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Search of human proteins with 113429443
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113429443 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
(492 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|113429443 PREDICTED: transmembrane protein 46-like [Homo sapi... 1031 0.0
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi... 974 0.0
gi|223633980 hypothetical protein LOC729993 isoform 1 [Homo sapi... 174 2e-43
gi|223633982 hypothetical protein LOC729993 isoform 2 [Homo sapi... 169 7e-42
gi|223633890 hypothetical protein LOC729956 [Homo sapiens] 136 4e-32
gi|211904177 hypothetical protein LOC388336 [Homo sapiens] 132 9e-31
gi|110832843 TBP-associated factor 4 [Homo sapiens] 66 6e-11
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 59 8e-09
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 59 1e-08
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 57 4e-08
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 56 9e-08
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 55 1e-07
gi|56090523 shisa homolog 2 [Homo sapiens] 55 2e-07
gi|39930575 shisa homolog 4 [Homo sapiens] 54 2e-07
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 54 2e-07
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 54 3e-07
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 53 7e-07
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 53 7e-07
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 52 9e-07
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 52 9e-07
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 52 9e-07
gi|163965366 nascent polypeptide-associated complex alpha subuni... 52 1e-06
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 52 2e-06
gi|239755810 PREDICTED: hypothetical protein [Homo sapiens] 51 2e-06
gi|239750310 PREDICTED: hypothetical protein [Homo sapiens] 51 2e-06
gi|239744621 PREDICTED: hypothetical protein [Homo sapiens] 51 2e-06
gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo sa... 51 2e-06
gi|122937450 shisa homolog 3 [Homo sapiens] 51 2e-06
gi|169210581 PREDICTED: hypothetical protein LOC400558 [Homo sap... 50 5e-06
gi|169210101 PREDICTED: hypothetical protein LOC400558 [Homo sap... 50 5e-06
>gi|113429443 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 492
Score = 1031 bits (2666), Expect = 0.0
Identities = 492/492 (100%), Positives = 492/492 (100%)
Query: 1 MARAGARGLLGGRRPPGLRLALALRLALLLARPPSGRAGAPEAQGPAAPGTTAPEGGDRC 60
MARAGARGLLGGRRPPGLRLALALRLALLLARPPSGRAGAPEAQGPAAPGTTAPEGGDRC
Sbjct: 1 MARAGARGLLGGRRPPGLRLALALRLALLLARPPSGRAGAPEAQGPAAPGTTAPEGGDRC 60
Query: 61 RGYYDVMGQWDPPFNCSSGAYSFCCGTCGYRFCCHDGPRRLDQSRCSNYDTPAWVQTGRP 120
RGYYDVMGQWDPPFNCSSGAYSFCCGTCGYRFCCHDGPRRLDQSRCSNYDTPAWVQTGRP
Sbjct: 61 RGYYDVMGQWDPPFNCSSGAYSFCCGTCGYRFCCHDGPRRLDQSRCSNYDTPAWVQTGRP 120
Query: 121 PARARDTAAPRDPGRERSHTAVYAVCGVAALLVLAGIGARLGLERAHSPRARRTVTRALT 180
PARARDTAAPRDPGRERSHTAVYAVCGVAALLVLAGIGARLGLERAHSPRARRTVTRALT
Sbjct: 121 PARARDTAAPRDPGRERSHTAVYAVCGVAALLVLAGIGARLGLERAHSPRARRTVTRALT 180
Query: 181 ELLKQPGPQEPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPRTPRLARASPPGEPFMR 240
ELLKQPGPQEPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPRTPRLARASPPGEPFMR
Sbjct: 181 ELLKQPGPQEPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPRTPRLARASPPGEPFMR 240
Query: 241 VAPPGLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEG 300
VAPPGLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEG
Sbjct: 241 VAPPGLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEG 300
Query: 301 GVNRGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAA 360
GVNRGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAA
Sbjct: 301 GVNRGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAA 360
Query: 361 ALKAAEAAPRDFCQRFPALEPSPRQPPARAPRPSPDLPAPLDACPWAPPVYAPPAAPGPY 420
ALKAAEAAPRDFCQRFPALEPSPRQPPARAPRPSPDLPAPLDACPWAPPVYAPPAAPGPY
Sbjct: 361 ALKAAEAAPRDFCQRFPALEPSPRQPPARAPRPSPDLPAPLDACPWAPPVYAPPAAPGPY 420
Query: 421 AAWTSSRPARPAPLSHPTARAFQVPRRPGHAARRQFSVKMPETFNPQLPGLYGSAGRGSR 480
AAWTSSRPARPAPLSHPTARAFQVPRRPGHAARRQFSVKMPETFNPQLPGLYGSAGRGSR
Sbjct: 421 AAWTSSRPARPAPLSHPTARAFQVPRRPGHAARRQFSVKMPETFNPQLPGLYGSAGRGSR 480
Query: 481 YLRTNSKTEVTV 492
YLRTNSKTEVTV
Sbjct: 481 YLRTNSKTEVTV 492
>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 547
Score = 974 bits (2517), Expect = 0.0
Identities = 481/547 (87%), Positives = 481/547 (87%), Gaps = 55/547 (10%)
Query: 1 MARAGARGLLGGRRPPGLRLALALRLALLLARPPSGRAGAPEAQGPAAPGTTAPEGGDRC 60
MARAGARGLLGGRRPPGLRLALALRLALLLARPPSGRAGAPEAQGPAAPGTTAPEGGDRC
Sbjct: 1 MARAGARGLLGGRRPPGLRLALALRLALLLARPPSGRAGAPEAQGPAAPGTTAPEGGDRC 60
Query: 61 RGYYDVMGQWDPPFNCSSGAYSFCCGTCGYRFCCHDGPRRLDQSRCSNYDTPAWVQTGRP 120
RGYYDVMGQWDPPFNCSSGAYSFCCGTCGYRFCCHDGPRRLDQSRCSNYDTPAWVQTGRP
Sbjct: 61 RGYYDVMGQWDPPFNCSSGAYSFCCGTCGYRFCCHDGPRRLDQSRCSNYDTPAWVQTGRP 120
Query: 121 PARARDTAAPRDPGRERSHTAVYAVCGVAALLVLAGIGARLGLERAHSPRARRTVTRALT 180
PARARDTAAPRDPGRERSHTAVYAVCGVAALLVLAGIGARLGLERAHSPRARRTVTRALT
Sbjct: 121 PARARDTAAPRDPGRERSHTAVYAVCGVAALLVLAGIGARLGLERAHSPRARRTVTRALT 180
Query: 181 ELLKQPGPQEPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPRTPRLARASPPGEPFMR 240
ELLKQPGPQEPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPRTPRLARASPPGEPFMR
Sbjct: 181 ELLKQPGPQEPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPRTPRLARASPPGEPFMR 240
Query: 241 VAPPGLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEG 300
VAPPGLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEG
Sbjct: 241 VAPPGLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEG 300
Query: 301 GVNRGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAA 360
GVNRGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAA
Sbjct: 301 GVNRGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAA 360
Query: 361 ALKAAEAAPRDFCQRF-----------PALEPS--------------------------- 382
ALKAA R R PA PS
Sbjct: 361 ALKAAVPRARRSANRLPRPSGPRPRPAPARSPSQSPAGTPCPVLSLGARRGVTLPCPVPA 420
Query: 383 -----------------PRQPPARAPRPSPDLPAPLDACPWAPPVYAPPAAPGPYAAWTS 425
PRQPPARAPRPSPDLPAPLDACPWAPPVYAPPAAPGPYAAWTS
Sbjct: 421 EAAPRDFCQRFPALEPSPRQPPARAPRPSPDLPAPLDACPWAPPVYAPPAAPGPYAAWTS 480
Query: 426 SRPARPAPLSHPTARAFQVPRRPGHAARRQFSVKMPETFNPQLPGLYGSAGRGSRYLRTN 485
SRPARPAPLSHPTARAFQVPRRPGHAARRQFSVKMPETFNPQLPGLYGSAGRGSRYLRTN
Sbjct: 481 SRPARPAPLSHPTARAFQVPRRPGHAARRQFSVKMPETFNPQLPGLYGSAGRGSRYLRTN 540
Query: 486 SKTEVTV 492
SKTEVTV
Sbjct: 541 SKTEVTV 547
>gi|223633980 hypothetical protein LOC729993 isoform 1 [Homo
sapiens]
Length = 465
Score = 174 bits (441), Expect = 2e-43
Identities = 85/163 (52%), Positives = 111/163 (68%), Gaps = 7/163 (4%)
Query: 28 LLLARPPSGRAGAPEAQGPAA---PGTTAPEGGDRCRGYYDVMGQWDPPFNCSSGAYSFC 84
LL SG A ++G A P T AP D CRGY+DVMGQWDPPFNCSSG + FC
Sbjct: 81 LLAGGNRSGAASGEASEGAEASDAPPTRAPTP-DFCRGYFDVMGQWDPPFNCSSGDFIFC 139
Query: 85 CGTCGYRFCCHDGPRRLDQSRCSNYDTPAWVQTGRPPARARDTAAPRDPGRERSHTAVYA 144
CGTCG+RFCC RRL+QS C+NYDTP W+ TG+PPAR D DP +++++ VY
Sbjct: 140 CGTCGFRFCCTFKKRRLNQSTCTNYDTPLWLNTGKPPARKDDPL--HDPTKDKTNLIVYI 197
Query: 145 VCGVAALLVLAGIGARLGLERAHSPRARRTVTRALTELLKQPG 187
+CGV A++VL GI +LGLE+AH P+ R ++RAL ++++ G
Sbjct: 198 ICGVVAVMVLVGIFTKLGLEKAHRPQ-REHMSRALADVMRPQG 239
>gi|223633982 hypothetical protein LOC729993 isoform 2 [Homo
sapiens]
Length = 262
Score = 169 bits (427), Expect = 7e-42
Identities = 84/159 (52%), Positives = 106/159 (66%), Gaps = 7/159 (4%)
Query: 28 LLLARPPSGRAGAPEAQGPAA---PGTTAPEGGDRCRGYYDVMGQWDPPFNCSSGAYSFC 84
LL SG A ++G A P T AP D CRGY+DVMGQWDPPFNCSSG + FC
Sbjct: 81 LLAGGNRSGAASGEASEGAEASDAPPTRAPTP-DFCRGYFDVMGQWDPPFNCSSGDFIFC 139
Query: 85 CGTCGYRFCCHDGPRRLDQSRCSNYDTPAWVQTGRPPARARDTAAPRDPGRERSHTAVYA 144
CGTCG+RFCC RRL+QS C+NYDTP W+ TG+PPAR D DP +++++ VY
Sbjct: 140 CGTCGFRFCCTFKKRRLNQSTCTNYDTPLWLNTGKPPARKDDPL--HDPTKDKTNLIVYI 197
Query: 145 VCGVAALLVLAGIGARLGLERAHSPRARRTVTRALTELL 183
+CGV A++VL GI +LGLE+AH P+ R ++R LL
Sbjct: 198 ICGVVAVMVLVGIFTKLGLEKAHRPQ-REHMSRLYDNLL 235
>gi|223633890 hypothetical protein LOC729956 [Homo sapiens]
Length = 538
Score = 136 bits (343), Expect = 4e-32
Identities = 154/530 (29%), Positives = 207/530 (39%), Gaps = 98/530 (18%)
Query: 30 LARPPSGRAGAPEAQGPAAPGT-TAPEGG-----------DRCRGYYDVMGQWDPPFNCS 77
L R G A P A GT T P GG + C GYYDVMGQ+D FNCS
Sbjct: 40 LRRLTGALTGGGGAASPGANGTRTGPAGGAGAAARAPPPAELCHGYYDVMGQYDATFNCS 99
Query: 78 SGAYSFCCGTCGYRFCCHDGPRRLDQSRCSNYDTPAWVQTGRP----------------P 121
+G+Y FCCGTC YRFCC RL Q+ CSNYDTP W T P P
Sbjct: 100 TGSYRFCCGTCHYRFCCEHRHMRLAQASCSNYDTPRWATTPPPLAGGAGGAGGAGGGPGP 159
Query: 122 ARA------RDTAAPRDPGRERSHTAVYAVCGVAALLVLAGIGARLGLERA-HSPRARR- 173
+A R A G + Y VCGV + + G+GA++ +A +PRA R
Sbjct: 160 GQAGWLEGGRTGGAGGRGGEGPGGSTAYVVCGVISFALAVGVGAKVAFSKASRAPRAHRD 219
Query: 174 -TVTRALTELLKQ---PG--PQEPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGP-RTP 226
V RAL ++L+ PG P +L P +GG D +P +P N +TP
Sbjct: 220 INVPRALVDILRHQAGPGTRPDRARSSSLTPGIGG------PDSMPPRTPKNLYNTVKTP 273
Query: 227 RLA-RASPPGEPFMRVA--------------PPGLAAAAAARDSEPGPVPGAGGCGEDRL 271
L RA PP P + + PP AA + + + D
Sbjct: 274 NLDWRALPPPSPSLHYSTLSCSRSFHNLSHLPPSYEAAVKSELNRYSSLKRLAEKDLDEA 333
Query: 272 GSQPRPENGPPGSHRTASGRGLRRGDSEGGVNRGI--GPSRVSLL-APDKKRLNNAPRGS 328
+ RP P G T LRR + GG GP + L AP+ +R+ +
Sbjct: 334 YLKRRPLELPRG---TLPLHALRRPGTGGGYRMEAWGGPEELGLAPAPNPRRVMSQEHLL 390
Query: 329 AAPGPPRGPRLQGGGSLTLQPDYAKYATFKAAALKAAEAAPRDFCQRFPALEPSPRQPPA 388
G R L Q + + +P R PAL P P +
Sbjct: 391 GDGGRSRYEFTLPRARLVSQEHLLLSSPEALRQSREHLLSP----PRSPALPPDPTARAS 446
Query: 389 RAPRPSPDL------PAPLDACPWAPPVYAPPAAPGPYAAWTSSRPARPAPLSHPTARAF 442
A S L P PL P PP++ + +PA +S
Sbjct: 447 LAASHSNLLLGPGGPPTPLRGLP-------PPSSLHAHHHHALHGSPQPAWMSDAGGGGG 499
Query: 443 QVPRRPGHAARRQFSVKMPETFNPQLPGLYGSAGRGSRYLRTNSKTEVTV 492
+ RRP +RQ +++ + +PG + ++LRT SK EVTV
Sbjct: 500 TLARRP--PFQRQGTLEQLQF----IPGHH-----LPQHLRTASKNEVTV 538
>gi|211904177 hypothetical protein LOC388336 [Homo sapiens]
Length = 551
Score = 132 bits (331), Expect = 9e-31
Identities = 71/187 (37%), Positives = 99/187 (52%), Gaps = 19/187 (10%)
Query: 5 GARGLLGGRRPPGLRLALALRLALLLARPPSG-RAGAPEAQGPAAPGTTAPEGGDRCRGY 63
G R L G R PG+ P +G R G P A AA +A + C GY
Sbjct: 54 GGRELNGTARAPGI--------------PEAGSRRGQPAAAVAAA--ASAAVTYETCWGY 97
Query: 64 YDVMGQWDPPFNC--SSGAYSFCCGTCGYRFCCHDGPRRLDQSRCSNYDTPAWVQTGRPP 121
YDV GQ+D F C S Y +CCGTC YRFCC +LDQ +C+NY +P WVQT
Sbjct: 98 YDVSGQYDKEFECNNSESGYLYCCGTCYYRFCCKKRHEKLDQRQCTNYQSPVWVQTPSTK 157
Query: 122 ARARDTAAPRDPGRERSHTAVYAVCGVAALLVLAGIGARLGLERAHSPRARRTVTRALTE 181
+ DP +++++ VY CGV A +++AG+ A++ ++AH P + RAL +
Sbjct: 158 VVSPGPENKYDPEKDKTNFTVYITCGVIAFVIVAGVFAKVSYDKAHRPPREMNIHRALAD 217
Query: 182 LLKQPGP 188
+L+Q GP
Sbjct: 218 ILRQQGP 224
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 66.2 bits (160), Expect = 6e-11
Identities = 82/249 (32%), Positives = 90/249 (36%), Gaps = 26/249 (10%)
Query: 190 EPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPRTPRLARASPPGEPFMRVAPPGLAAA 249
EP P P GG Q + G PR P AGP P A+ PP E P AAA
Sbjct: 88 EPPPAGRARPGGGGPQ-RPGPPSPR-RPLVPAGPAPPA-AKLRPPPEGSAGSCAPVPAAA 144
Query: 250 AAARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEGGVNRGIGPS 309
A A EP P A G L ++ P GP G G G G
Sbjct: 145 AVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAAL 204
Query: 310 RVS--LLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAAALKAAEA 367
S AP +NN P P P G++ P F AA A A
Sbjct: 205 LNSHHAAAPAVSLVNNGPAALLPLPKPAAP-----GTVIQTP------PFVGAAAPPAPA 253
Query: 368 APRDFCQRFPALEPSPRQPPARAPRPSPDLPAPLDACPWAP--PVYAPPAAPGPYAAWT- 424
AP P P+P PA AP P P PA L P P P A PA P P AA
Sbjct: 254 APS------PPAAPAP-AAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNG 306
Query: 425 SSRPARPAP 433
S A PAP
Sbjct: 307 GSAGAAPAP 315
Score = 64.3 bits (155), Expect = 2e-10
Identities = 83/291 (28%), Positives = 102/291 (35%), Gaps = 51/291 (17%)
Query: 218 HNSAGPRTP--RLARASPPGEPFMRVAPPGLAAAAAARDSE--PGPVPGAGGCGEDRLGS 273
H+ PRTP R A A G + +P G A A A +E PG P G R G
Sbjct: 40 HHHLAPRTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGG 99
Query: 274 QPRPENGPPGSHRTASGRG-------LRRGDSEGGVNRGIGPSRVSLLA-PDKKRLNNA- 324
GPP R G LR + P+ ++ A P+ A
Sbjct: 100 GGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAK 159
Query: 325 PRGSAA--------PGPPRGPRLQGGGSLTLQPDYAKYATFKAAALKAAEAAPRDFCQRF 376
P G AA PGP GP G P A+ AA L + AA
Sbjct: 160 PAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAA------- 212
Query: 377 PALEPSPRQPPARAPRPSPDLPAPL--------DACPWAPPVYAPPAAPGPYAAWTSSRP 428
PA+ P A P P P P + A P AP +PPAAP P A + P
Sbjct: 213 PAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPP 272
Query: 429 ARPAPLSHPTARAFQVPRRPGHAARRQFSVKMPETFNPQLPGLYGSAGRGS 479
PAP + + R PGH A P T P +P + GS
Sbjct: 273 PPPAPAT--------LARPPGHPAG-------PPTAAPAVPPPAAAQNGGS 308
Score = 45.8 bits (107), Expect = 9e-05
Identities = 78/311 (25%), Positives = 91/311 (29%), Gaps = 21/311 (6%)
Query: 33 PPSGRAGAPEAQGPAAPGTTAPEGGDRCRGYYDVMGQWDPPFNCSSGAYSFCCGTCGYRF 92
PP+GRA P GP PG +P G + PP S+G+ C
Sbjct: 90 PPAGRA-RPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGS----CAPVPAAA 144
Query: 93 CCHDGPRRLDQSRCSNYDTPAW-VQTGRPPARARDTAAPRDPGRERSHTAVYAVCGVAAL 151
GP A + G P PG+ G A
Sbjct: 145 AVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKP---------AGPGAA 195
Query: 152 LVLAGIGARLGLERAHSPRARRTVTRALTELLKQPGPQEPLPPTLGPPLGGCVQVQMGDG 211
L G A L A +P A V LL P P P PP G
Sbjct: 196 QTLNGSAALLNSHHAAAP-AVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAA-APPAPA 253
Query: 212 LPRGSPHNSAGPRTPRLARASPPGEPFMRVAPPGLAAAAAARDSEPGPVPGAGGCGEDRL 271
P SP + P P A PP P PPG A P A G
Sbjct: 254 AP--SPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGA 311
Query: 272 GSQPRPENGPPGSHRTASGRGLRRGDSEGGVNRGIGPSRVSLLAPD-KKRLNNAPRGSAA 330
P P G P G G GV + P RV AP + L + S A
Sbjct: 312 APAPAPAAGGPAGVSGQPGPGAAAAAPAPGV-KAESPKRVVQAAPPAAQTLAASGPASTA 370
Query: 331 PGPPRGPRLQG 341
GP +QG
Sbjct: 371 ASMVIGPTMQG 381
Score = 43.9 bits (102), Expect = 3e-04
Identities = 84/311 (27%), Positives = 95/311 (30%), Gaps = 63/311 (20%)
Query: 187 GPQEPLPPTLGPPLGGCVQVQMGDGLP----RGSPHNSAGPRTPRLARAS----PPGEPF 238
GPQ P PP+ PL V G P R P SAG P A A+ P P
Sbjct: 101 GPQRPGPPSPRRPL-----VPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPA 155
Query: 239 MRVAPPGLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDS 298
P G AA AA PGP PG G G P GP G+ +T +G
Sbjct: 156 GPAKPAGPAALAARAGPGPGPGPGPGP------GPGPGKPAGP-GAAQTLNGSAALLNSH 208
Query: 299 EGG------VNRG----------IGPSRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGG 342
VN G P V P AP AAP PP P
Sbjct: 209 HAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAA--APPAPAAPSPPAAPAPAAP 266
Query: 343 GSLTLQPDYAKYATFK-----AAALKAAEAAPRDFCQR-------FPALEPSPRQPP--- 387
+ P A + A AA A P + PA P+ P
Sbjct: 267 AAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVS 326
Query: 388 --------ARAPRPSPDLPAPLDACPWAPPVYAPPAAPGPYAAWTSS--RPARPAPLSHP 437
A AP P +P APP AA GP + S P L P
Sbjct: 327 GQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSP 386
Query: 438 TARAFQVPRRP 448
A P P
Sbjct: 387 AAVPPPAPGTP 397
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 59.3 bits (142), Expect = 8e-09
Identities = 130/503 (25%), Positives = 153/503 (30%), Gaps = 97/503 (19%)
Query: 1 MARAGARGLLGGRRPPGLRLALALRLALLLARPPSGRAGAPEAQGPAAP----GTTAPEG 56
M +G RGL G PPG + P G G P A GP P G G
Sbjct: 181 MGPSGPRGLPG---PPGAPGPQGFQ-------GPPGEPGEPGASGPMGPRGPPGPPGKNG 230
Query: 57 GDRCRGYYDVMGQWDPPFNCSSGAYSFCCGTCGYRFCCHDGPRRLDQSRCSNYDTPAWVQ 116
D G G+ PP + G G + H G LD
Sbjct: 231 DDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKG--HRGFSGLDG------------- 275
Query: 117 TGRPPARARDTAAPRDPGRERSHTAVYAVCGVAALLVLAGIGARLGLERAHSPRARRTVT 176
A+ A P P E G L G R G R T
Sbjct: 276 -------AKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAT 328
Query: 177 RALTELLKQPGPQEPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPRTPRLARASPPGE 236
A GP P P P G V + G+ P+G P S GP+ R GE
Sbjct: 329 GAA-------GPPGPTGPAGPPGFPGAVGAK-GEAGPQG-PRGSEGPQGVR-------GE 372
Query: 237 PFMRVAPPGLAAAAA-----ARDSEPGP--------VPGAGGCGEDRLGSQPRPENGPPG 283
P PPG A AA D +PG + GA G R S P+ GPPG
Sbjct: 373 P----GPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPG 428
Query: 284 SHRTASGRGLRRGDSEGGVNRGIGPSRVSLLAPDKKRLNNAPRGS-AAPGP---PRGPRL 339
+ G + G GP V + P RG+ PGP P P
Sbjct: 429 PKGNSGEPGAPGSKGDTGAKGEPGP--VGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGE 486
Query: 340 QGGGSLTLQPDYAKYATFKAAALKAAEAAPRDFCQRFPALEPSPRQPPARAPRPSPDLPA 399
+GG P A K A + P P+ P A RP
Sbjct: 487 RGGPGSRGFPGADGVAGPKGPAGERGSPGP-----------AGPKGSPGEAGRPGE---- 531
Query: 400 PLDACPWAPPVYAPPAAPGPYAAWTSSRPA----RPAPLSHPTARA-FQVPRRPGHAARR 454
P A + P +PGP PA RP P P AR V PG
Sbjct: 532 --AGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAA 589
Query: 455 QFSVKMPETFNPQLPGLYGSAGR 477
K E P PG G AG+
Sbjct: 590 GEPGKAGERGVPGPPGAVGPAGK 612
Score = 51.2 bits (121), Expect = 2e-06
Identities = 104/432 (24%), Positives = 126/432 (29%), Gaps = 89/432 (20%)
Query: 3 RAGARGLLGGRRPPGLRLALALRLALLLARPPSGRAGAPEAQGPAAPGTTAPEGGDR--- 59
+AG RG+ G PPG A P+G+ G AQGP P A E G++
Sbjct: 594 KAGERGVPG---PPG-------------AVGPAGKDGEAGAQGPPGPAGPAGERGEQGPA 637
Query: 60 -CRGYYDVMGQWDPPFNCSSGAYSFCCGTCGYRFCCHDGPRRLDQSRCSNYDTPAWVQTG 118
G+ + G PP G G GP R P
Sbjct: 638 GSPGFQGLPGPAGPPGEAGKPGEQGVPGDLG-----APGPSGARGER----GFPGERGVQ 688
Query: 119 RPPARARDTAAPRDPGRE--RSHTAVYAVCGVAALLVLAGIGARLGLERAHSPRARRTVT 176
PP A A PG + + G L G+ G P+ R
Sbjct: 689 GPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRG-D 747
Query: 177 RALTELLKQPGPQ--EPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPRTPRLARASP- 233
PG L +GPP G+ P +GP P AR +P
Sbjct: 748 AGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGP-------SGPAGPTGARGAPG 800
Query: 234 -PGEPFMRVAPPGLA--AAAAARDSEPGP--VPGAGGCGEDRLGSQPRPENGPPGSHRTA 288
GEP PPG A A D +PG PG G D P GPPG
Sbjct: 801 DRGEP----GPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNV 856
Query: 289 SGRGLRRGDSEGGVNRGIG-PSRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTL 347
G + G G P + P P G+A P P GP + GG
Sbjct: 857 GAPGAKGARGSAGPPGATGFPGAAGRVGPP------GPSGNAGPPGPPGPAGKEGG---- 906
Query: 348 QPDYAKYATFKAAALKAAEAAPRDFCQRFPALEPSPRQPPARAPRPSPDLPAPLDACPWA 407
+ P E P P P P PA P A
Sbjct: 907 ---------------------------KGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGA 939
Query: 408 PPVYAPPAAPGP 419
P PGP
Sbjct: 940 DGPAGAPGTPGP 951
Score = 48.1 bits (113), Expect = 2e-05
Identities = 86/322 (26%), Positives = 100/322 (31%), Gaps = 96/322 (29%)
Query: 186 PGPQEPLPPTLGPPLGG------------------CVQVQMGDGLPRG--SPHNSAGPRT 225
PGP P P P LGG V MG PRG P + GP+
Sbjct: 141 PGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQ- 199
Query: 226 PRLARASPPGEPFMRVAPPGLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRP-ENGPPG- 283
PPGEP PG + R PGP PG G + G RP E GPPG
Sbjct: 200 ---GFQGPPGEP----GEPGASGPMGPR-GPPGP-PGKNG-DDGEAGKPGRPGERGPPGP 249
Query: 284 ----------------SHRTASGRGLRRGDS-------------EGGVNRGIGP------ 308
HR SG +GD+ E G +GP
Sbjct: 250 QGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGE 309
Query: 309 -SRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAAALKAAEA 367
R P R N+ G+A P P GP G F A EA
Sbjct: 310 RGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPG--------------FPGAVGAKGEA 355
Query: 368 APRDFCQRFPALEPSPRQPPARAPRPSPDLPAPLDACPWAPPVYAPPAAPGPYAAWTSSR 427
P+ P + P + R P P P A A P P A P A +
Sbjct: 356 GPQG---------PRGSEGP-QGVRGEPGPPGPAGA---AGPAGNPGADGQPGAKGANGA 402
Query: 428 PARPAPLSHPTARAFQVPRRPG 449
P P AR P+ PG
Sbjct: 403 PGIAGAPGFPGARGPSGPQGPG 424
Score = 44.3 bits (103), Expect = 3e-04
Identities = 133/525 (25%), Positives = 158/525 (30%), Gaps = 71/525 (13%)
Query: 4 AGARGLLGGRRPPGLRLALALRLALLLARPPSGRAGAPEAQG-PAAPGTTAPEGGDRCRG 62
AG RG G PG + L P G AG P QG P G P G RG
Sbjct: 628 AGERGEQGPAGSPGFQ-------GLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERG 680
Query: 63 YYDVMGQWDPPFNCSSGAYSFCCGTCGYRFCCHDGPRRLDQSRCSNYDTPAWV-QTGRP- 120
+ G PP + G G + Q P G P
Sbjct: 681 FPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPG 740
Query: 121 PARARDTAAPRDPGRERSHTAVYAVCGVAALLVLAGIGARLGLERAHSPRARRTVTRALT 180
P R A P+ V + G AG G E S A T R
Sbjct: 741 PKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKG-ESGPSGPAGPTGARGAP 799
Query: 181 ELLKQPGPQEPLPPTLGPPLGGCVQV----QMGDGLPRGS--PHNSAGPRTP-------- 226
+PGP P P P G Q + GD +G P AGP P
Sbjct: 800 GDRGEPGP--PGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVG 857
Query: 227 ------RLARASPPGEPFM-----RVAPPGLAAAAAARDSEPGPVPGAGGCG-EDRLGSQ 274
A PPG RV PPG + A PGP GG G G
Sbjct: 858 APGAKGARGSAGPPGATGFPGAAGRVGPPG-PSGNAGPPGPPGPAGKEGGKGPRGETGPA 916
Query: 275 PRP-ENGPPGSHRTASGRGLRRGDSEGGV-----NRGIGPSRVSLLAPDKKRLNNAPRGS 328
RP E GPPG A +G D G +GI R + P ++ P
Sbjct: 917 GRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFP--- 973
Query: 329 AAPGPPRGPRLQGGGSLTLQPDYAKYATFKAAALKAAEAAPRDFCQRFPALEPSPRQ--- 385
PGP P QG + + A E+ + P E SP +
Sbjct: 974 GLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGR----EGAPGAEGSPGRDGS 1029
Query: 386 PPARAPRPSPDLPAPLDACPWAPPVYAPPAAPGPYAAWTSSRPARPA-PLSHPTARAFQV 444
P A+ R PA P AP P G + PA PA P+ AR
Sbjct: 1030 PGAKGDRGETG-PAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAG 1088
Query: 445 PRRP-------------GHAARRQFSVKMPETFNPQLPGLYGSAG 476
P+ P G R FS P PG G +G
Sbjct: 1089 PQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSG 1133
Score = 34.7 bits (78), Expect = 0.20
Identities = 75/299 (25%), Positives = 93/299 (31%), Gaps = 29/299 (9%)
Query: 191 PLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPRTPRLARASPPGEPFMR-----VAPPG 245
P PP P G + G+ +G P AGP R P G P + PPG
Sbjct: 601 PGPPGAVGPAG-----KDGEAGAQGPP-GPAGPAGER-GEQGPAGSPGFQGLPGPAGPPG 653
Query: 246 LAAAAAARDSEPGPV--PGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEGGVN 303
A PG + PG G +R R GPPG G D G +
Sbjct: 654 -EAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKG-D 711
Query: 304 RGIGPSRVSLLAPDKKRLNNAPRGSAAPGPP--RGPRLQGGGSLTLQPDYAKYATFKAAA 361
G + S AP + + + PGP RG G + D + T
Sbjct: 712 AGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGP 771
Query: 362 LKAAEAAPRDFCQRFPALEPSP---RQPPARAPRPSPDLPAPLDACPWAPPVYAPPAAPG 418
A AP D + P+ P R P P P PA P A PG
Sbjct: 772 PGPA-GAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPG 830
Query: 419 PYAAWTSSRPARPAPLSHPTARAFQVPRRPGHAARRQFSVKMPETFNPQLPGLYGSAGR 477
A + P PA + P V AR P G G+AGR
Sbjct: 831 DAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAG-------PPGATGFPGAAGR 882
Score = 31.2 bits (69), Expect = 2.2
Identities = 101/390 (25%), Positives = 120/390 (30%), Gaps = 82/390 (21%)
Query: 5 GARGLLGGRRPPGLRLALALRLALLLARPP--SGRAGAPEAQGPAAP-GTTAPEGGDRCR 61
GA+G G PPG A A PP SG AG P GPA G P G
Sbjct: 860 GAKGARGSAGPPG---ATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPA 916
Query: 62 GYYDVMGQWDPPFNCSSGAYSFCCGTCGYRFCCHDGPRRLDQSRCSNYDTPAWVQTGRP- 120
G +G PP G G GP+ + R + G P
Sbjct: 917 GRPGEVGPPGPPGPAGEKGSPGADGPAGAPGT--PGPQGIAGQRGVVGLPGQRGERGFPG 974
Query: 121 ---PARARDTAAPRDPGRERSHTAVYAVCGVAALLVLAGIGARLGLE----RAHSPRARR 173
P+ P ER G+A +G G E R SP A+
Sbjct: 975 LPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKG 1034
Query: 174 TVTRALTELLKQPG-PQEP-LPPTLGPPLGGCVQVQMGDGLPRG-----SPHNSAGPRTP 226
R T PG P P P +GP + + G P G AGP+ P
Sbjct: 1035 D--RGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGP 1092
Query: 227 RLARAS-----------------------PPGEPFMRVAPPGLAAAAAARDSEPGPVPGA 263
R + PPG P + P G + A R GP A
Sbjct: 1093 RGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQ-GPSGASGPAGPR----GPPGSA 1147
Query: 264 GGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEGGVNRGIGPSRVSLLAPDKKRLNN 323
G G+D L P P GPPG RG R GD+ +GP
Sbjct: 1148 GAPGKDGLNGLPGP-IGPPGP------RG-RTGDA-----GPVGP--------------- 1179
Query: 324 APRGSAAPGPPRGPRLQGGGSLTLQPDYAK 353
P PGPP P S QP K
Sbjct: 1180 -PGPPGPPGPPGPPSAGFDFSFLPQPPQEK 1208
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 58.5 bits (140), Expect = 1e-08
Identities = 107/391 (27%), Positives = 139/391 (35%), Gaps = 88/391 (22%)
Query: 120 PPARARDTAAPRDPGRERSHTAVYAVCGVAALLVLAGIGARLGLERAHSPRARRTVTRAL 179
P ARA PR PG R V AAL VL GA +G + + RA +
Sbjct: 17 PAARAPGLLTPRPPGSPRPPPPVTP----AALRVLGAAGA-VG-RKPLAERAGGIGGATI 70
Query: 180 TELLKQPGPQEPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGP-----RTPRLARASPP 234
E + GP T PP G G+ P + + S GP R R P
Sbjct: 71 PESAPRAGPTR----TSRPPASG-----RGERAP-PAKNTSPGPVSSPGRASGTTRPGPL 120
Query: 235 GEPFMRV-------------APPGLAAAAAARDSEPGPVPG------------AG---GC 266
G+ +R+ AP A +A AR GP PG AG G
Sbjct: 121 GQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGL 180
Query: 267 GEDRLGSQPR-PENGPPGSHRTASGRGL--------RRGDSEGGVNRGIGPSRVSLLAPD 317
++PR P GP S +AS RR + GG+ R S S P
Sbjct: 181 PRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPL 240
Query: 318 KKRLNNAP--RGS-AAPGPPRGPRLQGGGSLTLQPDYAKYATFKAAALKAAEAAPRDFCQ 374
+ P RG+ AP P P+ +G +L P A AL ++P
Sbjct: 241 SSPARSGPSARGTPRAPAHPSQPKPKGLQALR-PPQVTPPRKDAAPALGPLSSSP--LAT 297
Query: 375 RFPALEPSPRQPPARAPRPSPD----------------------LPAPLDACPWAPPVYA 412
P+ PSP PP+ PSP LP+P + PP A
Sbjct: 298 PSPSAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQA 357
Query: 413 PPAAPGPYAAWTSSRPARP--APLSHPTARA 441
PPA P S PA P +PL+ P+ +A
Sbjct: 358 PPALALPPLQAPPSPPASPPLSPLATPSPQA 388
Score = 53.9 bits (128), Expect = 3e-07
Identities = 103/382 (26%), Positives = 139/382 (36%), Gaps = 56/382 (14%)
Query: 116 QTGRPPARARDTAAPRDPGRERSHTAVYAVCGVAALLVLAGIGARLGLE-RAHSPRARRT 174
+T RPPA R AP P + S V + G A+ G + GL A AR
Sbjct: 81 RTSRPPASGRGERAP--PAKNTSPGPVSSP-GRASGTTRPGPLGQKGLRISAEETVARGK 137
Query: 175 VTRALTELLKQPGPQE----PLPPTLGPPLGGCVQVQMGD-GLPRGSPHNSAGPRTPRLA 229
T A G + P P T P + + + GLPR +P SA PR
Sbjct: 138 ATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAP--SARPR----- 190
Query: 230 RASPPGEPFMRVAPPGLAAAAAARDSEPGPV----PGAGGCGEDRLGSQPRPENGPPGSH 285
PP E + +++A+ +EP P P AGG G R S+ + P S
Sbjct: 191 ---PPTEGPRK----SVSSASEHSTTEPSPAARRRPSAGG-GLQRPASRSLSSSATPLSS 242
Query: 286 RTASG---RGLRRGDSEGGVNR--GIGPSRVSLLAPDKKRLNNA-----------PRGSA 329
SG RG R + + G+ R + P +K A P SA
Sbjct: 243 PARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSA 302
Query: 330 APGPPRGPRLQGGGSLTLQPDYAKYATFKAAALKAAEA---APRDFCQRFPALEPSPRQP 386
P P P LQ S P + + L+A + +P P P P+ P
Sbjct: 303 PPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSP----PLSPLATPPPQAP 358
Query: 387 PARAPRPSPDLPAPLDACPWAPPVYAPPAAPGPYAAWTSSRPARPAPLSHPTARAFQVPR 446
PA A P P+P P +PP+ +P A P P A + AP S P + Q P
Sbjct: 359 PALALPPLQAPPSP----PASPPL-SPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPF 413
Query: 447 RPGHAARRQFSVKMPETFNPQL 468
P + S P P L
Sbjct: 414 SPPASPPVSPSATPPSQAPPSL 435
Score = 53.1 bits (126), Expect = 6e-07
Identities = 70/307 (22%), Positives = 98/307 (31%), Gaps = 17/307 (5%)
Query: 159 ARLGLERAHSPRARRTVTRALTELLKQPGPQEPLPPT--LGPPLGGCVQVQMGDGLPRGS 216
AR G +PRA ++ + L+ P + PP P LG + P
Sbjct: 244 ARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAP 303
Query: 217 PHNSAGPRTPRLAR--ASPPGEPFMRVAPPGLAAAAAARDSEP------GPVPGAGGCGE 268
P SA P L A+PP + + P L A + S P P
Sbjct: 304 PSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALAL 363
Query: 269 DRLGSQPRPENGPPGSHRTASGRGLRRGDSEGGVNRGIGPSRVSLLAPDKKRLNNAPRGS 328
L + P P PP S + + P + + P
Sbjct: 364 PPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSP 423
Query: 329 AAPGPPRGPRLQGGGSLTLQPDYAKYATFKAAALKAAEAAPRDFCQRFPALEPSPRQPPA 388
+A P + P L + P +A +A P +P P+ PPA
Sbjct: 424 SATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPA 483
Query: 389 RAPRPSPDLPAPLDACPWAPPV-------YAPPAAPGPYAAWTSSRPARPAPLSHPTARA 441
A P LP+P + P P +P A P P A + P P S P +
Sbjct: 484 LATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPT 543
Query: 442 FQVPRRP 448
Q PRRP
Sbjct: 544 LQAPRRP 550
Score = 52.0 bits (123), Expect = 1e-06
Identities = 118/497 (23%), Positives = 162/497 (32%), Gaps = 61/497 (12%)
Query: 4 AGARGLL-----GGRRPPGLRLALALRLALLLARPPSGRAGAPEAQGPAAPGTTAPEGGD 58
A A GLL G RPP ALR+ L A GR E G G T PE
Sbjct: 19 ARAPGLLTPRPPGSPRPPPPVTPAALRV--LGAAGAVGRKPLAERAGGIG-GATIPESAP 75
Query: 59 RC------RGYYDVMGQWDPPF-NCSSGAYSFCCGTCGYRFCCHDGPRRLDQSRCSNYDT 111
R R G+ PP N S G S G GP R S +T
Sbjct: 76 RAGPTRTSRPPASGRGERAPPAKNTSPGPVSSPGRASG---TTRPGPLGQKGLRISAEET 132
Query: 112 PAWVQTGRPPARA-------RDTAAPRDPGRERSHTAVYAVCGVAALLVLAGIGARLGLE 164
A + P R+ RDT+ P + G L AR
Sbjct: 133 VARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSAR---P 189
Query: 165 RAHSPRARRTVTRALTELLKQPGPQEPLPPTLGPPLGGCVQVQMGDGLP----------- 213
R + R++V+ A +P P P+ G L +
Sbjct: 190 RPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPS 249
Query: 214 -RGSPHNSAGPRTPR----LARASPPGEPFMRVAPPGLAAAAAARDSEPGPVPGAGGCGE 268
RG+P A P P+ A P P + A P L +++ + P P
Sbjct: 250 ARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAPPSPSAP 309
Query: 269 DRLGSQPRPENGPPGSHRTASGRGLRRGDSEGGVNRGIGPSRVSLLAPDKKRLNNAPRGS 328
L + P P PP T+ G + + + P ++ P P
Sbjct: 310 PSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSP--LATPPPQAPPALALPPLQ 367
Query: 329 AAPGPPRGPRL--------QGGGSLTLQPDYAKYATFKAAALKAAEAAPRDFCQRFPALE 380
A P PP P L Q +L + A ++ + ++A + P P+
Sbjct: 368 APPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPAS-PPVSPSAT 426
Query: 381 PSPRQPPARAPRPSPDLPAPLDACPWAPPVYAPPAAPGPYAA----WTSSRPARPAPLSH 436
P + PP+ A P P+P + P +P PP AP P AA P P L+
Sbjct: 427 PPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALAT 486
Query: 437 PTARAFQVPRR--PGHA 451
P +A P PG A
Sbjct: 487 PPLQALPSPPASFPGQA 503
Score = 48.5 bits (114), Expect = 1e-05
Identities = 73/266 (27%), Positives = 95/266 (35%), Gaps = 31/266 (11%)
Query: 210 DGLPRGSPHNSAGPRTPRLARASPPGEPFMRVAPPGLAAA-----AAARDSEPGPVPGAG 264
D G+ + R P L PPG P R PP AA AA AG
Sbjct: 6 DKAKAGAAARTPAARAPGLLTPRPPGSP--RPPPPVTPAALRVLGAAGAVGRKPLAERAG 63
Query: 265 GCGEDRLGSQPRPENGPPGSHR-TASGRGLR----RGDSEGGVN---RGIGPSRVSLLAP 316
G G + + P GP + R ASGRG R + S G V+ R G +R L
Sbjct: 64 GIGGATI-PESAPRAGPTRTSRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQ 122
Query: 317 DKKRLN---NAPRGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAAALKAAEAAPRDFC 373
R++ RG A P R G T P T A + + AA +
Sbjct: 123 KGLRISAEETVARGKATEAPKRSALSAGARRDTSGP---TPGTPSPAMARRSRAAGTEVG 179
Query: 374 QRFPALEPSPRQPPARAPRPSPDLPAPLDACPWAPPVYAPPAA------PGPYAAWTSSR 427
PA PR PP PR S + +P P+A P + +S+
Sbjct: 180 LPRPAPSARPR-PPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSAT 238
Query: 428 PARPAPLSHPTARAFQVPRRPGHAAR 453
P S P+AR PR P H ++
Sbjct: 239 PLSSPARSGPSARG--TPRAPAHPSQ 262
Score = 44.3 bits (103), Expect = 3e-04
Identities = 68/263 (25%), Positives = 89/263 (33%), Gaps = 29/263 (11%)
Query: 183 LKQPGPQEPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGP--RTPRLARASPPGEPFMR 240
L P Q P P PP+ P +P A P P L A PP +
Sbjct: 435 LAAPPLQVPPSPPASPPMS-----------PSATPPPQAPPPLAAPPLQLAKPPPQAPPA 483
Query: 241 VAPPGLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEG 300
+A P L A + S PG P + P PP + L+ S
Sbjct: 484 LATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPP----VLAAPLLQVPPSPP 539
Query: 301 GVNRGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAKY---ATF 357
P R PD + APGPP P +L+ PD A + AT
Sbjct: 540 ASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLS-GPDLAGHSSSATS 598
Query: 358 KAAALKAAEAAPRDFCQRFPA--LEPSPRQPPARAPRPSPDLP---APLDACPWAPPVYA 412
L+ ++ P P E + P A + P+P L AP PW PP
Sbjct: 599 TPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPW-PPATG 657
Query: 413 PPAAPGPYAAWTSSRP--ARPAP 433
P +A G + + P A PAP
Sbjct: 658 PGSADGLCTIYETEGPESATPAP 680
Score = 32.0 bits (71), Expect = 1.3
Identities = 62/274 (22%), Positives = 79/274 (28%), Gaps = 31/274 (11%)
Query: 188 PQEPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGP-RTPRLARASPPGEPFMRV---AP 243
P PL P PP P+ P + P + P ASPP P AP
Sbjct: 343 PSPPLSPLATPP-------------PQAPPALALPPLQAPPSPPASPPLSPLATPSPQAP 389
Query: 244 PGLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEGGVN 303
LA P P P P PP + + +
Sbjct: 390 NALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPAS 449
Query: 304 RGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAAALK 363
+ PS P AP A PP+ P L P + A+F A
Sbjct: 450 PPMSPSATP--PPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALP--SPPASFPGQA-- 503
Query: 364 AAEAAPRDFCQRFPALEPSPRQPPARAPR-----PSPDLPAPLDACPWAPPVYAPPAAPG 418
+P P P P+ PP A PSP L A P PP P +
Sbjct: 504 --PFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQA-PRRPPTPGPDTSVS 560
Query: 419 PYAAWTSSRPARPAPLSHPTARAFQVPRRPGHAA 452
+ P P P S + P GH++
Sbjct: 561 GPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSS 594
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 57.0 bits (136), Expect = 4e-08
Identities = 93/340 (27%), Positives = 122/340 (35%), Gaps = 61/340 (17%)
Query: 135 RERSHTAVYAVCGVAALLVLAGIGARLGLERAHSPRARRTVTRALTELLKQPGPQEPLPP 194
+E +H ++ + V L++ G LG S R RR + L LL P P+ P
Sbjct: 541 KEETHRRLHDL--VLPLVMGVQQGEVLGSSPYTSSRCRRELYCLLLALLLAPSPRCP--- 595
Query: 195 TLGPPLGGCVQV----QMGDGL------------------PRGSPHNSAGPRTPRLARAS 232
PPL +Q Q D L PR P GP P A
Sbjct: 596 ---PPLACALQAFSLGQREDSLEVSSFCSEALVTCAALTHPRVPPLQPMGPTCPTPAPVP 652
Query: 233 PPGEPFMRVAPPGLAAAAAARDSEPGPVPGAGGCGE--DRLGSQPRPENGP-----PGSH 285
PP P APP PGP+P G + P P GP PG
Sbjct: 653 PPEAPSPFRAPPF---------HPPGPMPSVGSMPSAGPMPSAGPMPSAGPVPSARPGPP 703
Query: 286 RTASGRGLRRGDSEGGVNRGIGPSRVSLLAPDKKRLNNAPRGSAAPG---PPRGPRLQGG 342
TA+ GL G V+ P R+ L P+ R + AP PP P +
Sbjct: 704 TTANHLGL---SVPGLVSV---PPRL-LPGPENHRAGSNEDPILAPSGTPPPTIPPDETF 756
Query: 343 GSLTLQPDYAKYATFKAAALKAA-EAAPRDFCQRFP-ALEPSPRQPPARAPRPSPDLPAP 400
G +P + Y +A+ ++ + E+ D P L P P PP+ A P P
Sbjct: 757 GGRVPRPAFVHYDKEEASDVEISLESDSDDSVVIVPEGLPPLPPPPPSGATPPPIAPTGP 816
Query: 401 LDACPWAPPVYAP---PAAPGPYAAWTSSRPARPAPLSHP 437
A P P P PAAPGP P P P++ P
Sbjct: 817 PTASPPVPAKEEPEELPAAPGPLPPPPPPPPPVPGPVTLP 856
Score = 43.5 bits (101), Expect = 4e-04
Identities = 39/118 (33%), Positives = 50/118 (42%), Gaps = 13/118 (11%)
Query: 333 PPRGPRLQGGGSLTLQPDYAKYATFKAAALKAAEAAPRDFCQRFPALEPSPRQPPARAPR 392
PP LQ SL + D + ++F + AL A R P L+P P AP
Sbjct: 596 PPLACALQAF-SLGQREDSLEVSSFCSEALVTCAALTHP---RVPPLQPMGPTCPTPAPV 651
Query: 393 PSPDLPAPLDACPWAPPVYAPPAAPGPYAAWTSSRPARPAPLSHPTARAFQVP-RRPG 449
P P+ P+P A P+ P PGP + S A P P + P A VP RPG
Sbjct: 652 PPPEAPSPFRAPPFHP--------PGPMPSVGSMPSAGPMPSAGPMPSAGPVPSARPG 701
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 55.8 bits (133), Expect = 9e-08
Identities = 105/395 (26%), Positives = 130/395 (32%), Gaps = 88/395 (22%)
Query: 120 PPARARDTAAPRDPGRERSHTAVYAVCGVAALLVLAGIGARLGLERAHSPRARRTVTRAL 179
P ARA PR PG R V AAL VL GA +G + + RA +
Sbjct: 17 PAARAPGLLTPRPPGSPRPPPPVTP----AALRVLGAAGA-VG-RKPLAERAGGIGGATI 70
Query: 180 TELLKQPGPQEPLP-----PTLGPPLGGCVQVQMGDGLPRGSPHNSAGP-----RTPRLA 229
E + GP P PP G G+ P + S GP R
Sbjct: 71 PESAPRAGPTRSAGTSSRNPASRPPASG-----RGERAPPAK-NTSPGPVSSPGRASGTT 124
Query: 230 RASPPGEPFMRV-------------APPGLAAAAAARDSEPGPVPG------------AG 264
R P G+ +R+ AP A +A AR GP PG AG
Sbjct: 125 RPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAG 184
Query: 265 ---GCGEDRLGSQPRPEN-GPPGSHRTASGRGL-------RRGDSEGG-----VNRGIGP 308
G ++PRP GP S +AS RR S GG +R +
Sbjct: 185 TEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSS 244
Query: 309 SRVSLLAPDKK--RLNNAPRGSAAPGPPRGPRLQGGGSLTLQP------------DYAKY 354
S L +P + PR A P P+ LQ + P +
Sbjct: 245 SATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPL 304
Query: 355 ATFKAAALKAAEAAPRDFCQRFPALEPSPRQPPARAPRP----SPDLPAPLDACPWAPPV 410
AT + KA P D P P PP P P SP P L P
Sbjct: 305 ATPSPSGTKARPVPPPDNAAT-PLPATLPPSPPLATPLPLAPPSPSAPPSLQTLP----- 358
Query: 411 YAPPAAPGPYAAWTSSRPARPAPLSHPTARAFQVP 445
+PPA P A + + P AP S T QVP
Sbjct: 359 -SPPATPPSQAPPSMTTPPMQAPPSLQTIPPIQVP 392
Score = 52.4 bits (124), Expect = 9e-07
Identities = 71/280 (25%), Positives = 88/280 (31%), Gaps = 28/280 (10%)
Query: 186 PGPQEPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPRT---PRLARASPPGEPFMRV- 241
P PQ P P PPL G + P +P A P P A SPP P +
Sbjct: 590 PPPQAP-PALASPPLQGLPSPPLS---PLATPPPQAPPXLALPPLQAPPSPPASPPLSPL 645
Query: 242 ------APPGLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRR 295
AP LA P P P P PP + +
Sbjct: 646 ATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQ 705
Query: 296 GDSEGGVNRGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAKYA 355
+ + PS P AP P PP P + S T P +
Sbjct: 706 VPPSPPASPPMSPSATP--PPQAPPPLAAPPLQVPPSPPASPPMSP--SATPPP---RVP 758
Query: 356 TFKAAALKAAEAAPRDFCQRFPALEPSPRQPPARAPRPSPDLPAPLDACPWAPPV----- 410
AA +P P +P P+ PPA A P LP+P + P P
Sbjct: 759 PLLAAPPLQVPPSPPASLPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSAS 818
Query: 411 --YAPPAAPGPYAAWTSSRPARPAPLSHPTARAFQVPRRP 448
+P A P P A + P P S P + Q PRRP
Sbjct: 819 LPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRP 858
Score = 49.7 bits (117), Expect = 6e-06
Identities = 89/313 (28%), Positives = 112/313 (35%), Gaps = 45/313 (14%)
Query: 144 AVCGVAALLVLAGIGARLGLERAHSPRARRTVTRALTELLKQPGPQEPLPPTLGPPLGGC 203
A G AA A L SPR VT A +L G P L GG
Sbjct: 8 AKAGAAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKP--LAERAGGI 65
Query: 204 VQVQMGDGLPRGSPHNSAGPRTPRLARASPPGEPFMRVAPPGLAAAAAARDSEPGPVPGA 263
+ + PR P SAG + R + PP APP A+++ PGPV
Sbjct: 66 GGATIPESAPRAGPTRSAGTSS-RNPASRPPASGRGERAPP-------AKNTSPGPVSSP 117
Query: 264 GGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEGGVNRGIG---PSRVSLLAPDKKR 320
G R RP GP G +GLR +E V RG P R +L A ++
Sbjct: 118 G-----RASGTTRP--GPLGQ------KGLRIS-AEETVARGKATEAPKRSALSAGARRD 163
Query: 321 LNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAAALKAAEAAPRDFCQRFPALE 380
+ G+ +P R R G +P +A + PR A E
Sbjct: 164 TSGPTPGTPSPAMARRSRAAGTEVGLPRPA-------PSARPRPPTEGPRKSVSS--ASE 214
Query: 381 PSPRQP-PARAPRPSP----DLPAPLDACPWAPPVYAPPAAPGPYAAWTSSRPARPAPLS 435
S +P PA RPS PA A P+ + PA GP A T PA P S
Sbjct: 215 HSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPL-SSPARSGPSARGTPRAPAHP---S 270
Query: 436 HPTARAFQVPRRP 448
P + Q R P
Sbjct: 271 QPKPKGLQALRPP 283
Score = 46.2 bits (108), Expect = 7e-05
Identities = 78/324 (24%), Positives = 114/324 (35%), Gaps = 51/324 (15%)
Query: 149 AALLVLAGIGARLGLERAHSPRARRTVTRALTEL--LKQPGPQEPLPPTLGPPLGGCVQV 206
A L + A + L A SP + L L L PQ PL + PPL
Sbjct: 459 APLSLPASPPLQTSLSPAVSPLSSPLTIHPLQALSSLASHSPQAPLSSLIMPPL------ 512
Query: 207 QMGDGLPRGSPHNSAGP---RTPRLARASPPGEPFMRVAPPGLAAAAAAR-----DSEPG 258
+S P +TP + +PP E +APP L A+A ++ P
Sbjct: 513 ---------ETQSSLAPPSLQTPPASLTTPPLENLPSLAPPPLQTASAPLTTPHLETPPC 563
Query: 259 PVPGAGGCGEDRLGSQPRPENGPPGSHRTASGR-------GLRRGDSEGGVNRGIGPSRV 311
P P L + P P PP ++ L +G + + P +
Sbjct: 564 PAPCP-------LQAPPSPLTTPPPETPSSIATPPPQAPPALASPPLQGLPSPPLSP--L 614
Query: 312 SLLAPDKKRLNNAPRGSAAPGPPRGPRL--------QGGGSLTLQPDYAKYATFKAAALK 363
+ P P A P PP P L Q +L + A ++ + ++
Sbjct: 615 ATPPPQAPPXLALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQ 674
Query: 364 AAEAAPRDFCQRFPALEPSPRQPPARAPRPSPDLPAPLDACPWAPPVYAPPAAPGPYAAW 423
A + P P+ P + PP+ A P P+P + P +P PP AP P AA
Sbjct: 675 APFSPPAS-PPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAP 733
Query: 424 TSSRPARPAPLSHPTARAFQVPRR 447
P P P S P + + P R
Sbjct: 734 PLQVPPSP-PASPPMSPSATPPPR 756
Score = 43.5 bits (101), Expect = 4e-04
Identities = 73/287 (25%), Positives = 90/287 (31%), Gaps = 41/287 (14%)
Query: 183 LKQPGPQEP----LPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPRTPRL-------ARA 231
L P PQ P LPP PP P SP + P+ P A
Sbjct: 614 LATPPPQAPPXLALPPLQAPP--------SPPASPPLSPLATPSPQAPNALAVHLLQAPF 665
Query: 232 SPPGEPFMRVAPPGLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGR 291
SPP P ++ AP A+ S P L P P PP S
Sbjct: 666 SPPPSPPVQ-APFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATP-- 722
Query: 292 GLRRGDSEGGVNRGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDY 351
+ P +V P + P +A PPR P L L + P
Sbjct: 723 -----PPQAPPPLAAPPLQVPPSPPA-----SPPMSPSATPPPRVPPLLAAPPLQVPPSP 772
Query: 352 AKYATFKAAALKAAEAAPRDFCQRFPALEPSPRQPPARAP-RPSPDLP-APLDACP-WAP 408
A +A P AL P P +AP PS LP +PL P AP
Sbjct: 773 PASLPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAP 832
Query: 409 PVYA------PPAAPGPYAAWTSSRPARPAPLSHPTARAFQVPRRPG 449
PV A PP+ P RP P P + + + PG
Sbjct: 833 PVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPG 879
Score = 39.7 bits (91), Expect = 0.006
Identities = 67/291 (23%), Positives = 90/291 (30%), Gaps = 43/291 (14%)
Query: 168 SPRARRTVTRALTELLKQPGPQEPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPRTPR 227
SP+A + L + P P P+ PP V P +P + A P
Sbjct: 649 SPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVS-------PSATPPSQAPPSLAA 701
Query: 228 LARASPPGEPFMRVAPPGLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHRT 287
PP P A P ++ +A P P+ L P P PP S
Sbjct: 702 PPLQVPPSPP----ASPPMSPSATPPPQAPPPLAAPP------LQVPPSPPASPPMSPSA 751
Query: 288 ASGRGLRRGDSEGGVNRGIGPSRVS-LLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLT 346
P RV LLA ++ +P S P P Q +L
Sbjct: 752 TP------------------PPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAPPALA 793
Query: 347 LQPDYAKYATFKAAALKAAEAAPRDFCQRFPALEPSPRQPPARAPR-----PSPDLPAPL 401
P A + A+ A +P P P P+ PP A PSP L
Sbjct: 794 TPPLQALPSP-PASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTL 852
Query: 402 DACPWAPPVYAPPAAPGPYAAWTSSRPARPAPLSHPTARAFQVPRRPGHAA 452
A P PP P + + P P P S + P GH++
Sbjct: 853 QA-PRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSS 902
Score = 35.0 bits (79), Expect = 0.16
Identities = 38/140 (27%), Positives = 51/140 (36%), Gaps = 11/140 (7%)
Query: 329 AAPGPPRGPRLQGGGSLTLQPDYAKYATFKAAALKAAEAAPRDFCQRFPALEPSPRQPPA 388
A P P P + S+ P A A + L+ + P P P P+ PP
Sbjct: 571 APPSPLTTPPPETPSSIATPPPQAPPA-LASPPLQGLPSPPLS-----PLATPPPQAPPX 624
Query: 389 RAPRPSPDLPAPLDACPWAPPVYAPPAAPGPYAAWTSSRPARPAPLSHPTARAFQVPRRP 448
A P P+P P +PP+ +P A P P A + AP S P + Q P P
Sbjct: 625 LALPPLQAPPSP----PASPPL-SPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSP 679
Query: 449 GHAARRQFSVKMPETFNPQL 468
+ S P P L
Sbjct: 680 PASPPVSPSATPPSQAPPSL 699
Score = 30.8 bits (68), Expect = 2.9
Identities = 35/125 (28%), Positives = 46/125 (36%), Gaps = 21/125 (16%)
Query: 188 PQEPL--PPTLGPPLGGCVQVQMGDGLPRGSPHNSA-------GPRT----PRLARASPP 234
P PL PP PP+ +Q+ P SP A GP T PRL A P
Sbjct: 820 PMSPLATPPPQAPPVLAAPLLQVPPS-PPASPTLQAPRRPPTPGPDTSVSGPRLTLALAP 878
Query: 235 G-------EPFMRVAPPGLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHRT 287
G P ++ P LA +++ S P + G E + P P+ H
Sbjct: 879 GPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPA 938
Query: 288 ASGRG 292
A RG
Sbjct: 939 AWSRG 943
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 55.1 bits (131), Expect = 1e-07
Identities = 75/314 (23%), Positives = 101/314 (32%), Gaps = 27/314 (8%)
Query: 162 GLERAHSPRA---RRTVTRALTEL----LKQPGP----QEPLPPTL-GPPLGGCVQVQMG 209
GL+ P+ R+ AL L L P P Q PPTL P + Q+
Sbjct: 276 GLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAALQSQAPPTLPATPHSSSLTCQLA 335
Query: 210 DGLPRGSPHNSAGPRTPRLAR--ASPPGEPFMRVAPPGLAAAAAARDSEP------GPVP 261
LP P SA P L A+PP + + P L A + S P P
Sbjct: 336 TPLPLAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQ 395
Query: 262 GAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEGGVNRGIGPSRVSLLAPDKKRL 321
L + P P PP S + + P +
Sbjct: 396 APPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPP 455
Query: 322 NNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAAALKAAEAAPRDFCQRFPALEP 381
+ P +A P + P L + P +A +A P +P
Sbjct: 456 ASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKP 515
Query: 382 SPRQPPARAPRPSPDLPAPLDACPWAPPV-------YAPPAAPGPYAAWTSSRPARPAPL 434
P+ PPA A P LP+P + P P +P A P P A + P P
Sbjct: 516 PPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPP 575
Query: 435 SHPTARAFQVPRRP 448
S P + Q PRRP
Sbjct: 576 SPPASPTLQAPRRP 589
Score = 50.8 bits (120), Expect = 3e-06
Identities = 110/423 (26%), Positives = 139/423 (32%), Gaps = 113/423 (26%)
Query: 120 PPARARDTAAPRDPGRERSHTAVYAVCGVAALLVLAGIGARLGLERAHSPRARRTVTRAL 179
P ARA PR PG R V AAL VL GA +G + + RA +
Sbjct: 17 PAARAPGLLTPRPPGSPRPPPPVTP----AALRVLGAAGA-VG-RKPLAERAGGIGGATI 70
Query: 180 TELLKQPGPQEPLP-----PTLGPPLGGCVQVQMGDGLPRGSPHNSAGP-----RTPRLA 229
E + GP P PP G G+ P + S GP R
Sbjct: 71 PESAPRAGPTRSAGTSSRNPASRPPASG-----RGERAPPAK-NTSPGPVSSPGRASGTT 124
Query: 230 RASPPGEPFMRV-------------APPGLAAAAAARDSEPGPVPG------------AG 264
R P G+ +R+ AP A +A AR GP PG AG
Sbjct: 125 RPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAG 184
Query: 265 ---GCGEDRLGSQPR-PENGPPGSHRTAS-------GRGLRRGDSEGG-----VNRGIGP 308
G ++PR P GP S +AS RR S GG +R +
Sbjct: 185 TEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSS 244
Query: 309 SRVSLLAPDKK--RLNNAPRGSAAPG----------------PPRGPRLQGGGSLTLQP- 349
S L +P + PR A P PPR G L+ P
Sbjct: 245 SATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPL 304
Query: 350 -DYAKYATFKAAALKAAEAAPRD---FCQ---RFPALEPSPRQPPARAPRPSPD------ 396
+ A ++ A A P CQ P PSP PP+ PSP
Sbjct: 305 ATPSPSAALQSQAPPTLPATPHSSSLTCQLATPLPLAPPSPSAPPSLQTLPSPPATPPSQ 364
Query: 397 ----------------LPAPLDACPWAPPVYAPPAAPGPYAAWTSSRPARP--APLSHPT 438
LP+P + PP APPA P S PA P +PL+ P+
Sbjct: 365 ATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPS 424
Query: 439 ARA 441
+A
Sbjct: 425 PQA 427
Score = 47.8 bits (112), Expect = 2e-05
Identities = 74/275 (26%), Positives = 95/275 (34%), Gaps = 40/275 (14%)
Query: 210 DGLPRGSPHNSAGPRTPRLARASPPGEPFMRVAPPGLAAA-----AAARDSEPGPVPGAG 264
D G+ + R P L PPG P R PP AA AA AG
Sbjct: 6 DKAKAGAAARTPAARAPGLLTPRPPGSP--RPPPPVTPAALRVLGAAGAVGRKPLAERAG 63
Query: 265 GCGEDRLGSQPRPENGP----------PGSHRTASGRGLR----RGDSEGGVN---RGIG 307
G G + + P GP P S ASGRG R + S G V+ R G
Sbjct: 64 GIGGATI-PESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASG 122
Query: 308 PSRVSLLAPDKKRLN---NAPRGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAAALKA 364
+R L R++ RG A P R G T P T A +
Sbjct: 123 TTRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGP---TPGTPSPAMARR 179
Query: 365 AEAAPRDFCQRFPALEPSPRQPPARAPRPSPDLPAPLDACPWAPPVYAPPAA------PG 418
+ AA + PA PR PP PR S + +P P+A P
Sbjct: 180 SRAAGTEVGLPRPAPSARPR-PPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPA 238
Query: 419 PYAAWTSSRPARPAPLSHPTARAFQVPRRPGHAAR 453
+ +S+ P S P+AR PR P H ++
Sbjct: 239 SRSLSSSATPLSSPARSGPSARG--TPRAPAHPSQ 271
Score = 46.6 bits (109), Expect = 5e-05
Identities = 74/312 (23%), Positives = 106/312 (33%), Gaps = 41/312 (13%)
Query: 159 ARLGLERAHSPRARRTVTRALTELLKQPGPQEPLPPTLGPPLGGCVQVQMGDGLPRGSPH 218
AR G +PRA ++ K G Q PP + PP D P P
Sbjct: 253 ARSGPSARGTPRAPAHPSQP-----KPKGLQALRPPQVTPP--------RKDAAPALGPL 299
Query: 219 NSAGPRTPRLARASPPGEPFMRVAPPGLAAAAAARD-----SEPGPVPGAGGCGEDRLGS 273
+S+ TP P APP L A + + P P+ L +
Sbjct: 300 SSSPLATPS------PSAALQSQAPPTLPATPHSSSLTCQLATPLPLAPPSPSAPPSLQT 353
Query: 274 QPRPENGPPGSHRTASGRGLRRGDSEGGVNRGIGPSRVSLLAPDKKRLNNAPRGSAAPGP 333
P P PP T+ G + + + P ++ P P A P P
Sbjct: 354 LPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSP--LATPPPQAPPALALPPLQAPPSP 411
Query: 334 PRGPRL--------QGGGSLTLQPDYAKYATFKAAALKAAEAAPRDFCQRFPALEPSPRQ 385
P P L Q +L + A ++ + ++A + P P+ P +
Sbjct: 412 PASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPAS-PPVSPSATPPSQA 470
Query: 386 PPARAPRPSPDLPAPLDACPWAPPVYAPPAAPGPYAA----WTSSRPARPAPLSHPTARA 441
PP+ A P P+P + P +P PP AP P AA P P L+ P +A
Sbjct: 471 PPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQA 530
Query: 442 FQVPRR--PGHA 451
P PG A
Sbjct: 531 LPSPPASFPGQA 542
Score = 45.8 bits (107), Expect = 9e-05
Identities = 83/331 (25%), Positives = 108/331 (32%), Gaps = 59/331 (17%)
Query: 168 SPRARRTVTRALTEL-LKQPGPQ-EPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPRT 225
SP R A TE+ L +P P P PPT GP + S H++ P +
Sbjct: 173 SPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPR----------KSVSSASEHSTTEP-S 221
Query: 226 PRLARASPPGEPFMRVAPPGLAAAAAARDSEPGPVPGAGGCGEDRLG-SQPRPEN----- 279
P R G R A L+++A S P A G SQP+P+
Sbjct: 222 PAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALR 281
Query: 280 ---------------GPPGSHRTASGRGLRRGDSEGGVNRGIGPSRVSLLAPDKKRLNNA 324
GP S A+ S+ P SL L A
Sbjct: 282 PPQVTPPRKDAAPALGPLSSSPLATPSPSAALQSQAPPTLPATPHSSSLTCQLATPLPLA 341
Query: 325 PRGSAAP-------GPPRGPRLQGGGSLTLQPDYAKYATFKAAALKAAEAAPRDFCQRFP 377
P +AP PP P Q SL A ++ + L P
Sbjct: 342 PPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLS-------------P 388
Query: 378 ALEPSPRQPPARAPRPSPDLPAPLDACPWAPPVYAPPAAPGPYAAWTSSRPARPAPLSHP 437
P P+ PPA A P P+P P +PP+ +P A P P A + AP S P
Sbjct: 389 LATPPPQAPPALALPPLQAPPSP----PASPPL-SPLATPSPQAPNALAVHLLQAPFSPP 443
Query: 438 TARAFQVPRRPGHAARRQFSVKMPETFNPQL 468
+ Q P P + S P P L
Sbjct: 444 PSPPVQAPFSPPASPPVSPSATPPSQAPPSL 474
Score = 44.3 bits (103), Expect = 3e-04
Identities = 68/263 (25%), Positives = 89/263 (33%), Gaps = 29/263 (11%)
Query: 183 LKQPGPQEPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGP--RTPRLARASPPGEPFMR 240
L P Q P P PP+ P +P A P P L A PP +
Sbjct: 474 LAAPPLQVPPSPPASPPMS-----------PSATPPPQAPPPLAAPPLQLAKPPPQAPPA 522
Query: 241 VAPPGLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEG 300
+A P L A + S PG P + P PP + L+ S
Sbjct: 523 LATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPP----VLAAPLLQVPPSPP 578
Query: 301 GVNRGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAKY---ATF 357
P R PD + APGPP P +L+ PD A + AT
Sbjct: 579 ASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLS-GPDLAGHSSSATS 637
Query: 358 KAAALKAAEAAPRDFCQRFPA--LEPSPRQPPARAPRPSPDLP---APLDACPWAPPVYA 412
L+ ++ P P E + P A + P+P L AP PW PP
Sbjct: 638 TPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPW-PPATG 696
Query: 413 PPAAPGPYAAWTSSRP--ARPAP 433
P +A G + + P A PAP
Sbjct: 697 PGSADGLCTIYETEGPESATPAP 719
>gi|56090523 shisa homolog 2 [Homo sapiens]
Length = 295
Score = 54.7 bits (130), Expect = 2e-07
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 53 APEGGDRCRGYYDVMGQWDPPFNC----SSGAYSFCCGTCGYRFCCHDGPRRLDQSRCSN 108
A G+ C G+ D G W F C G + CCG+C R+CC RLDQ C N
Sbjct: 31 ARASGEYCHGWLDAQGVWRIGFQCPERFDGGDATICCGSCALRYCCSSAEARLDQGGCDN 90
Query: 109 YDTPAWVQTGRPPARARDTAA 129
+ GR D +A
Sbjct: 91 DRQQGAGEPGRADKDGPDGSA 111
>gi|39930575 shisa homolog 4 [Homo sapiens]
Length = 197
Score = 54.3 bits (129), Expect = 2e-07
Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 33 PPSG--RAGAPEAQGPAAPGTTAPEGGDRCRGYYDVMGQWDPPFNCSSGAYSFCCGTCGY 90
PP+G RA A G G+ C Y D G W P FNC ++FCCGTC +
Sbjct: 2 PPAGLRRAAPLTAIALLVLGAPLVLAGEDCLWYLDRNGSWHPGFNCEF--FTFCCGTCYH 59
Query: 91 RFCCHD 96
R+CC D
Sbjct: 60 RYCCRD 65
Score = 31.6 bits (70), Expect = 1.7
Identities = 22/52 (42%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 377 PALEPSPRQPPARAPRPSPDLPAPLDACPWAPPVYAPPAAPGPYAAWTSSRP 428
P P+P QP P P PL P PPVY P AAP PY S P
Sbjct: 147 PKAGPAPPQPGFMYPPSGPAPQYPL--YPAGPPVYNP-AAPPPYMPPQPSYP 195
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 54.3 bits (129), Expect = 2e-07
Identities = 68/261 (26%), Positives = 91/261 (34%), Gaps = 59/261 (22%)
Query: 188 PQEPLPPT---LGPPLGGCVQVQ--MGDGLPRGSPHNSAGPRTPRLARASPPGEPFMRVA 242
PQ P PP GPP G + Q G P+G P R+PR SPPG+P
Sbjct: 108 PQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPR----SPPGKP----- 158
Query: 243 PPGLAAAAAARDSEPGPVPGAGGCGEDRLGSQP-------RPENGPPGSHRTASGR---G 292
G + P P PG + G +P +P+ PP ++ S + G
Sbjct: 159 -QGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPG 217
Query: 293 LRRGDSEGGVNRGIGPSRVSLLAPDKKRL-----NNAPRGSAAPGPPRGPRLQGGGSLTL 347
+G G N+ GP P K + N P+G PG P+GP QGG
Sbjct: 218 KPQGPPPQGGNQPQGPPP----PPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGS---- 269
Query: 348 QPDYAKYATFKAAALKAAEAAPRDFCQRFPALEPSPRQPPARAPRPSPDLPAPLDACPWA 407
K+ + ++ P+ P Q P+ P P A
Sbjct: 270 ----------KSQSARSPPGKPQ-----------GPPQQEGNNPQGPPPPAGGNPQQPQA 308
Query: 408 PPVYAPPAAPGPYAAWTSSRP 428
PP P P P SRP
Sbjct: 309 PPAGQPQGPPRPPQGGRPSRP 329
Score = 53.9 bits (128), Expect = 3e-07
Identities = 83/312 (26%), Positives = 107/312 (34%), Gaps = 44/312 (14%)
Query: 184 KQPGPQEPLPPTLGPPLGGCVQVQ--MGDGLPRGSPHNSAGPRTPRLARASPPGEPFMRV 241
K GP P GPP G + Q G P+G P R+PR SPPG+P +
Sbjct: 46 KPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPR----SPPGKP--QG 99
Query: 242 APPGLAAAAAARDSEPGPVPGAGGCGEDRLGSQP---RPENGPPGSHRTASGR---GLRR 295
PP PG G G +R P +P+ PP ++ S R G +
Sbjct: 100 PPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQ 159
Query: 296 GDSEGGVNRGIGPSRVSLLAPDK-----KRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPD 350
G G N+ GP P K + P+G PG P+GP QG S + Q
Sbjct: 160 GPPPQGGNQPQGPPP----PPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSP 215
Query: 351 YAKYATFKAAALKAAEAAPRDFCQRFPALEPSPRQPPARAPR--PSPDLPAPLDACPWAP 408
K + P + P P +P P+ P P P P P
Sbjct: 216 PGK-----------PQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPP----PGKP 260
Query: 409 PVYAPPAAPGPYAAWTSSRPARPAPLSHPTARAFQVPRRPGHAARRQFSVKMPETFNPQL 468
PPA G + S P +P Q P P +Q + P PQ
Sbjct: 261 --QGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQ--PQAPPAGQPQG 316
Query: 469 PGLYGSAGRGSR 480
P GR SR
Sbjct: 317 PPRPPQGGRPSR 328
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 53.9 bits (128), Expect = 3e-07
Identities = 84/315 (26%), Positives = 101/315 (32%), Gaps = 50/315 (15%)
Query: 186 PGPQEPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPRTPRLARASPPGEPFMRVA--P 243
PGP P+ P P G V GLP T PPG+P A P
Sbjct: 1044 PGPPGPIGP---PGFPGAVG---SPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPGATGP 1097
Query: 244 PGLAA--------AAAARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRR 295
PGL +A EPGP PG+ G + PR E GP G+ +G +
Sbjct: 1098 PGLPGIKGERGYTGSAGEKGEPGP-PGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQG 1156
Query: 296 GDSEGGVNRGIG-PSRVSLLAPDKKRLNNAPRG-------SAAPGPPRGPRLQGGGSLTL 347
G G P +V P + G +PGPP P +QG L
Sbjct: 1157 QPGFPGPPGPPGFPGKVGSPGPPGPQAEKGSEGIRGPSGLPGSPGPPGPPGIQGPAGLD- 1215
Query: 348 QPDYAKYATFKAAALKAAEAAPRDFCQRFPALEPSPRQPPA-RAPRPSPDLPAPLDAC-- 404
L + P PA P PP + P LP P C
Sbjct: 1216 -------------GLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGK 1262
Query: 405 PWAPPVYAPPAAPG-PYAAWTSSRPARPAPLSHPTARAFQVPRRPGHAARRQFSVK--MP 461
P P P A G P A RP P + P P +PG A +K
Sbjct: 1263 PGPPGSTGRPGAEGEPGAMGPQGRPGPPGHVGPPGP-----PGQPGPAGISAVGLKGDRG 1317
Query: 462 ETFNPQLPGLYGSAG 476
T L GL G G
Sbjct: 1318 ATGERGLAGLPGQPG 1332
Score = 42.4 bits (98), Expect = 0.001
Identities = 85/332 (25%), Positives = 110/332 (33%), Gaps = 58/332 (17%)
Query: 185 QPGP--QEPLPPTLGPPLGGCVQVQMGDGLPRGS--PHNSAGPRTPRLARASP--PGEPF 238
+PGP E LP GPP G PRG P ++G + + + P PG P
Sbjct: 1118 EPGPPGSEGLP---GPP---------GPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPP- 1164
Query: 239 MRVAPPGLAAAAAARDSEPGPVPGAGG---CGEDRLGSQPRPENGPPGSHRTASGRGLRR 295
PPG + PGP G G L P P GPPG A GL
Sbjct: 1165 ---GPPGFPGKVGS-PGPPGPQAEKGSEGIRGPSGLPGSPGPP-GPPGIQGPAGLDGLDG 1219
Query: 296 GDSEGGVNRGIGPSRV-SLLAPD--KKRLNN----APRGSAA-PGPPRGPRLQGG----G 343
D + G+ GP+ L+ P K + + P+G PGPP G G
Sbjct: 1220 KDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSTGRPGAEGEPG 1279
Query: 344 SLTLQ--------------PDYAKYATFKAAALKAAEAAPRDFCQRFPALEPSPRQPPAR 389
++ Q P A A LK A + +P P P
Sbjct: 1280 AMGPQGRPGPPGHVGPPGPPGQPGPAGISAVGLKGDRGATGERGLAGLPGQPGPPGHPGP 1339
Query: 390 APRPSPDLPAPLDACPWAPPVYAPPAAPG-PYAAWTSSRPARPAPLSHP----TARAFQV 444
P D A + P Y PP G P AA + P + +
Sbjct: 1340 PGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMPGGPGKSGSMGP 1399
Query: 445 PRRPGHAARRQFSVKMPETFNPQLPGLYGSAG 476
PG A R + +P LPG+ GS G
Sbjct: 1400 VGPPGPAGERGHPGAPGPSGSPGLPGVPGSMG 1431
Score = 38.9 bits (89), Expect = 0.011
Identities = 69/274 (25%), Positives = 87/274 (31%), Gaps = 51/274 (18%)
Query: 186 PGPQ----EPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPRTP-RLARASPPGEPFMR 240
PGP EP PP G P + G +G N P TP R GEP ++
Sbjct: 652 PGPSGEKGEPGPPGFGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGTTGRPGLSGEPGVQ 711
Query: 241 -------------VAPPGLAAAA---AARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGS 284
A P L A R +PGP G G R G +P G PG
Sbjct: 712 GPAGPKGEKGDGCTACPSLQGTVTDMAGRPGQPGPKGEQGPEGVGRPGKPGQP--GLPGV 769
Query: 285 HRTASGRGLRRGDSEGGVNRGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGS 344
+G++ G RG+ + AP + P PGP QG
Sbjct: 770 QGPPGLKGVQ--GEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPG 827
Query: 345 LTLQPDYAKYATFKAAALKAAEAAP--RDFCQRFPALEPSPRQPPARAPR--------PS 394
+ K AT A+ + P RD Q L +P + R + PS
Sbjct: 828 V-------KGATGPVGPPGASVSGPPGRDGQQGQTGLRGTPGEKGPRGEKGEPGECSCPS 880
Query: 395 ---------PDLPAPLDACPWAPPVYAPPAAPGP 419
P P W P PP PGP
Sbjct: 881 QGDLIFSGMPGAPGLWMGSSWQPGPQGPPGIPGP 914
Score = 36.2 bits (82), Expect = 0.070
Identities = 74/311 (23%), Positives = 98/311 (31%), Gaps = 52/311 (16%)
Query: 207 QMGDGLPRGSPHNSAGPRTPR----LARASPPGEPFMRVAPPGLAAAAAARDSEPGP--V 260
+ GDG +G P P + G+P V P GLA EPGP +
Sbjct: 403 EKGDGGIKGVPGKPGRDGRPGEICVIGPKGQKGDPGF-VGPEGLAG-------EPGPPGL 454
Query: 261 PGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEGGVNRGIG-------PSRVSL 313
PG G G L P GPPG G+ + GG G P V
Sbjct: 455 PGPPGIG---LPGTPGDPGGPPGPKGDKGSSGIPGKEGPGGKPGKPGVKGEKGDPCEVCP 511
Query: 314 LAPDKKR----LNNAPRGSAAPGPP---RG-PRLQGGGSLTLQPDYAKYATFKAAALKAA 365
P+ + L P PG P RG P +QG +P + + A L ++
Sbjct: 512 TLPEGFQNFVGLPGKPGPKGEPGDPVPARGDPGIQGIKGEKGEPCLSCSSVVGAQHLVSS 571
Query: 366 EAAPRDFCQR------------FPALEPSPRQPPARAPRPSPDLPAPLDACPWAPPVYAP 413
A D P L+ P SP P P+
Sbjct: 572 TGASGDVGSPGFGLPGLPGRAGVPGLKGEKGNFGEAGPAGSPGPPGPVGPAG-IKGAKGE 630
Query: 414 PAAPGPYAAWTSSRPARPAPLSHPTAR-------AFQVPRRPGHAARRQFSVKMPETFNP 466
P P P + R L P+ F +P + G A R + + NP
Sbjct: 631 PCEPCPALSNLQDGDVRVVALPGPSGEKGEPGPPGFGLPGKQGKAGERGLKGQKGDAGNP 690
Query: 467 QLPGLYGSAGR 477
PG G+ GR
Sbjct: 691 GDPGTPGTTGR 701
Score = 33.1 bits (74), Expect = 0.59
Identities = 48/161 (29%), Positives = 57/161 (35%), Gaps = 25/161 (15%)
Query: 190 EPLPPTLG-------PPLGGCVQVQMGDGLPRGSPHNSAGPRTPRLARASPPGEPFMR-V 241
EP PP G P G +Q G PRG P GP + A+ SP + V
Sbjct: 781 EPGPPGRGVQGPQGEPGAPGLPGIQGLPG-PRGPP----GPTGEKGAQGSPGVKGATGPV 835
Query: 242 APPGLAAAAA-ARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEG 300
PPG + + RD + G G GE PR E G PG S L G
Sbjct: 836 GPPGASVSGPPGRDGQQGQTGLRGTPGE----KGPRGEKGEPGECSCPSQGDLIFSGMPG 891
Query: 301 GVNRGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQG 341
+G S + P PGPP P LQG
Sbjct: 892 APGLWMGSSW-------QPGPQGPPGIPGPPGPPGVPGLQG 925
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 52.8 bits (125), Expect = 7e-07
Identities = 74/289 (25%), Positives = 98/289 (33%), Gaps = 51/289 (17%)
Query: 168 SPRARRTVTRALTELLKQPGPQEPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPRTPR 227
+PR++ RA ++ GP P P L G + D P G + GPR
Sbjct: 771 TPRSQSFALRA-----RRKGPPPPPPKRLSSVSGPSPEPPPLDESP-GPKEGATGPRRRT 824
Query: 228 LARASPPGEPFMRVAPPGLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHRT 287
L+ + P EP PGP P G D +P PE PP R
Sbjct: 825 LSEPAGPSEP-------------------PGP-PAPAGPASDTEEEEPGPEGTPPS--RG 862
Query: 288 ASGRGLRRGDSEGGVN-----RGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGG 342
+SG GL + EG + + GP P N + P R
Sbjct: 863 SSGEGLPFAE-EGNLTIKQRPKPAGPPPRETPVPPGLDFNLTESDTVKRRPKCRER---- 917
Query: 343 GSLTLQPDYAKYATFKAAALKAAEAAPRDFCQRFPALEPSPRQPPARAPRPSP-DLPAPL 401
+P F A+ AAP P+ P P + P+P P LPA
Sbjct: 918 -----EPLQTALLAFGVASATPGPAAP------LPSPTPGESPPASSLPQPEPSSLPAQG 966
Query: 402 DACPWAP-PVYAPPAAPGPYAAWTSSRPARPAPLSHPTARAFQVPRRPG 449
P AP P PP P P SS +R + P A + + PG
Sbjct: 967 VPTPLAPSPAMQPPVPPCPGPGLESSAASRWNGETEPPAAPAALLKVPG 1015
Score = 44.7 bits (104), Expect = 2e-04
Identities = 73/276 (26%), Positives = 98/276 (35%), Gaps = 64/276 (23%)
Query: 184 KQPGPQEPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPRTPRLARASPPGE---PFMR 240
+QP PQ P GG LP G+ R P+L +S PG+ P++
Sbjct: 631 EQPAPQ---------PSGGDPSPPQERNLPEGTE------RPPKLC-SSLPGQGPPPYVF 674
Query: 241 VAPPGLAAAAAARDSEPGPVPGAGGCGEDRLG------SQPRPENGPPGSHRTASGRGLR 294
+ P G ++ A PGP PGA G PRP+ R G
Sbjct: 675 MYPQGSPSSPA-----PGPPPGAPWAFSYLAGPPATPPDPPRPKRRSHSLSRPGPTEGDA 729
Query: 295 RGDSEGGVNRGIGPSRVSLLAPDKKRL-NNAPRGSAAPGPPRG-PRLQGGGSLTLQPDYA 352
G++EG V +G P + L +P S P P RG PR Q
Sbjct: 730 EGEAEGPVGSTLGSYATLTRRPGRSALVRTSP--SVTPTPARGTPRSQ------------ 775
Query: 353 KYATFKAAALKAAEAAPRDFCQRFPALE-PSPRQPPA-RAPRPSPDLPAPL------DAC 404
+F A + P +R ++ PSP PP +P P P A
Sbjct: 776 ---SFALRARRKGPPPPPP--KRLSSVSGPSPEPPPLDESPGPKEGATGPRRRTLSEPAG 830
Query: 405 PWAPPVYAPPAAPGPYAAWTSSRPARPAPLSHPTAR 440
P PP PPA GP + + P P P +R
Sbjct: 831 PSEPP--GPPAPAGPA---SDTEEEEPGPEGTPPSR 861
Score = 32.3 bits (72), Expect = 1.0
Identities = 80/338 (23%), Positives = 104/338 (30%), Gaps = 86/338 (25%)
Query: 210 DGLPRGSPHNSAGPRTPRLARASPPGEPFMRVAPPGLAAAAAARDSEPGPVPGAGGCGED 269
+GL G +AGPR + P L AA A EP P+P A ++
Sbjct: 567 EGLENGEGPATAGPRLLTFQGSE---------LSPELQAAMAGGGPEPLPLPPARSPSQE 617
Query: 270 RLGSQ------------PRPENGPPGSHRTAS-GRGLRRGDSEGGVNRGIGPS------- 309
+G++ P+P G P + + G R G GP
Sbjct: 618 SIGARSRGSGHSQEQPAPQPSGGDPSPPQERNLPEGTERPPKLCSSLPGQGPPPYVFMYP 677
Query: 310 -----------------RVSLLA------PDKKRLNNAPRGSAAPGP-----------PR 335
S LA PD R + PGP P
Sbjct: 678 QGSPSSPAPGPPPGAPWAFSYLAGPPATPPDPPRPKRRSHSLSRPGPTEGDAEGEAEGPV 737
Query: 336 GPRLQGGGSLTLQPD-YAKYATFKAAALKAAEAAPRDFCQRFPALEPSPRQPPAR----A 390
G L +LT +P A T + A PR A P PP +
Sbjct: 738 GSTLGSYATLTRRPGRSALVRTSPSVTPTPARGTPRSQSFALRARRKGPPPPPPKRLSSV 797
Query: 391 PRPSPDLPAPLDACPWAPPVYAPPAAPGPYAAWTSSRPARPAPLSHPTARAFQVPRRPGH 450
PSP+ P PLD P A GP T S PA P+ P A A G
Sbjct: 798 SGPSPE-PPPLDESPG-----PKEGATGPRRR-TLSEPAGPSEPPGPPAPA-------GP 843
Query: 451 AARRQFSVKMPETFNPQLPGLYGSAGRGSRYLRTNSKT 488
A+ + PE P GS+G G + + T
Sbjct: 844 ASDTEEEEPGPEGTPPS----RGSSGEGLPFAEEGNLT 877
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 52.8 bits (125), Expect = 7e-07
Identities = 74/289 (25%), Positives = 98/289 (33%), Gaps = 51/289 (17%)
Query: 168 SPRARRTVTRALTELLKQPGPQEPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPRTPR 227
+PR++ RA ++ GP P P L G + D P G + GPR
Sbjct: 853 TPRSQSFALRA-----RRKGPPPPPPKRLSSVSGPSPEPPPLDESP-GPKEGATGPRRRT 906
Query: 228 LARASPPGEPFMRVAPPGLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHRT 287
L+ + P EP PGP P G D +P PE PP R
Sbjct: 907 LSEPAGPSEP-------------------PGP-PAPAGPASDTEEEEPGPEGTPPS--RG 944
Query: 288 ASGRGLRRGDSEGGVN-----RGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGG 342
+SG GL + EG + + GP P N + P R
Sbjct: 945 SSGEGLPFAE-EGNLTIKQRPKPAGPPPRETPVPPGLDFNLTESDTVKRRPKCRER---- 999
Query: 343 GSLTLQPDYAKYATFKAAALKAAEAAPRDFCQRFPALEPSPRQPPARAPRPSP-DLPAPL 401
+P F A+ AAP P+ P P + P+P P LPA
Sbjct: 1000 -----EPLQTALLAFGVASATPGPAAP------LPSPTPGESPPASSLPQPEPSSLPAQG 1048
Query: 402 DACPWAP-PVYAPPAAPGPYAAWTSSRPARPAPLSHPTARAFQVPRRPG 449
P AP P PP P P SS +R + P A + + PG
Sbjct: 1049 VPTPLAPSPAMQPPVPPCPGPGLESSAASRWNGETEPPAAPAALLKVPG 1097
Score = 44.7 bits (104), Expect = 2e-04
Identities = 73/276 (26%), Positives = 98/276 (35%), Gaps = 64/276 (23%)
Query: 184 KQPGPQEPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPRTPRLARASPPGE---PFMR 240
+QP PQ P GG LP G+ R P+L +S PG+ P++
Sbjct: 713 EQPAPQ---------PSGGDPSPPQERNLPEGTE------RPPKLC-SSLPGQGPPPYVF 756
Query: 241 VAPPGLAAAAAARDSEPGPVPGAGGCGEDRLG------SQPRPENGPPGSHRTASGRGLR 294
+ P G ++ A PGP PGA G PRP+ R G
Sbjct: 757 MYPQGSPSSPA-----PGPPPGAPWAFSYLAGPPATPPDPPRPKRRSHSLSRPGPTEGDA 811
Query: 295 RGDSEGGVNRGIGPSRVSLLAPDKKRL-NNAPRGSAAPGPPRG-PRLQGGGSLTLQPDYA 352
G++EG V +G P + L +P S P P RG PR Q
Sbjct: 812 EGEAEGPVGSTLGSYATLTRRPGRSALVRTSP--SVTPTPARGTPRSQ------------ 857
Query: 353 KYATFKAAALKAAEAAPRDFCQRFPALE-PSPRQPPA-RAPRPSPDLPAPL------DAC 404
+F A + P +R ++ PSP PP +P P P A
Sbjct: 858 ---SFALRARRKGPPPPPP--KRLSSVSGPSPEPPPLDESPGPKEGATGPRRRTLSEPAG 912
Query: 405 PWAPPVYAPPAAPGPYAAWTSSRPARPAPLSHPTAR 440
P PP PPA GP + + P P P +R
Sbjct: 913 PSEPP--GPPAPAGPA---SDTEEEEPGPEGTPPSR 943
Score = 32.3 bits (72), Expect = 1.0
Identities = 80/338 (23%), Positives = 104/338 (30%), Gaps = 86/338 (25%)
Query: 210 DGLPRGSPHNSAGPRTPRLARASPPGEPFMRVAPPGLAAAAAARDSEPGPVPGAGGCGED 269
+GL G +AGPR + P L AA A EP P+P A ++
Sbjct: 649 EGLENGEGPATAGPRLLTFQGSE---------LSPELQAAMAGGGPEPLPLPPARSPSQE 699
Query: 270 RLGSQ------------PRPENGPPGSHRTAS-GRGLRRGDSEGGVNRGIGPS------- 309
+G++ P+P G P + + G R G GP
Sbjct: 700 SIGARSRGSGHSQEQPAPQPSGGDPSPPQERNLPEGTERPPKLCSSLPGQGPPPYVFMYP 759
Query: 310 -----------------RVSLLA------PDKKRLNNAPRGSAAPGP-----------PR 335
S LA PD R + PGP P
Sbjct: 760 QGSPSSPAPGPPPGAPWAFSYLAGPPATPPDPPRPKRRSHSLSRPGPTEGDAEGEAEGPV 819
Query: 336 GPRLQGGGSLTLQPD-YAKYATFKAAALKAAEAAPRDFCQRFPALEPSPRQPPAR----A 390
G L +LT +P A T + A PR A P PP +
Sbjct: 820 GSTLGSYATLTRRPGRSALVRTSPSVTPTPARGTPRSQSFALRARRKGPPPPPPKRLSSV 879
Query: 391 PRPSPDLPAPLDACPWAPPVYAPPAAPGPYAAWTSSRPARPAPLSHPTARAFQVPRRPGH 450
PSP+ P PLD P A GP T S PA P+ P A A G
Sbjct: 880 SGPSPE-PPPLDESPG-----PKEGATGPRRR-TLSEPAGPSEPPGPPAPA-------GP 925
Query: 451 AARRQFSVKMPETFNPQLPGLYGSAGRGSRYLRTNSKT 488
A+ + PE P GS+G G + + T
Sbjct: 926 ASDTEEEEPGPEGTPPS----RGSSGEGLPFAEEGNLT 959
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 52.4 bits (124), Expect = 9e-07
Identities = 117/471 (24%), Positives = 142/471 (30%), Gaps = 65/471 (13%)
Query: 34 PSGRAGAP----EAQGPAAPGTTAPEGGDRCRGYYDVMGQWDPPFNCSSGAYSFCCGTCG 89
P G GAP E GP PG P G + G PP G G
Sbjct: 583 PKGNDGAPGKNGERGGPGGPGPQGPPGKN------GETGPQGPPGPTGPGGDKGDTGP-- 634
Query: 90 YRFCCHDGPRRLDQSRCSNYDTPAWVQTGRP--PARARDTAAPRDPGRERSHTAVYAVCG 147
GP+ L Q P + G+P P D AP PG + G
Sbjct: 635 ------PGPQGL-QGLPGTGGPPG--ENGKPGEPGPKGDAGAPGAPGGKGD-------AG 678
Query: 148 VAALLVLAGIGARLGLERAHSPRARRTVTRALTELLKQPGPQEPLPPTLGPPLGGCVQVQ 207
G+ GL P A GP P P L G +
Sbjct: 679 APGERGPPGLAGAPGLRGGAGPPGPEGGKGAA-------GPPGPPGAAGTPGLQGMPGER 731
Query: 208 MGDGLP--RGSPHNSAGPRTPRLARASPPGEPFMRVAPPGLAAAAAARDSEPGPVPGAGG 265
G G P +G GP + P P + PPG A D G PG G
Sbjct: 732 GGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPG--DKGEGGAPGLPG 789
Query: 266 CGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEGGVNRGIGPSRVSLLAPDKKRLNNAP 325
R R E GPPG G + G+ G RG P P + P
Sbjct: 790 IAGPRGSPGERGETGPPGPAGFPGAPG-QNGEPGGKGERG-APGEKGEGGP--PGVAGPP 845
Query: 326 RGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAAALKAAEAAPRDFCQRFPALEPSPRQ 385
GS GPP ++G P A + A L + + P+ P
Sbjct: 846 GGSGPAGPPGPQGVKGERGSPGGPGAAGFP--GARGLPGPPGSNGNPGPPGPSGSPGKDG 903
Query: 386 PPARAPRP----SPDLPAPLDAC-----PWAPPVYAPPAAPGP--YAAWTSSR-----PA 429
PP A SP + P +P PP APGP A T +R P
Sbjct: 904 PPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPG 963
Query: 430 RPAPLSHPTARAFQVPRRPGHAARRQFSVKMPETFNPQLPGLYGSAGRGSR 480
P P P + V G S + LPGL G+AG R
Sbjct: 964 MPGPRGSPGPQG--VKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGR 1012
Score = 46.2 bits (108), Expect = 7e-05
Identities = 79/315 (25%), Positives = 99/315 (31%), Gaps = 57/315 (18%)
Query: 185 QPGPQEPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPRTP-------RLARASPPGEP 237
QPGP P P T G P + ++G P GSP ++ P PPG P
Sbjct: 331 QPGPPGP-PGTAGFPGSPGAKGEVG---PAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPP 386
Query: 238 FMRVAPPGLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGD 297
+ +P G + P +PGA G +G++ GPPG GLR G
Sbjct: 387 GINGSPGGKG------EMGPAGIPGAPGL----MGAR-----GPPGPAGANGAPGLRGGA 431
Query: 298 SEGGVNRGIGP-----SRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYA 352
E G N G R P +PG P L G P +
Sbjct: 432 GEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFR 491
Query: 353 KYATFKAAALKAAEAAPRDFCQRFPALEPSPRQPPARAPRPSPDLPAPLDACPWAPPVYA 412
A + A R P P P A P D P P +
Sbjct: 492 GPAGPNGIPGEKGPAGERG--------APGPAGPRGAAGEPG------RDGVPGGPGMRG 537
Query: 413 PPAAPG----------PYAAWTSSRPARPAPLSHPTARAFQVPRRPGHAARRQFSVKMPE 462
P +PG P + S RP P P S P + V PG K E
Sbjct: 538 MPGSPGGPGSDGKPGPPGSQGESGRPGPPGP-SGPRGQP-GVMGFPGPKGNDGAPGKNGE 595
Query: 463 TFNPQLPGLYGSAGR 477
P PG G G+
Sbjct: 596 RGGPGGPGPQGPPGK 610
Score = 45.8 bits (107), Expect = 9e-05
Identities = 82/301 (27%), Positives = 96/301 (31%), Gaps = 53/301 (17%)
Query: 178 ALTELLKQPGPQEPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPRTPRLARASPPGEP 237
A+ L PGP P P P G G P GSP P P A S P P
Sbjct: 165 AVGGLAGYPGPAGPPGPPGPPGTSG------HPGSP-GSPGYQGPPGEPGQAGPSGPPGP 217
Query: 238 FMRVAPPGLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGD 297
+ P G A +D E G PG G +R P GP G +G R D
Sbjct: 218 PGAIGPSG----PAGKDGESGR-PGRPG---ERGLPGPPGIKGPAGIPGFPGMKGHRGFD 269
Query: 298 SEGGVNRGIGPSRVSLLAPDKKRLNNAPRGSAAPGP--PRGPRLQGGGSLTLQPDYAKYA 355
G G AP K N P + APGP PRG + G
Sbjct: 270 GRNGEKGETG-------APGLKGENGLPGENGAPGPMGPRGAPGERG------------- 309
Query: 356 TFKAAALKAAEAAPRDFCQRFPALEPSPRQPPARAPRPSPDLPAPLDACPWAPPVYAPPA 415
L A A + R +P P PP A P P A P
Sbjct: 310 ---RPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFP---------GSPGAKGEVGPAG 357
Query: 416 APGPYAAWTSSRPARPAPLSHPTARAFQVPRRPGHAARRQFSVKMPETFNPQLPGLYGSA 475
+PG A + P P H A+ P PG +M P PGL G+
Sbjct: 358 SPGSNGA--PGQRGEPGPQGHAGAQG--PPGPPGINGSPGGKGEMGPAGIPGAPGLMGAR 413
Query: 476 G 476
G
Sbjct: 414 G 414
Score = 44.7 bits (104), Expect = 2e-04
Identities = 48/168 (28%), Positives = 54/168 (32%), Gaps = 24/168 (14%)
Query: 325 PRGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAAALKAAEAAPRDFCQRFPALEPSPR 384
P +PGPP G P Y Y A+ P PA P P
Sbjct: 129 PGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPG------PAGPPGPP 182
Query: 385 QPPARAPRP-SPDLPA-------PLDACPWAPPVYAPPAAPGPYAA----WTSSRPARPA 432
PP + P SP P P A P PP PP A GP S RP RP
Sbjct: 183 GPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPP--GPPGAIGPSGPAGKDGESGRPGRPG 240
Query: 433 PLSHPTARAFQ----VPRRPGHAARRQFSVKMPETFNPQLPGLYGSAG 476
P + +P PG R F + E PGL G G
Sbjct: 241 ERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENG 288
Score = 43.1 bits (100), Expect = 6e-04
Identities = 107/406 (26%), Positives = 125/406 (30%), Gaps = 68/406 (16%)
Query: 34 PSGRAGAPEAQGPAAP-------GTTAPEGGDRCRGYYDVMGQWDPPFNCSSGAYSFCCG 86
P G AG P GPA P G GG G+ G PP + + G
Sbjct: 838 PPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSG 897
Query: 87 TCGYRFCCHDGPRRLDQSRCSNYDTPAWVQTGRPPARARDTAAPRDPGRERSHTA--VYA 144
+ G DGP N P P A PG + A
Sbjct: 898 SPG-----KDGP----PGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLG 948
Query: 145 VCGVAALLVLAGIGARLGLERAHSPR-----ARRTVTRALTELLKQPGPQ--EPLPPTLG 197
+ G+ LAG G + P+ + + L+ PGPQ L T G
Sbjct: 949 IAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAG 1008
Query: 198 PPLGGCVQVQMGDGLPRGSPHNSAGPRTPRLARASP--PGEPFMRVAPPGLAAAAAARDS 255
P G DGLP S G + R SP PG P PG
Sbjct: 1009 EP--GRDGNPGSDGLP--GRDGSPGGKGDRGENGSPGAPGAP----GHPG---------- 1050
Query: 256 EPGPVPGAGGCGEDRLGSQPRPENGPPG--SHRTASGRGLRRGDSEGGVNRGIGPSRVSL 313
PGPV AG G DR S P G PG R A G RGD RG
Sbjct: 1051 PPGPVGPAGKSG-DRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERG-------- 1101
Query: 314 LAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAAALKAAEAAPRDFC 373
A K P APG P GP Q G + P + + + +D
Sbjct: 1102 -AAGIKGHRGFPGNPGAPGSP-GPAGQQGAIGSPGPAGPR------GPVGPSGPPGKDGT 1153
Query: 374 QRFPALEPSPRQPPARAPRPSPDLPAPLDACPWAPPVYAPPAAPGP 419
P P R R S P P P PP APGP
Sbjct: 1154 SGHPGPIGPPGPRGNRGERGSEGSPGH----PGQPGPPGPPGAPGP 1195
Score = 34.7 bits (78), Expect = 0.20
Identities = 122/508 (24%), Positives = 151/508 (29%), Gaps = 73/508 (14%)
Query: 5 GARGLLGGRRPPGLRLALALRLALLLARP-PSGRAGAPEAQGP----AAPGTTAPEGGDR 59
GA+G +G PG A R P P G AGA GP +PG G
Sbjct: 348 GAKGEVGPAGSPGSNGAPGQR-----GEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAG 402
Query: 60 CRGYYDVMGQWDPPFNCSSGAYSFCCGTCGYRFCCHDGPRRLDQSRCSNYDTPAWVQTGR 119
G +MG PP + G G +G + R + G
Sbjct: 403 IPGAPGLMGARGPPGPAGANGAPGLRGGAGEPG--KNGAKGEPGPRGERGEAGI---PGV 457
Query: 120 PPARARD--TAAPRDPGRERSHTAVYAVCGVAALLVLAGIGARLGLERAHSPRARRTVTR 177
P A+ D +P +PG + G G G+ P R
Sbjct: 458 PGAKGEDGKDGSPGEPGAN----GLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGA-- 511
Query: 178 ALTELLKQPGPQEPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPRTPRLARASPPGEP 237
PGP P P G V G G+ RG P + GP + + PPG
Sbjct: 512 --------PGPAGPRGAAGEPGRDG---VPGGPGM-RGMPGSPGGPGSD--GKPGPPGSQ 557
Query: 238 FM--RVAPPGLAAAAAARD--SEPGPV--PGAGGCGEDRLGSQPRPENGPPGSHRTASGR 291
R PPG + PGP GA G +R G GPPG + +
Sbjct: 558 GESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQ 617
Query: 292 GLRRGDSEGGVNRGIGPSRVSLL----------APDKKRLNNAPRGSA-APGPPRGPRLQ 340
G GG GP L + K P+G A APG P G
Sbjct: 618 GPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDA 677
Query: 341 GGGSLTLQPDYAKYATFKAAALKAAEAAPRDFCQRFPALEPSP----------RQPPARA 390
G P A A L+ P + A P P P R
Sbjct: 678 GAPGERGPPGLA-----GAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERG 732
Query: 391 PRPSPDLPAPLDACPWAPPVYAPPAAPGPYAAWTSSRPARPAPLSHPTARA-FQVPRRPG 449
SP P P P P GP P P P P + P PG
Sbjct: 733 GLGSPG-PKGDKGEPGGPGADGVPGKDGPRGPTGPIGP--PGPAGQPGDKGEGGAPGLPG 789
Query: 450 HAARRQFSVKMPETFNPQLPGLYGSAGR 477
A R + ET P G G+ G+
Sbjct: 790 IAGPRGSPGERGETGPPGPAGFPGAPGQ 817
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 52.4 bits (124), Expect = 9e-07
Identities = 84/313 (26%), Positives = 108/313 (34%), Gaps = 48/313 (15%)
Query: 188 PQEPLPPT---LGPPLGGCVQVQ--MGDGLPRGSPHNSAGPRTPRLARASPPGEPFMRVA 242
PQ P PP GPP G + Q G P+G P G R +R SPPG+P +
Sbjct: 129 PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQ--GDNKSRSSR-SPPGKP--QGP 183
Query: 243 PPGLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRP--ENGPP--GSHRTASGR---GLRR 295
PP PG G G ++ P P GPP G +++ S R G +
Sbjct: 184 PPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQ 243
Query: 296 GDSEGGVNRGIGPSRVSLLAPDKKRL-----NNAPRGSAAPGPPRGPRLQGGGSLTLQPD 350
G G N+ GP P K + N P+G PG P+GP QGG
Sbjct: 244 GPPPQGGNQPQGPPP----PPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGS------- 292
Query: 351 YAKYATFKAAALKAAEAAPRDFCQRFPALEPSPRQPPARAPRPSPDLPAPLDACPWAPPV 410
K+ + ++ P+ + P PP + P P P PP
Sbjct: 293 -------KSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK----PQGPPP 341
Query: 411 YAPPAAPGPYAAWTSSRPARP---APLSHPTARAFQVPRRPGHAARRQFSVKMPETFNPQ 467
P P P + SR AR P P P A + P PQ
Sbjct: 342 PGKPQGPPPQGG-SKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQ 400
Query: 468 LPGLYGSAGRGSR 480
P GR SR
Sbjct: 401 GPPRPPQGGRPSR 413
Score = 52.0 bits (123), Expect = 1e-06
Identities = 71/263 (26%), Positives = 95/263 (36%), Gaps = 46/263 (17%)
Query: 188 PQEPLPPT---LGPPLGGCVQVQ--MGDGLPRGSPHNSAGPRTPRLARASPPGEPFMRVA 242
PQ P PP GPP G + Q G P+G P R+PR SPPG+P +
Sbjct: 68 PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPR----SPPGKP--QGP 121
Query: 243 PPGLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRP--ENGPP--GSHRTASGR---GLRR 295
PP PG G G ++ P P GPP G +++ S R G +
Sbjct: 122 PPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQ 181
Query: 296 GDSEGGVNRGIGPSRVSLLAPDK-----KRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPD 350
G G N+ GP P K + N P+G PG P+GP QG
Sbjct: 182 GPPPQGGNQPQGPPP----PPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDN------- 230
Query: 351 YAKYATFKAAALKAAEAAPRDFCQRFPALEPSPRQPPARAPRPSPDLPAPLDACPWAPPV 410
K+ + ++ P+ + P PP + P P P PP
Sbjct: 231 -------KSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK----PQGPPP 279
Query: 411 YAPPAAPGPYAAWTSSRPARPAP 433
P P P + SR +R P
Sbjct: 280 PGKPQGPPPQGG-SKSRSSRSPP 301
Score = 49.7 bits (117), Expect = 6e-06
Identities = 71/258 (27%), Positives = 91/258 (35%), Gaps = 51/258 (19%)
Query: 188 PQEPLPPT---LGPPLGGCVQVQ--MGDGLPRGSPHNSAGPRTPRLARASPPGEPFMRVA 242
PQ P PP GPP G + Q G P+G P G + AR SPPG+P +
Sbjct: 191 PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQ--GDNKSQSAR-SPPGKP--QGP 245
Query: 243 PPGLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRP--ENGPP--GSHRTASGR---GLRR 295
PP PG G G ++ P P GPP G ++ S R G +
Sbjct: 246 PPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQ 305
Query: 296 GDSEGGVNRGIGPSRVSLLAPDKKRL-----NNAPRGSAAPGPPRGPRLQGGGSLTLQPD 350
G G N+ GP P K + N P+G PG P+GP QGG
Sbjct: 306 GPPPQGGNQPQGPPP----PPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGS------- 354
Query: 351 YAKYATFKAAALKAAEAAPRDFCQRFPALEPSPRQPPARAPRPSPDLPAPLDACPWAPPV 410
K+ + ++ P+ P Q P+ P P APP
Sbjct: 355 -------KSRSARSPPGKPQ-----------GPPQQEGNNPQGPPPPAGGNPQQPQAPPA 396
Query: 411 YAPPAAPGPYAAWTSSRP 428
P P P SRP
Sbjct: 397 GQPQGPPRPPQGGRPSRP 414
Score = 32.0 bits (71), Expect = 1.3
Identities = 41/194 (21%), Positives = 59/194 (30%), Gaps = 41/194 (21%)
Query: 252 ARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEGGVNRGIGPSRV 311
+++ P + G + G++P+ PPG + +G G +G P
Sbjct: 24 SQEESPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQG-------GNQPQGPPPPPG 76
Query: 312 SLLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAAALKAAEAAPRD 371
P + N P+G PG P+GP QG S
Sbjct: 77 KPQGPPPQG-GNKPQGPPPPGKPQGPPPQGDKS--------------------------- 108
Query: 372 FCQRFPALEPSPRQPPARAPRPSPDLPAPLDACPWAPPVYAPPAAPGPYAAWTSSRPARP 431
R P P Q P P P P P PP P P +P P
Sbjct: 109 ---RSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPP---PQGGNKPQGPPPPGKPQGP 162
Query: 432 APLSHPTARAFQVP 445
P +R+ + P
Sbjct: 163 PPQGDNKSRSSRSP 176
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 52.4 bits (124), Expect = 9e-07
Identities = 116/483 (24%), Positives = 155/483 (32%), Gaps = 88/483 (18%)
Query: 33 PPSGRAGAPEAQGPAAPGTTAPEGGDRCRGYYDVMGQWDPPFNCSSGAYSFCCGTCGYRF 92
PP G AG PA+PG P +R V P + SS S C +
Sbjct: 594 PPKGLAGP-----PASPGKAQPPKPER------VTSLRSPGASVSSSLTSLCSSSSDPAP 642
Query: 93 CCHDGPRRLDQSRCSNYDTPAWVQTGRPPARARDTAAPRDPGRERSHTAVYAVCGVAALL 152
GP+ L TP + PP AP P + + A +AA
Sbjct: 643 SDRSGPQIL---------TPLGDRFVIPP--HPKVPAPFSPPPSKPRSPNPAAPALAAPA 691
Query: 153 VLAGIGARLGLERAHSPRARRTVT--RALTELLKQPGPQEPLPPTLGPPLGGCVQVQMGD 210
V+ G + P + T+T + + K P PP+ PP + ++
Sbjct: 692 VVPGPVSTTDASPQSPPTPQTTLTPLQESPVISKDQSPPPSPPPSYHPPPPPTKKPEVVV 751
Query: 211 GLPRGS-------------PHNSAGPRTPRLARAS--PPGEPFMRVAPPGLAAAAAARDS 255
P S P P L+ A PP E F VA P A + + +
Sbjct: 752 EAPSASETAEEPLQDPNWPPPPPPAPEEQDLSMADFPPPEEAFFSVASPEPAGPSGSPEL 811
Query: 256 EPGPVPGAGGCGEDRL----GSQPRPENGPPGSHRTASGRGLRRGDSEG-GVNRGIGPSR 310
P + ++ P P P +A G + E G ++G GP R
Sbjct: 812 VSSPAASSSSATALQIQPPGSPDPPPAPPAPAPASSAPGHVAKLPQKEPVGCSKGGGPPR 871
Query: 311 VSLLAP-------DKKRLNNAPRGSAAPGPPRGP---------RLQGGGSLTLQPDYAKY 354
+ AP RL + AP P GP L G S P +
Sbjct: 872 EDVGAPLVTPSLLQMVRLRSVGAPGGAPTPALGPSAPQKPLRRALSGRASPVPAPSSGLH 931
Query: 355 AT--FKAAALKAAEAAPRDFCQRFPALEPSPRQPPA--------------RAPRP-SPD- 396
A KA +L A+E P EP P Q PA + RP SP+
Sbjct: 932 AAVRLKACSLAASEGLSSAQPNGPPEAEPRPPQSPASTASFIFSKGSRKLQLERPVSPET 991
Query: 397 -------LPAPLDACPWAPPVYAP---PAAPGPYAAWTSSRPARPAPLSHPTARAFQVPR 446
L A L + P AP P AP P A S PA S+P A P
Sbjct: 992 QADLQRNLVAELRSISEQRPPQAPKKSPKAPPPVARKPSVGVPPPASPSYPRAEPLTAPP 1051
Query: 447 RPG 449
G
Sbjct: 1052 TNG 1054
Score = 46.6 bits (109), Expect = 5e-05
Identities = 71/255 (27%), Positives = 94/255 (36%), Gaps = 49/255 (19%)
Query: 213 PRGSPHNSAGPRTPRLARAS----PPGEPFMRVAPPGLAAAAAAR-------DSEP-GPV 260
P GSP + P + + PPG P APP A A++A EP G
Sbjct: 805 PSGSPELVSSPAASSSSATALQIQPPGSPDPPPAPPAPAPASSAPGHVAKLPQKEPVGCS 864
Query: 261 PGAGGCGED--------------RL------GSQPRPENGPPGSH----RTASGRGLRRG 296
G G ED RL G P P GP R SGR
Sbjct: 865 KGGGPPREDVGAPLVTPSLLQMVRLRSVGAPGGAPTPALGPSAPQKPLRRALSGRASPVP 924
Query: 297 DSEGGVNRGIGPSRVSLLAPDKKRLNNA-PRG--SAAPGPPRGPRLQGG-----GSLTLQ 348
G++ + SL A + L++A P G A P PP+ P GS LQ
Sbjct: 925 APSSGLHAAVRLKACSLAASEG--LSSAQPNGPPEAEPRPPQSPASTASFIFSKGSRKLQ 982
Query: 349 PDYAKYATFKAAALKAAEAAPRDFCQRFPALEP--SPRQPPARAPRPSPDLPAPLD-ACP 405
+ +A + A R ++ P P SP+ PP A +PS +P P + P
Sbjct: 983 LERPVSPETQADLQRNLVAELRSISEQRPPQAPKKSPKAPPPVARKPSVGVPPPASPSYP 1042
Query: 406 WAPPVYAPPAAPGPY 420
A P+ APP P+
Sbjct: 1043 RAEPLTAPPTNGLPH 1057
Score = 37.7 bits (86), Expect = 0.024
Identities = 53/209 (25%), Positives = 77/209 (36%), Gaps = 34/209 (16%)
Query: 243 PPGLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRPEN---------GPPGSHRTASGRGL 293
P GL + P P G G + G+ P P N P GS R
Sbjct: 518 PLGLPPKPERKQQPQLPRPPTTG-GSEGAGAAPCPPNPANSWVPGLSPGGSRRPPRSPER 576
Query: 294 RRGDSEGGVNRGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAK 353
S G ++ P+ L P K L P A+PG + P+ + SL P +
Sbjct: 577 TLSPSSGYSSQSGTPT----LPP--KGLAGPP---ASPGKAQPPKPERVTSLR-SPGASV 626
Query: 354 YATFKAAALKAAEAAPRD---------FCQRFPALEPSPRQPPARAPRPSPDLPAPLDAC 404
++ + +++ AP D RF + P P+ P +P PS P
Sbjct: 627 SSSLTSLCSSSSDPAPSDRSGPQILTPLGDRF-VIPPHPKVPAPFSPPPSK----PRSPN 681
Query: 405 PWAPPVYAPPAAPGPYAAWTSSRPARPAP 433
P AP + AP PGP + +S + P P
Sbjct: 682 PAAPALAAPAVVPGPVSTTDASPQSPPTP 710
Score = 36.6 bits (83), Expect = 0.053
Identities = 73/321 (22%), Positives = 106/321 (33%), Gaps = 59/321 (18%)
Query: 168 SPRARRTVTRALTELLKQPGPQEPLPPTLG-----------------PP------LGGCV 204
+P R ++ A+ L GP EPL P + PP LG C
Sbjct: 314 APPLTRPMSLAVPGLTGGAGPAEPLSPAMSISPQATYLSKLIPHAVLPPTVDVVALGRCS 373
Query: 205 QVQMGDGLPRGSPHNSAGPRTPRLARASPPGEPFMRVAPPGLAAAAAARDSEPGPVPGAG 264
L R S H+++ L R S P R P ++ + + G
Sbjct: 374 L----RTLSRCSLHSASPASVRSLGRFSSVSSPQPRSRHPSSSSDTWSHSQSSDTIVSDG 429
Query: 265 GCGEDRLGSQPRPENGPPGSH-----RTASGRGLRRGDSEGGVN-------------RGI 306
+ GS+ +PE+ + + SGRG G S + R +
Sbjct: 430 STLSSKGGSEGQPESSTASNSVVPPPQGGSGRGSPSGGSTAEASDTLSIRSSGQLSGRSV 489
Query: 307 GPSRVSLLAPDKKRLNNA-PRGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAA-ALKA 364
++ P +R ++ RG A P P G L QP + T + A
Sbjct: 490 SLRKLKRPPPPPRRTHSLHQRGLAVPDGPLG--LPPKPERKQQPQLPRPPTTGGSEGAGA 547
Query: 365 AEAAPRDFCQRFPALEPSPRQPPARAPR----PSPDLPAPLDACPWAPP--VYAPPAAPG 418
A P P L P + P R+P PS + P PP + PPA+PG
Sbjct: 548 APCPPNPANSWVPGLSPGGSRRPPRSPERTLSPSSGYSSQ-SGTPTLPPKGLAGPPASPG 606
Query: 419 PYAAWTSSRPARPAPLSHPTA 439
+P R L P A
Sbjct: 607 KA---QPPKPERVTSLRSPGA 624
Score = 35.8 bits (81), Expect = 0.091
Identities = 69/295 (23%), Positives = 93/295 (31%), Gaps = 48/295 (16%)
Query: 213 PRGSPHNSAGPRTPRLARASPPGEPFMRVAPPGLAAAAAARDSEPGPVPGAGGCGEDRLG 272
P G P + P+L R G G AA + VPG G R
Sbjct: 518 PLGLPPKPERKQQPQLPRPPTTG------GSEGAGAAPCPPNPANSWVPGLSPGGSRRPP 571
Query: 273 SQPRPENGPPGSHRTASG------RGLRRGDSEGGVNRGIGPSRVSLL----APDKKRLN 322
P P + + SG +GL + G + P RV+ L A L
Sbjct: 572 RSPERTLSPSSGYSSQSGTPTLPPKGLAGPPASPGKAQPPKPERVTSLRSPGASVSSSLT 631
Query: 323 NAPRGSAAPGPP--RGPRLQG--GGSLTLQPDYAKYATFKAAALKAAEAAPRDFCQRFPA 378
+ S+ P P GP++ G + P A F K P PA
Sbjct: 632 SLCSSSSDPAPSDRSGPQILTPLGDRFVIPPHPKVPAPFSPPPSKPRSPNPAAPALAAPA 691
Query: 379 LEP--------SPRQPPARAPRPSPDLPAPL-----DACPWAPPVYAPPAAP-------- 417
+ P SP+ PP +P +P+ P PP Y PP P
Sbjct: 692 VVPGPVSTTDASPQSPPTPQTTLTPLQESPVISKDQSPPPSPPPSYHPPPPPTKKPEVVV 751
Query: 418 -GPYAAWTSSRPAR-----PAPLSHPTARAFQVPRRPGHAARRQFSVKMPETFNP 466
P A+ T+ P + P P P + + P FSV PE P
Sbjct: 752 EAPSASETAEEPLQDPNWPPPPPPAPEEQDLSMADFP-PPEEAFFSVASPEPAGP 805
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 52.0 bits (123), Expect = 1e-06
Identities = 70/258 (27%), Positives = 91/258 (35%), Gaps = 47/258 (18%)
Query: 194 PTLGPPLGGCVQVQMGDGLPRGSPHN---SAGPRTPRLARASPPGEPFMRVAPPGLAAAA 250
P PP G P+GSP P P + SP G P + P
Sbjct: 1301 PATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGP 1360
Query: 251 AARDSEPGPVPGAGGCGEDRLGSQPRPENGP---PGSHRTASGRGLRRGDSEGGVNRGIG 307
S+ GP P A + P + GP P S + +GD
Sbjct: 1361 TTPSSKEGPTPPA---------ATPSHKGGPAMTPPSPKRGPAIPSPKGDPTS------- 1404
Query: 308 PSRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAAALKAAEA 367
V L+P K AP A P G G LT P + KA A A +
Sbjct: 1405 -PAVIPLSPKK-----AP---ATPVTREGAATPSKGDLT-PPAVTPVSLKKAPATSAPKG 1454
Query: 368 APRDFCQR----FPAL-EPSPRQPPA-------RAPRPSPDLPAPLDACPWAPPVYAPPA 415
P + PA+ PSP++PPA +P+ +P PAP+ A P P V P+
Sbjct: 1455 GPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGA-PTLPAVI--PS 1511
Query: 416 APGPYAAWTSSRPARPAP 433
+P A SSR AP
Sbjct: 1512 SPKEVPATPSSRRDPIAP 1529
Score = 48.9 bits (115), Expect = 1e-05
Identities = 75/298 (25%), Positives = 93/298 (31%), Gaps = 49/298 (16%)
Query: 187 GPQEPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPRTPRLARASPPGEPFMRVAPPGL 246
GP P P G P V G P +P P SP G P P G
Sbjct: 999 GPATPSPK--GAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGA 1056
Query: 247 AAAAAARDSEP--GPV-PGAGGCGEDRLGSQPRPENGP--PGSHRTASGRGLRRGDSEGG 301
AA P GP P G + P P+ GP P +GG
Sbjct: 1057 PTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGG 1116
Query: 302 V----NRGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPRG--------PRLQGGGSLTLQP 349
+ ++G P+ + P +P+G A PP+G P GG T P
Sbjct: 1117 LATPPHKG-APTTPAATPP-------SPKGGLATPPPKGAPTTPAATPPSPKGGLATPPP 1168
Query: 350 DYAKYATFKAAALKAAEAAPRDFCQRFPALEPSPRQPPARAPRPSPDLPAPLDACPWAPP 409
A T AA + + P+ + +P P A P P L P P
Sbjct: 1169 KGAP--TTPAATPPSPKGGLAT-----PSPKGAPTTPAATPPSPKGGLATPSPKGAPTTP 1221
Query: 410 VYAPP------AAPGPYAAWTSSR---------PARPAPLSHPTARAFQVPRRPGHAA 452
PP A P P A T+ PA P P PT A P G A
Sbjct: 1222 AATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLA 1279
Score = 47.8 bits (112), Expect = 2e-05
Identities = 84/328 (25%), Positives = 112/328 (34%), Gaps = 46/328 (14%)
Query: 168 SPRARRTVTRALTELLKQPGPQEPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPRTPR 227
SP+ T T A T + GP P PP P + GL +P + P
Sbjct: 1236 SPKGAPT-TPAATPPSPKGGPATP-PPKGAPTPPAATPPSLKGGL--ATPPHKGAPNPAV 1291
Query: 228 LARASPPGEPFM---RVAPPGLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGS 284
+ SP G P + AP AA + PG P G + + P P+ P
Sbjct: 1292 VTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAV-TPPSPKGTPTLP 1350
Query: 285 HRTASGRGLRRGDSEGGVNRGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGS 344
T S +G G + G P P + P P RGP +
Sbjct: 1351 ATTPSSKG---GPTTPSSKEGPTP-------PAATPSHKGGPAMTPPSPKRGPAIPSPKG 1400
Query: 345 LTLQPDYAKYATFKAAAL---KAAEAAPRDFCQRFPALEPSP--RQPPARAPRPSPDLPA 399
P + KA A + A P PA+ P + P AP+ P P+
Sbjct: 1401 DPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPS 1460
Query: 400 PLDACPWAPPVYAP----PAAPGPYAAWTSSR--PARPAPLSHPTARAF------QVPRR 447
P P V P P AP A +S + PA PAP+ PT A +VP
Sbjct: 1461 S-KGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSSPKEVPAT 1519
Query: 448 PGHAARRQ--------FSVKMPETFNPQ 467
P ++RR S K P T P+
Sbjct: 1520 P--SSRRDPIAPTATLLSKKTPATLAPK 1545
Score = 47.4 bits (111), Expect = 3e-05
Identities = 74/278 (26%), Positives = 89/278 (32%), Gaps = 58/278 (20%)
Query: 186 PGPQ-EPLPPTLGPPL--GGCVQVQMGDGLPRGSPHNSAGPRTPRLARASPPGEPFMRVA 242
P P+ P PP PP GG P+G+P A TP + SP PF + A
Sbjct: 980 PSPKGAPTPPAATPPSPKGGPATPS-----PKGAPTPPAV--TPPSPKGSPAATPFPKGA 1032
Query: 243 PPGLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEGGV 302
AA + P P G + P P+ GP T S +G
Sbjct: 1033 STPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGP----ATPSLKG---------- 1078
Query: 303 NRGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAAAL 362
P+ + P K P AP PP G L P
Sbjct: 1079 ----APTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPH------------ 1122
Query: 363 KAAEAAPRDFCQRFPALEPSPR-----QPPARAP-RPSPDLPAPLDACPWAPPVYAP--P 414
K A P A PSP+ PP AP P+ P+P PP AP P
Sbjct: 1123 KGAPTTP-------AATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTP 1175
Query: 415 AAPGPYAAWTSSRPARPAPLSHPTARAFQVPRRPGHAA 452
AA P A P+P PT A P G A
Sbjct: 1176 AATPPS---PKGGLATPSPKGAPTTPAATPPSPKGGLA 1210
Score = 45.8 bits (107), Expect = 9e-05
Identities = 75/282 (26%), Positives = 95/282 (33%), Gaps = 53/282 (18%)
Query: 186 PGPQ-EPLPPTLGPPLGGCVQVQMGDGLPRG---SPHNSAGPRTPRLARASPPGEPFMRV 241
P P+ P+PP PP P+G +P + P TP A+PP
Sbjct: 1097 PSPKGAPMPPAATPPS------------PKGGLATPPHKGAPTTPA---ATPPSPKGGLA 1141
Query: 242 APPGLAAAAAARDSEPGP-----VPGAGGCGEDRLGSQPRPENG-----PPGSHRTASGR 291
PP A + P P P G + P P+ G P G+ T +
Sbjct: 1142 TPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAAT 1201
Query: 292 ------GLRRGDSEGGVNRGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPRG-PRLQGGGS 344
GL +G P+ + P K P AP P P GG
Sbjct: 1202 PPSPKGGLATPSPKGA------PTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGP 1255
Query: 345 LTLQPDYAKYATFKAA---ALKAAEAAPRDFCQRFPAL--EPSPRQPPARAPRPSPDLPA 399
T P A T AA +LK A P PA+ PSP+ PA +P P
Sbjct: 1256 ATPPPKGAP--TPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGA--PT 1311
Query: 400 PLDACPWAPPVYAPPAAPGPYAAWTSSRPARPAPLSHPTARA 441
P A P +P P P P A T P+P PT A
Sbjct: 1312 PPAATPPSPK--GSPGTPPPKGAPTPPAVTPPSPKGTPTLPA 1351
Score = 44.7 bits (104), Expect = 2e-04
Identities = 70/261 (26%), Positives = 92/261 (35%), Gaps = 42/261 (16%)
Query: 220 SAGPRTPRLARASPPGEPFMRVAPPGLAAAAAARDSEP---GPVPGAGGCGEDRLGSQPR 276
SAGP TP +SP P + ++DS P P P
Sbjct: 814 SAGPDTPIGNLSSPVSPVEASFLPENSLSFQGSKDSPATTHSPTP-------------PS 860
Query: 277 PENGP-PGSHRTASGRGLRRGDSEGGVNRGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPR 335
P+ P P + S +G+ E PS V+L P + G A P P +
Sbjct: 861 PKGAPTPSAVTPLSPKGVTLPPKETPT-----PSVVNLPFPKE--------GPATPAPKQ 907
Query: 336 GPRLQGGGSLTLQPDYAKYATFKAAALKAAEAAPRDFCQRFPALEPSPRQPPAR-APRPS 394
P L S+T AT + A+ + P+ A PSP+ PA +P+ +
Sbjct: 908 APAL----SMTSSSPKKARATPAPKGIPASPS-PKGAPTPPAATPPSPKGGPATPSPKWA 962
Query: 395 PDLPAPLDACP-WAPPVYAPPAAPGPYAAWTSSR---PARPAPLSHPTARAFQVPRRPGH 450
P PA P P +P AP P AA S PA P+P PT A P G
Sbjct: 963 PTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGS 1022
Query: 451 AARRQF--SVKMPETFNPQLP 469
A F P P P
Sbjct: 1023 PAATPFPKGASTPPAATPPSP 1043
Score = 37.7 bits (86), Expect = 0.024
Identities = 51/231 (22%), Positives = 77/231 (33%), Gaps = 19/231 (8%)
Query: 187 GPQEPLPPTLGPPLGGCVQVQMGDGL--PRGSPHNSAGPRTPRLARASPPGEPFMRVAPP 244
G P L PP V ++ P+G P + P L +PP P AP
Sbjct: 1424 GAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPS-PKEPPAPK 1482
Query: 245 GLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHR-----TASGRGLRRGDSE 299
+A +++ + + P P + S P+ P S R TA+ + +
Sbjct: 1483 QVATSSSPKKAPATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPATL 1542
Query: 300 GGVNRGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKA 359
I P+ + P K+ P AP P ++T +T+K
Sbjct: 1543 APKEALIPPA---MTVPSPKKTPAIPTPKEAPATPSSKEASSPPAVTP-------STYKG 1592
Query: 360 AALKAAEAAPRDFCQRFPALEPSPRQPPARAPRPSPDLPAPLDACPWAPPV 410
A P P P+P +P P PAP P +PPV
Sbjct: 1593 APSPKELLIPPAVTSPSPKEAPTPPAVTPPSPEKGPATPAP-KGTPTSPPV 1642
Score = 33.9 bits (76), Expect = 0.35
Identities = 58/246 (23%), Positives = 82/246 (33%), Gaps = 36/246 (14%)
Query: 186 PGPQE-PLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPRTPRLARASPPGEPFMRVAPP 244
P P+E P PP + PP + G P ++ P TP + SP A
Sbjct: 1608 PSPKEAPTPPAVTPP-----SPEKGPATPAPKGTPTSPPVTPSSLKDSPTSP-----ASV 1657
Query: 245 GLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEG---- 300
A + G G + P PE+ P + T G ++ +
Sbjct: 1658 TCKMGATVPQASKGLPAKKGPTALKEVLVAPAPESTPIITAPTRKGPQTKKSSATSPPIC 1717
Query: 301 ----GVNRGIGPSRV---SLLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAK 353
N GP + L P +K + +G A P+GP L P +K
Sbjct: 1718 PDPSAKNGSKGPLSTVAPAPLLPVQKDSSKTAKGKDASHSPKGP---------LAPPESK 1768
Query: 354 YAT-FKAAALKAAEAAPRDFCQRFPALEPSPRQPPARAPRPSPDLPAPLDACPWAPP-VY 411
+T AAA + P + PSP AP P P LP P +P V
Sbjct: 1769 ASTPLTAAAFEKVLPKPESASV---SAAPSPPVSLPLAPSPVPTLPPKQQFLPSSPGLVL 1825
Query: 412 APPAAP 417
P+ P
Sbjct: 1826 ESPSKP 1831
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 51.6 bits (122), Expect = 2e-06
Identities = 87/317 (27%), Positives = 108/317 (34%), Gaps = 71/317 (22%)
Query: 181 ELLKQPGPQEPLPPTLGPPLGGCVQVQMGDGLP--RGSPHNSAGPRTPRLARASPPGEPF 238
+L +PGP P GPP + G G P G P + P R+ +A PPG P
Sbjct: 74 DLKGEPGPPGK-PGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGLP- 131
Query: 239 MRVAP---PGLAAAAAARDSE-----PGP--VPGAGGC---GEDRLGSQPRP-----ENG 280
+V P PGL R + PGP +PG G G+ P P E G
Sbjct: 132 GKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPG 191
Query: 281 PPGSHRTASGRGLRRGDSEGGVNRGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQ 340
P G RGL +GD+ G+G + L AP APGPP P
Sbjct: 192 PQGEPGPPGDRGL-KGDN------GVG----------QPGLPGAPGQGGAPGPPGLPGPA 234
Query: 341 GGGSLTLQPDYAKYATFKAAALKAAEAAPRDFCQRFPALEPSPR-QPPARAPRPSPDLPA 399
G G L AP D + P P PR +P A P+ P +
Sbjct: 235 GLGK---------------PGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDG 279
Query: 400 PLDACPWAPPVYAPPAAPGPYAAWTSSRPARPAPLSHPTARAFQVPRRPGHAARRQFSVK 459
P P GP A P L PT + +P PG R
Sbjct: 280 -----VGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPT--GYGMPGLPGPKGDRG---- 328
Query: 460 MPETFNPQLPGLYGSAG 476
+PGL G G
Sbjct: 329 -----PAGVPGLLGDRG 340
Score = 42.4 bits (98), Expect = 0.001
Identities = 83/285 (29%), Positives = 103/285 (36%), Gaps = 69/285 (24%)
Query: 186 PGPQ-EP--LPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPRTPRLARASPPGEPFMRVA 242
PGP+ EP + P GPP V V GLP GP+ P A+ GEP R
Sbjct: 260 PGPRGEPGAVGPK-GPPGVDGVGVPGAAGLP--------GPQGPSGAK----GEPGTR-G 305
Query: 243 PPGLAAAAA---------ARDSEPGPVPGA----GGCGEDRLGSQPRPEN--GPPGSHRT 287
PPGL D P VPG G GED + P+ GPPG +
Sbjct: 306 PPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGS 365
Query: 288 ASGRGLR-----RGDSEGGVNRGI-------GPSRVSLL--APDKKRLNNA--PRGSAAP 331
A G R +G++ G G+ GPS ++ P ++ L A P G P
Sbjct: 366 AGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGP 425
Query: 332 -------GPPRGPRLQGG----GSLTL--QPDYAKYATFKAAALKAAEAAPRDFCQRFPA 378
G P GP + G G L L QP + A P Q P
Sbjct: 426 KGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGP----QGLPG 481
Query: 379 LEPSPRQP----PARAPRPSPDLPAPLDACPWAPPVYAPPAAPGP 419
L+ P P RA P P P +P + PP PGP
Sbjct: 482 LKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPGPPGP 526
Score = 29.6 bits (65), Expect = 6.5
Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 4 AGARGLLGGRRPPGLRLALALRLALLLARPPS--GRAGAPEAQGPAAPGTTAPEGG 57
AG GLLG R PG + L PP G AG P +GP P A GG
Sbjct: 330 AGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGG 385
>gi|239755810 PREDICTED: hypothetical protein [Homo sapiens]
Length = 499
Score = 51.2 bits (121), Expect = 2e-06
Identities = 108/397 (27%), Positives = 138/397 (34%), Gaps = 95/397 (23%)
Query: 98 PRRLDQSRCS-NYDTPA--WVQ---TGRPPARARDTAAPRDPGRER-SHTAVYAVCGVAA 150
PR L +R + Y P W + TG+P A + G +R SH + CG +
Sbjct: 107 PRPLPAARAAARYPRPTAGWRRHHSTGQPGAPVLGGSGTAGNGGQRVSHRGI---CGPSP 163
Query: 151 LLVLAGIGARLGLERAHSPRARRTVTRALTELLKQPGPQEPLP----PTLGPP------- 199
L L G A PR R R + +PGP LP T PP
Sbjct: 164 LQRLGG-----STGEAPRPRNREAHLRRKPRVGLEPGPHSSLPGGKQETAPPPQPVRTTQ 218
Query: 200 --LGGCVQVQMGDGLPRGSPHNSAGPRTPRLA---RASPPGEPFMRVAPPGLAAAAAARD 254
++G R + P + A PP P +R PP L A + R
Sbjct: 219 TFFSPLFSSKLGIHGDRAGSLTALRPNPDLVTVPLTAHPPVHPPLRSGPP-LGAGSRPRA 277
Query: 255 SEPGPVP----------GAGGCGED--------RLGSQPRP---ENGPPGSHRTASGRGL 293
P P G G GE R+ S R G S R + GRGL
Sbjct: 278 LCPAQTPSQASSSGGGRGTSGAGEGHQHLLITYRVLSNLRRTLCSGGGVASMRISVGRGL 337
Query: 294 RRGDSEGGVNRGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAK 353
R G APD + + AP P R + G SL+LQP + +
Sbjct: 338 RAGPR----------------APDAGSFWDPNPQTLAPHPQASRRPRAGCSLSLQPPHQR 381
Query: 354 YATFKAAALKAAEAAPRDFCQRFPAL-EPSPRQ------PPAR-APRPSPDLPAPLDACP 405
+ P + PAL PSPR+ PAR + RP P PA L+
Sbjct: 382 ---------GLRDGCPSAAGRLSPALPAPSPREVTLGSHVPARVSRRPCPPTPAELNPAT 432
Query: 406 WAPPVYAP--PAAPG-----PYAAWTSSR--PARPAP 433
+P P P A G P TS R PARP P
Sbjct: 433 SSPRPLGPLRPRAGGQSSGHPDRTVTSPRPIPARPRP 469
>gi|239750310 PREDICTED: hypothetical protein [Homo sapiens]
Length = 499
Score = 51.2 bits (121), Expect = 2e-06
Identities = 108/397 (27%), Positives = 138/397 (34%), Gaps = 95/397 (23%)
Query: 98 PRRLDQSRCS-NYDTPA--WVQ---TGRPPARARDTAAPRDPGRER-SHTAVYAVCGVAA 150
PR L +R + Y P W + TG+P A + G +R SH + CG +
Sbjct: 107 PRPLPAARAAARYPRPTAGWRRHHSTGQPGAPVLGGSGTAGNGGQRVSHRGI---CGPSP 163
Query: 151 LLVLAGIGARLGLERAHSPRARRTVTRALTELLKQPGPQEPLP----PTLGPP------- 199
L L G A PR R R + +PGP LP T PP
Sbjct: 164 LQRLGG-----STGEAPRPRNREAHLRRKPRVGLEPGPHSSLPGGKQETAPPPQPVRTTQ 218
Query: 200 --LGGCVQVQMGDGLPRGSPHNSAGPRTPRLA---RASPPGEPFMRVAPPGLAAAAAARD 254
++G R + P + A PP P +R PP L A + R
Sbjct: 219 TFFSPLFSSKLGIHGDRAGSLTALRPNPDLVTVPLTAHPPVHPPLRSGPP-LGAGSRPRA 277
Query: 255 SEPGPVP----------GAGGCGED--------RLGSQPRP---ENGPPGSHRTASGRGL 293
P P G G GE R+ S R G S R + GRGL
Sbjct: 278 LCPAQTPSQASSSGGGRGTSGAGEGHQHLLITYRVLSNLRRTLCSGGGVASMRISVGRGL 337
Query: 294 RRGDSEGGVNRGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAK 353
R G APD + + AP P R + G SL+LQP + +
Sbjct: 338 RAGPR----------------APDAGSFWDPNPQTLAPHPQASRRPRAGCSLSLQPPHQR 381
Query: 354 YATFKAAALKAAEAAPRDFCQRFPAL-EPSPRQ------PPAR-APRPSPDLPAPLDACP 405
+ P + PAL PSPR+ PAR + RP P PA L+
Sbjct: 382 ---------GLRDGCPSAAGRLSPALPAPSPREVTLGSHVPARVSRRPCPPTPAELNPAT 432
Query: 406 WAPPVYAP--PAAPG-----PYAAWTSSR--PARPAP 433
+P P P A G P TS R PARP P
Sbjct: 433 SSPRPLGPLRPRAGGQSSGHPDRTVTSPRPIPARPRP 469
>gi|239744621 PREDICTED: hypothetical protein [Homo sapiens]
Length = 536
Score = 51.2 bits (121), Expect = 2e-06
Identities = 108/397 (27%), Positives = 138/397 (34%), Gaps = 95/397 (23%)
Query: 98 PRRLDQSRCS-NYDTPA--WVQ---TGRPPARARDTAAPRDPGRER-SHTAVYAVCGVAA 150
PR L +R + Y P W + TG+P A + G +R SH + CG +
Sbjct: 144 PRPLPAARAAARYPRPTAGWRRHHSTGQPGAPVLGGSGTAGNGGQRVSHRGI---CGPSP 200
Query: 151 LLVLAGIGARLGLERAHSPRARRTVTRALTELLKQPGPQEPLP----PTLGPP------- 199
L L G A PR R R + +PGP LP T PP
Sbjct: 201 LQRLGG-----STGEAPRPRNREAHLRRKPRVGLEPGPHSSLPGGKQETAPPPQPVRTTQ 255
Query: 200 --LGGCVQVQMGDGLPRGSPHNSAGPRTPRLA---RASPPGEPFMRVAPPGLAAAAAARD 254
++G R + P + A PP P +R PP L A + R
Sbjct: 256 TFFSPLFSSKLGIHGDRAGSLTALRPNPDLVTVPLTAHPPVHPPLRSGPP-LGAGSRPRA 314
Query: 255 SEPGPVP----------GAGGCGED--------RLGSQPRP---ENGPPGSHRTASGRGL 293
P P G G GE R+ S R G S R + GRGL
Sbjct: 315 LCPAQTPSQASSSGGGRGTSGAGEGHQHLLITYRVLSNLRRTLCSGGGVASMRISVGRGL 374
Query: 294 RRGDSEGGVNRGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAK 353
R G APD + + AP P R + G SL+LQP + +
Sbjct: 375 RAGPR----------------APDAGSFWDPNPQTLAPHPQASRRPRAGCSLSLQPPHQR 418
Query: 354 YATFKAAALKAAEAAPRDFCQRFPAL-EPSPRQ------PPAR-APRPSPDLPAPLDACP 405
+ P + PAL PSPR+ PAR + RP P PA L+
Sbjct: 419 ---------GLRDGCPSAAGRLSPALPAPSPREVTLGSHVPARVSRRPCPPTPAELNPAT 469
Query: 406 WAPPVYAP--PAAPG-----PYAAWTSSR--PARPAP 433
+P P P A G P TS R PARP P
Sbjct: 470 SSPRPLGPLRPRAGGQSSGHPDRTVTSPRPIPARPRP 506
>gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo
sapiens]
Length = 402
Score = 51.2 bits (121), Expect = 2e-06
Identities = 46/139 (33%), Positives = 53/139 (38%), Gaps = 20/139 (14%)
Query: 185 QPGPQEPLPPTLGPPLGGCVQVQMGDGLPRGSPHNSAGPRTPRLARASPPGEPFMRVAPP 244
+P PQ P PP PP G V PR P A P TP RA+ P EP VAP
Sbjct: 21 EPPPQPPPPPPPTPPPGEPAPVPAA---PRYLPPLPASPETPE--RAAGPSEPLGEVAP- 74
Query: 245 GLAAAAAARDSEPGPVP-----------GAGGCGEDRLGSQPRPENGPPGSHRTASGRGL 293
A + P P+P G G G RL + GP S A G
Sbjct: 75 ---RCRGADELPPPPLPLQPAGQEVAAAGDSGEGPRRLPEAAAAKGGPGESEAGAGGERE 131
Query: 294 RRGDSEGGVNRGIGPSRVS 312
RRG + R + SR S
Sbjct: 132 RRGAGDQPETRSVCSSRSS 150
Score = 38.9 bits (89), Expect = 0.011
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 380 EPSPRQPPARAPRPSPDLPAPLDACP-WAPPVYAPPAAP 417
EP P+ PP P P P PAP+ A P + PP+ A P P
Sbjct: 21 EPPPQPPPPPPPTPPPGEPAPVPAAPRYLPPLPASPETP 59
Score = 34.3 bits (77), Expect = 0.27
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 380 EPSPRQPPARAPRPSPDLPAPLDACPW-APPVYAPPAAPGPYAAWTSSRPARPAPLSHPT 438
E +PP + P P P P P + P A P Y PP P ++ P+ P P
Sbjct: 16 ESGDAEPPPQPPPPPPPTPPPGEPAPVPAAPRYLPPLPASPETPERAAGPSEPLGEVAPR 75
Query: 439 AR-AFQVPRRP 448
R A ++P P
Sbjct: 76 CRGADELPPPP 86
>gi|122937450 shisa homolog 3 [Homo sapiens]
Length = 238
Score = 51.2 bits (121), Expect = 2e-06
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 45 GPAAPGTTAPEGGDRCRGYYDVMGQWDPPFNCSSGA----YSFCCGTCGYRFCCHDGPRR 100
GPA A + G+ C G+ DV G + F C + CCG+C R+CC R
Sbjct: 17 GPAG----AQQSGEYCHGWVDVQGNYHEGFQCPEDFDTLDATICCGSCALRYCCAAADAR 72
Query: 101 LDQSRCSN 108
L+Q C+N
Sbjct: 73 LEQGGCTN 80
>gi|169210581 PREDICTED: hypothetical protein LOC400558 [Homo
sapiens]
Length = 241
Score = 50.1 bits (118), Expect = 5e-06
Identities = 68/248 (27%), Positives = 84/248 (33%), Gaps = 76/248 (30%)
Query: 215 GSPHNSAGPRTPRLARASPPG---------EPFMRVAPP------------GLAAAAAAR 253
GSP SAGP T A PG +PF +PP GL A A
Sbjct: 33 GSP--SAGPTTQSQPHALRPGLRGRGGWWPQPFWIHSPPLTHSVGTFICLDGLVCALTA- 89
Query: 254 DSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEGGVNRGIGPSRVSL 313
PG G +G P P PPG R G G GP+ V L
Sbjct: 90 -------PGLG------VGLTPAPWR-PPGQSRMLEGHGPWPTPGSRP-----GPTCVCL 130
Query: 314 LAPDKKRLNN--APRGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAAALKAAEAAPRD 371
L P L + RG+ PG P+G A+ A+P+
Sbjct: 131 LTPASSSLRPCLSDRGTC-PGAPQG------------------------AVGTCRASPQS 165
Query: 372 FCQRFPALEPS------PRQPPARAPRPSPDLPAPLDACPWAPPVYAPPAAPGPYAAWTS 425
C R P+L P Q SP L + + PW P P P AA+T+
Sbjct: 166 PCHRHPSLRSGLEWTQPPDQDQGLLTPGSPPLVSGVTQTPWTSPFCPPRPTPWVGAAFTA 225
Query: 426 SRPARPAP 433
+ P PAP
Sbjct: 226 ANPCPPAP 233
>gi|169210101 PREDICTED: hypothetical protein LOC400558 [Homo
sapiens]
Length = 241
Score = 50.1 bits (118), Expect = 5e-06
Identities = 68/248 (27%), Positives = 84/248 (33%), Gaps = 76/248 (30%)
Query: 215 GSPHNSAGPRTPRLARASPPG---------EPFMRVAPP------------GLAAAAAAR 253
GSP SAGP T A PG +PF +PP GL A A
Sbjct: 33 GSP--SAGPTTQSQPHALRPGLRGRGGWWPQPFWIHSPPLTHSVGTFICLDGLVCALTA- 89
Query: 254 DSEPGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEGGVNRGIGPSRVSL 313
PG G +G P P PPG R G G GP+ V L
Sbjct: 90 -------PGLG------VGLTPAPWR-PPGQSRMLEGHGPWPTPGSRP-----GPTCVCL 130
Query: 314 LAPDKKRLNN--APRGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAAALKAAEAAPRD 371
L P L + RG+ PG P+G A+ A+P+
Sbjct: 131 LTPASSSLRPCLSDRGTC-PGAPQG------------------------AVGTCRASPQS 165
Query: 372 FCQRFPALEPS------PRQPPARAPRPSPDLPAPLDACPWAPPVYAPPAAPGPYAAWTS 425
C R P+L P Q SP L + + PW P P P AA+T+
Sbjct: 166 PCHRHPSLRSGLEWTQPPDQDQGLLTPGSPPLVSGVTQTPWTSPFCPPRPTPWVGAAFTA 225
Query: 426 SRPARPAP 433
+ P PAP
Sbjct: 226 ANPCPPAP 233
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.137 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,658,257
Number of Sequences: 37866
Number of extensions: 2049799
Number of successful extensions: 22381
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 1540
Number of HSP's that attempted gapping in prelim test: 13213
Number of HSP's gapped (non-prelim): 7782
length of query: 492
length of database: 18,247,518
effective HSP length: 106
effective length of query: 386
effective length of database: 14,233,722
effective search space: 5494216692
effective search space used: 5494216692
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.