPNSLG-PAMPGINMGPG-AGRPWPNPNSANSIPYSSSSPGTYVGPPGGGG 274
SG+ P G P +PG G G AGRP GPPG G
Sbjct: 2030 ----SGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRD---GPPGLPG 2082
Query: 275 PPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMG-------PGSDGPMGGMGGME 327
PG P P P S ++ PG S P G PGS+G G G
Sbjct: 2083 TPGPPGPPGPKVS----------VDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRG 2132
Query: 328 PHHMNGSLGSGDIDGLPKN----------SPNNISGISNPPGTPRDDGELGGN 370
+ G G G N P G+ P G P G +GG+
Sbjct: 2133 VPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPP---GPVGGH 2182
Score = 45.8 bits (107), Expect = 7e-05
Identities = 76/291 (26%), Positives = 92/291 (31%), Gaps = 35/291 (12%)
Query: 109 DGMPGGPIPPGFF--QGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPR--PPI 164
DG G PG QGPPG P P P P G + + G + P
Sbjct: 1871 DGPKGERGAPGILGPQGPPGL-PGPVGPPGQGFPGVPGGTGPKGDRGETGSKGEQGLPGE 1929
Query: 165 RMGNQPPGGVPGTQPLLPNS---MDPTRQ--QGHPNMGGSMQRMNPPRGMGPMGPGPQNY 219
R PG VP LL + R+ + GS + P R GP G
Sbjct: 1930 RGLRGEPGSVPNVDRLLETAGIKASALREIVETWDESSGSFLPV-PERRRGPKGD----- 1983
Query: 220 GSGMRPPPNSLGP-AMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGT 278
SG + PP GP PG G R P P + P G G G PG
Sbjct: 1984 -SGEQGPPGKEGPIGFPG-ERGLKGDRGDPGPQGPPGLALGERGPPGPSGLAGEPGKPGI 2041
Query: 279 PIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGP----GSDGPMGGMGGMEPHHMNGS 334
P +P A + PG G G DGP G G P G
Sbjct: 2042 PGLPGRAGGVGEAGR---------PGERGERGEKGERGEQGRDGPPGLPGTPGPPGPPGP 2092
Query: 335 LGSGDIDG---LPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQNDNYSP 382
S D G + P + G PG+ D G G + + D P
Sbjct: 2093 KVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEP 2143
Score = 45.4 bits (106), Expect = 9e-05
Identities = 78/293 (26%), Positives = 103/293 (35%), Gaps = 46/293 (15%)
Query: 109 DGMPGGPIPPGFFQGPPGSQP---------SPHAQPPPHNPSSMMGPHSQPFMSPRYAGG 159
DG PG P G GPPGS+ S + + + ++GP PR A G
Sbjct: 2483 DGRPGQEGPRGL-TGPPGSRGERGEKGDVGSAGLKGDKGDSAVILGPPG-----PRGAKG 2536
Query: 160 PRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQ--QGHPNMGGSMQRMNPPRGMGPMGPGPQ 217
MG + P G+ G + ++ DP + +G P GS P G +GP Q
Sbjct: 2537 D-----MGERGPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGSA---GLPGLRGLLGPQGQ 2588
Query: 218 NYGSGMRPPPNSLGP-AMPGINMGPG-AGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGP 275
+G+ P S G +PGI G G P + G G GP
Sbjct: 2589 PGAAGIPGDPGSPGKDGVPGIRGEKGDVGFMGPRGLKGERGVKGACGLDGEKGDKGEAGP 2648
Query: 276 PGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMG------GMEPH 329
PG P + M P PG +S P G GP G G
Sbjct: 2649 PGRPGLAGHKGE---------MGEPGVPG--QSGAPGKEGLIGPKGDRGFDGQPGPKGDQ 2697
Query: 330 HMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQNDNYSP 382
G G+ I G P S N+ G + PPG P G G L + + P
Sbjct: 2698 GEKGERGTPGIGGFPGPSGND--GSAGPPGPPGSVGPRGPEGLQGQKGERGPP 2748
Score = 38.5 bits (88), Expect = 0.010
Identities = 48/187 (25%), Positives = 57/187 (30%), Gaps = 40/187 (21%)
Query: 100 PVLGNIPPNDGMPGGPIPPGF--------FQGP---------------PGSQPSPHAQPP 136
P IP + G PG PG F GP G + P
Sbjct: 2589 PGAAGIPGDPGSPGKDGVPGIRGEKGDVGFMGPRGLKGERGVKGACGLDGEKGDKGEAGP 2648
Query: 137 PHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGT--QPLLPNSMDPTRQQGHP 194
P P + H P G P + G P G G QP ++G P
Sbjct: 2649 PGRPG--LAGHKGEMGEPGVPGQSGAPGKEGLIGPKGDRGFDGQPGPKGDQGEKGERGTP 2706
Query: 195 NMGG---------SMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPG--- 242
+GG S PP +GP GP G R PP PG+ PG
Sbjct: 2707 GIGGFPGPSGNDGSAGPPGPPGSVGPRGPEGLQGQKGERGPPGERVVGAPGVPGAPGERG 2766
Query: 243 -AGRPWP 248
GRP P
Sbjct: 2767 EQGRPGP 2773
Score = 37.4 bits (85), Expect = 0.023
Identities = 55/232 (23%), Positives = 75/232 (32%), Gaps = 28/232 (12%)
Query: 123 GPPGSQPSPHAQPPPHNPS--SMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPL 180
G GS+ P + P ++GP QP AG P P G+ GVPG +
Sbjct: 2560 GDKGSKGEPGDKGSAGLPGLRGLLGPQGQPGA----AGIPGDP---GSPGKDGVPGIRGE 2612
Query: 181 LPNS--MDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLG-PAMPGI 237
+ M P +G + G+ G GP + G+ +G P +PG
Sbjct: 2613 KGDVGFMGPRGLKGERGVKGACGLDGEKGDKGEAGPPGR---PGLAGHKGEMGEPGVPGQ 2669
Query: 238 NMGPGA-------------GRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSP 284
+ PG G+P P + + G + GP G G G P P
Sbjct: 2670 SGAPGKEGLIGPKGDRGFDGQPGPKGDQGEKGERGTPGIGGFPGPSGNDGSAGPPGPPGS 2729
Query: 285 ADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLG 336
PPG P PG+ G G G P G G
Sbjct: 2730 VGPRGPEGLQGQKGERGPPGERVVGAPGVPGAPGERGEQGRPGPAGPRGEKG 2781
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.136 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,221,076
Number of Sequences: 37866
Number of extensions: 2172421
Number of successful extensions: 22600
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 1518
Number of HSP's that attempted gapping in prelim test: 8559
Number of HSP's gapped (non-prelim): 6313
length of query: 388
length of database: 18,247,518
effective HSP length: 104
effective length of query: 284
effective length of database: 14,309,454
effective search space: 4063884936
effective search space used: 4063884936
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.