Guide to the Human Genome
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Name: SHISA3 Sequence: fasta or formatted (238aa) NCBI GI: 122937450
Description:

shisa homolog 3

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         19           3
 C cysteine            5.9         14           2
 D aspartate           2.9          7           1
 E glutamate           4.2         10           1
 F phenylalanine       4.6         11           1
 G glycine             7.6         18           2
 H histidine           2.1          5           1
 I isoleucine          5.0         12           2
 K lysine              0.8          2           1
 L leucine             9.2         22           3
 M methionine          0.8          2           1
 N asparagine          0.8          2           1
 P proline            10.1         24           4
 Q glutamine           5.9         14           2
 R arginine            5.9         14           2
 S serine             11.3         27           4
 T threonine           5.9         14           2
 V valine              3.8          9           2
 W tryptophan          1.3          3           1
 Y tyrosine            3.8          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   shisa homolog 3 
SHISA2                0.368   shisa homolog 2 
LOC729956             0.065   hypothetical protein LOC729956 
LOC729993             0.056   hypothetical protein LOC729993 isoform 2 
LOC729993             0.056   hypothetical protein LOC729993 isoform 1 
LOC440829             0.054   PREDICTED: transmembrane protein 46-like 
LOC440829             0.054   PREDICTED: transmembrane protein 46-like 
SHISA4                0.054   shisa homolog 4 
FLJ45455              0.050   hypothetical protein LOC388336 
FAM159B               0.029   PREDICTED: hypothetical protein LOC100132916 
FAM159B               0.029   PREDICTED: hypothetical protein LOC100132916 
FAM159B               0.029   PREDICTED: hypothetical protein LOC100132916 
KIAA1644              0.027   hypothetical protein LOC85352 
NRG3                  0.027   neuregulin 3 
CRTC3                 0.021   transducer of regulated CREB protein 3 isoform b [H...
CRTC3                 0.021   transducer of regulated CREB protein 3 isoform a [H...
LOC100291061          0.019   PREDICTED: hypothetical protein XP_002348193 
LOC100287602          0.019   PREDICTED: hypothetical protein XP_002343855 
ADRA1A                0.019   alpha-1A-adrenergic receptor isoform 4 
ADRA1A                0.019   alpha-1A-adrenergic receptor isoform 1 
ADRA1A                0.019   alpha-1A-adrenergic receptor isoform 2 
ADRA1A                0.019   alpha-1A-adrenergic receptor isoform 3 
SRRM2                 0.017   splicing coactivator subunit SRm300 
PHC3                  0.017   polyhomeotic like 3 
ZNF469                0.017   zinc finger protein 469 
FMNL2                 0.017   formin-like 2 
FAM159A               0.017   hypothetical protein LOC348378 
UNCX                  0.017   UNC homeobox 
SDC3                  0.015   syndecan 3 
C14orf4               0.015   chromosome 14 open reading frame 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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