Guide to the Human Genome
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Name: PCDHGB4 Sequence: fasta or formatted (803aa) NCBI GI: 14270499
Description:

protocadherin gamma subfamily B, 4 isoform 2 precursor

Referenced in:

Cadherins and Related Proteins

Other entries for this name:
alt prot [923aa] protocadherin gamma subfamily B, 4 isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         64           2
 C cysteine            1.6         13           1
 D aspartate           6.4         51           2
 E glutamate           7.0         56           2
 F phenylalanine       4.1         33           1
 G glycine             5.7         46           3
 H histidine           2.1         17           1
 I isoleucine          4.0         32           1
 K lysine              2.9         23           2
 L leucine            11.5         92           2
 M methionine          1.0          8           1
 N asparagine          4.5         36           2
 P proline             5.7         46           2
 Q glutamine           4.4         35           1
 R arginine            4.5         36           2
 S serine             10.3         83           5
 T threonine           5.2         42           2
 V valine              8.3         67           2
 W tryptophan          0.2          2           1
 Y tyrosine            2.6         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protocadherin gamma subfamily B, 4 isoform 2 precurs... 
PCDHGB4               0.995   protocadherin gamma subfamily B, 4 isoform 1 precurs...
PCDHGB5               0.831   protocadherin gamma subfamily B, 5 isoform 2 precurs...
PCDHGB5               0.830   protocadherin gamma subfamily B, 5 isoform 1 precurs...
PCDHGB1               0.674   protocadherin gamma subfamily B, 1 isoform 2 precurs...
PCDHGB6               0.674   protocadherin gamma subfamily B, 6 isoform 1 precurs...
PCDHGB6               0.674   protocadherin gamma subfamily B, 6 isoform 2 precurs...
PCDHGB1               0.674   protocadherin gamma subfamily B, 1 isoform 1 precurs...
PCDHGB2               0.657   protocadherin gamma subfamily B, 2 isoform 1 precurs...
PCDHGB2               0.657   protocadherin gamma subfamily B, 2 isoform 2 precurs...
PCDHGB3               0.651   protocadherin gamma subfamily B, 3 isoform 2 precurs...
PCDHGB3               0.651   protocadherin gamma subfamily B, 3 isoform 1 precurs...
PCDHGB7               0.646   protocadherin gamma subfamily B, 7 isoform 2 precurs...
PCDHGB7               0.646   protocadherin gamma subfamily B, 7 isoform 1 precurs...
PCDHGA12              0.426   protocadherin gamma subfamily A, 12 isoform 1 precurs...
PCDHGA12              0.426   protocadherin gamma subfamily A, 12 isoform 2 precur...
PCDHGA5               0.419   protocadherin gamma subfamily A, 5 isoform 2 precurs...
PCDHGA5               0.419   protocadherin gamma subfamily A, 5 isoform 1 precurs...
PCDHGA6               0.419   protocadherin gamma subfamily A, 6 isoform 1 precurs...
PCDHGA6               0.419   protocadherin gamma subfamily A, 6 isoform 2 precurs...
PCDHGA9               0.416   protocadherin gamma subfamily A, 9 isoform 1 precurs...
PCDHGA9               0.416   protocadherin gamma subfamily A, 9 isoform 2 precurs...
PCDHGA11              0.415   protocadherin gamma subfamily A, 11 isoform 2 precur...
PCDHGA11              0.415   protocadherin gamma subfamily A, 11 isoform 1 precur...
PCDHGA2               0.412   protocadherin gamma subfamily A, 2 isoform 1 precurs...
PCDHGA2               0.412   protocadherin gamma subfamily A, 2 isoform 2 precurs...
PCDHGA3               0.408   protocadherin gamma subfamily A, 3 isoform 1 precurs...
PCDHGA3               0.408   protocadherin gamma subfamily A, 3 isoform 2 precurs...
PCDHGA10              0.406   protocadherin gamma subfamily A, 10 isoform 1 precur...
PCDHGA10              0.406   protocadherin gamma subfamily A, 10 isoform 2 precur...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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