Guide to the Human Genome
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Name: LRRC48 Sequence: fasta or formatted (523aa) NCBI GI: 194272222
Description:

leucine rich repeat containing 48 isoform a

Referenced in:

Leucine-rich Repeat Family

Other entries for this name:
alt mRNA [523aa] leucine rich repeat containing 48 isoform a
alt prot [457aa] leucine rich repeat containing 48 isoform b
alt prot [457aa] leucine rich repeat containing 48 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         22           1
 C cysteine            1.7          9           1
 D aspartate           8.4         44           3
 E glutamate          11.3         59           2
 F phenylalanine       3.4         18           1
 G glycine             3.3         17           1
 H histidine           2.7         14           3
 I isoleucine          8.0         42           2
 K lysine              6.1         32           2
 L leucine            14.1         74           2
 M methionine          3.4         18           2
 N asparagine          6.9         36           2
 P proline             1.5          8           1
 Q glutamine           5.0         26           2
 R arginine            5.2         27           2
 S serine              5.2         27           2
 T threonine           2.7         14           1
 V valine              4.2         22           1
 W tryptophan          0.6          3           1
 Y tyrosine            2.1         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat containing 48 isoform a 
LRRC48                1.000   leucine rich repeat containing 48 isoform a 
LRRC48                0.841   leucine rich repeat containing 48 isoform b 
LRRC48                0.841   leucine rich repeat containing 48 isoform b 
CEP110                0.071   centrosomal protein 110kDa 
PPP1R7                0.066   protein phosphatase 1, regulatory subunit 7 
LRGUK                 0.060   leucine-rich repeats and guanylate kinase domain con...
LRRC50                0.054   leucine rich repeat containing 50 
LRRC49                0.053   leucine rich repeat containing 49 
LRRCC1                0.047   sodium channel associated protein 2 isoform a [Homo...
NISCH                 0.046   nischarin 
CEP97                 0.045   centrosomal protein 97kDa 
LRRC6                 0.044   leucine rich repeat containing 6 
LOC654258             0.042   PREDICTED: similar to leucine rich repeat containin...
LRRC23                0.042   leucine rich repeat containing 23 isoform a 
LRRC23                0.042   leucine rich repeat containing 23 isoform a 
DNAL1                 0.039   axonemal dynein light chain 1 
ANP32B                0.035   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
SNRPA1                0.033   small nuclear ribonucleoprotein polypeptide A' [Homo...
LRRC7                 0.030   leucine rich repeat containing 7 
ANP32A                0.030   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
LRRC46                0.030   leucine rich repeat containing 46 
LRIG3                 0.029   leucine-rich repeats and immunoglobulin-like domains...
LRRIQ1                0.029   leucine-rich repeats and IQ motif containing 1 isof...
LRRIQ1                0.029   leucine-rich repeats and IQ motif containing 1 isof...
LRIG3                 0.029   leucine-rich repeats and immunoglobulin-like domain...
LRRC67                0.029   leucine rich repeat containing 67 
LGR6                  0.029   leucine-rich repeat-containing G protein-coupled rec...
LGR6                  0.029   leucine-rich repeat-containing G protein-coupled rec...
LOC100129335          0.027   PREDICTED: Leucine-rich repeat-containing protein E...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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