Guide to the Human Genome
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Name: MARCH11 Sequence: fasta or formatted (402aa) NCBI GI: 156523244
Description:

membrane-associated ring finger (C3HC4) 11

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         33           4
 C cysteine            3.7         15           2
 D aspartate           3.2         13           1
 E glutamate           7.2         29           2
 F phenylalanine       2.2          9           1
 G glycine             9.5         38           3
 H histidine           3.0         12           2
 I isoleucine          3.7         15           1
 K lysine              2.2          9           1
 L leucine             8.5         34           2
 M methionine          1.7          7           1
 N asparagine          1.7          7           1
 P proline            10.7         43           7
 Q glutamine           4.7         19           1
 R arginine            7.5         30           2
 S serine              8.2         33           4
 T threonine           3.5         14           1
 V valine              5.7         23           2
 W tryptophan          2.2          9           1
 Y tyrosine            2.5         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   membrane-associated ring finger (C3HC4) 11 
MARCH4                0.365   membrane-associated ring finger (C3HC4) 4 
MARCH9                0.339   membrane-associated RING-CH protein IX 
MARCH1                0.061   membrane-associated RING-CH protein I 
MARCH8                0.058   cellular modulator of immune recognition isoform 7 [...
MARCH8                0.058   cellular modulator of immune recognition isoform 6 [...
MARCH8                0.058   cellular modulator of immune recognition isoform 8 [...
SFPQ                  0.053   splicing factor proline/glutamine rich (polypyrimidin...
HCN2                  0.050   hyperpolarization activated cyclic nucleotide-gated...
GLTSCR1               0.050   glioma tumor suppressor candidate region gene 1 [Ho...
MLL4                  0.047   myeloid/lymphoid or mixed-lineage leukemia 4 
FMNL1                 0.046   formin-like 1 
FOXG1                 0.045   forkhead box G1 
MARCH3                0.044   membrane-associated ring finger (C3HC4) 3 
GGN                   0.042   gametogenetin 
FMN1                  0.040   formin 1 
FLJ20021              0.040   PREDICTED: hypothetical protein 
FLJ20021              0.040   PREDICTED: hypothetical protein 
FLJ20021              0.040   PREDICTED: hypothetical protein 
FMNL2                 0.040   formin-like 2 
SAMD1                 0.039   sterile alpha motif domain containing 1 
KDM6B                 0.039   lysine (K)-specific demethylase 6B 
PDCD7                 0.039   programmed cell death 7 
WASF2                 0.038   WAS protein family, member 2 
PRR12                 0.038   proline rich 12 
SETD1B                0.036   SET domain containing 1B 
MARCH2                0.036   membrane-associated ring finger (C3HC4) 2 isoform 2 ...
MARCH2                0.036   membrane-associated ring finger (C3HC4) 2 isoform 1 ...
MARCH2                0.036   membrane-associated ring finger (C3HC4) 2 isoform 1 ...
WIPF1                 0.035   WAS/WASL interacting protein family, member 1 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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