Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: MPP4 Sequence: fasta or formatted (637aa) NCBI GI: 14780902
Description:

membrane protein, palmitoylated 4

Referenced in:

PDZ Domain

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         35           1
 C cysteine            2.2         14           2
 D aspartate           6.0         38           2
 E glutamate           8.3         53           3
 F phenylalanine       3.1         20           2
 G glycine             4.7         30           2
 H histidine           3.0         19           1
 I isoleucine          5.0         32           2
 K lysine              6.0         38           2
 L leucine             9.7         62           2
 M methionine          3.5         22           1
 N asparagine          2.7         17           1
 P proline             6.0         38           2
 Q glutamine           6.4         41           2
 R arginine            4.9         31           2
 S serine              6.9         44           2
 T threonine           4.1         26           2
 V valine              7.2         46           2
 W tryptophan          1.3          8           2
 Y tyrosine            3.6         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   membrane protein, palmitoylated 4 
MPP7                  0.339   palmitoylated membrane protein 7 
MPP3                  0.303   palmitoylated membrane protein 3 
MPP5                  0.223   membrane protein, palmitoylated 5 
DLG1                  0.113   discs, large homolog 1 isoform 2 
DLG2                  0.113   chapsyn-110 isoform 1 
DLG2                  0.113   chapsyn-110 isoform 2 
DLG1                  0.109   discs, large homolog 1 isoform 1 
CASK                  0.104   calcium/calmodulin-dependent serine protein kinase ...
CASK                  0.103   calcium/calmodulin-dependent serine protein kinase ...
DLG3                  0.101   synapse-associated protein 102 isoform b 
MPP6                  0.101   membrane protein, palmitoylated 6 
MPP2                  0.100   palmitoylated membrane protein 2 
CASK                  0.099   calcium/calmodulin-dependent serine protein kinase ...
MPP1                  0.096   palmitoylated membrane protein 1 
DLG3                  0.082   synapse-associated protein 102 isoform a 
DLG2                  0.076   chapsyn-110 isoform 3 
DLG2                  0.076   chapsyn-110 isoform 4 
DLG4                  0.072   post-synaptic density protein 95 isoform 1 
DLG4                  0.072   post-synaptic density protein 95 isoform 2 
GUK1                  0.066   guanylate kinase 1 isoform b 
GUK1                  0.066   guanylate kinase 1 isoform a 
GUK1                  0.066   guanylate kinase 1 isoform b 
DLG5                  0.034   discs large homolog 5 
LRGUK                 0.032   leucine-rich repeats and guanylate kinase domain con...
LIN7C                 0.027   lin-7 homolog C 
GRIP1                 0.026   glutamate receptor interacting protein 1 
LIN7A                 0.025   lin-7 homolog A 
SCRIB                 0.025   scribble isoform b 
SCRIB                 0.025   scribble isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press