Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LRRC48 Sequence: fasta or formatted (457aa) NCBI GI: 194272226
Description:

leucine rich repeat containing 48 isoform b

Referenced in:

Leucine-rich Repeat Family

Other entries for this name:
alt prot [523aa] leucine rich repeat containing 48 isoform a
alt prot [523aa] leucine rich repeat containing 48 isoform a
alt mRNA [457aa] leucine rich repeat containing 48 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         21           1
 C cysteine            1.5          7           1
 D aspartate           7.2         33           3
 E glutamate          11.8         54           2
 F phenylalanine       4.4         20           1
 G glycine             3.7         17           1
 H histidine           2.2         10           3
 I isoleucine          7.0         32           2
 K lysine              6.1         28           2
 L leucine            14.4         66           2
 M methionine          3.5         16           2
 N asparagine          6.8         31           2
 P proline             1.8          8           1
 Q glutamine           5.5         25           2
 R arginine            4.6         21           2
 S serine              5.5         25           2
 T threonine           2.6         12           1
 V valine              3.9         18           1
 W tryptophan          0.4          2           1
 Y tyrosine            2.4         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat containing 48 isoform b 
LRRC48                1.000   leucine rich repeat containing 48 isoform b 
LRRC48                0.968   leucine rich repeat containing 48 isoform a 
LRRC48                0.968   leucine rich repeat containing 48 isoform a 
PPP1R7                0.076   protein phosphatase 1, regulatory subunit 7 
CEP110                0.076   centrosomal protein 110kDa 
LRGUK                 0.070   leucine-rich repeats and guanylate kinase domain con...
LRRC50                0.063   leucine rich repeat containing 50 
LRRC49                0.062   leucine rich repeat containing 49 
LRRCC1                0.054   sodium channel associated protein 2 isoform a [Homo...
NISCH                 0.052   nischarin 
CEP97                 0.051   centrosomal protein 97kDa 
LRRC6                 0.050   leucine rich repeat containing 6 
LOC654258             0.048   PREDICTED: similar to leucine rich repeat containin...
LRRC23                0.048   leucine rich repeat containing 23 isoform a 
LRRC23                0.048   leucine rich repeat containing 23 isoform a 
DNAL1                 0.044   axonemal dynein light chain 1 
ANP32B                0.040   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
SNRPA1                0.038   small nuclear ribonucleoprotein polypeptide A' [Homo...
LRRC7                 0.034   leucine rich repeat containing 7 
ANP32A                0.034   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
LRRC46                0.034   leucine rich repeat containing 46 
LRIG3                 0.033   leucine-rich repeats and immunoglobulin-like domains...
LRRIQ1                0.033   leucine-rich repeats and IQ motif containing 1 isof...
LRRIQ1                0.033   leucine-rich repeats and IQ motif containing 1 isof...
LRIG3                 0.033   leucine-rich repeats and immunoglobulin-like domain...
LRRC67                0.033   leucine rich repeat containing 67 
LGR6                  0.033   leucine-rich repeat-containing G protein-coupled rec...
LGR6                  0.033   leucine-rich repeat-containing G protein-coupled rec...
LOC100129335          0.031   PREDICTED: Leucine-rich repeat-containing protein E...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press