Guide to the Human Genome
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Name: SHISA4 Sequence: fasta or formatted (197aa) NCBI GI: 39930575
Description:

shisa homolog 4

Referenced in:

p53 Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         20           2
 C cysteine            6.6         13           2
 D aspartate           2.0          4           1
 E glutamate           2.5          5           1
 F phenylalanine       4.6          9           2
 G glycine             7.1         14           1
 H histidine           1.5          3           1
 I isoleucine          4.1          8           1
 K lysine              1.5          3           1
 L leucine             9.1         18           2
 M methionine          2.0          4           1
 N asparagine          1.5          3           1
 P proline            16.8         33           3
 Q glutamine           5.6         11           2
 R arginine            4.6          9           3
 S serine              3.6          7           1
 T threonine           4.6          9           2
 V valine              4.6          9           2
 W tryptophan          1.0          2           1
 Y tyrosine            6.6         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   shisa homolog 4 
SHISA5                0.134   scotin 
CCNK                  0.073   cyclin K isoform 1 
LOC440829             0.071   PREDICTED: transmembrane protein 46-like 
LOC440829             0.071   PREDICTED: transmembrane protein 46-like 
FLJ45455              0.071   hypothetical protein LOC388336 
SETD1B                0.071   SET domain containing 1B 
CPSF6                 0.063   cleavage and polyadenylation specific factor 6, 68 ...
SHISA3                0.063   shisa homolog 3 
WASF2                 0.061   WAS protein family, member 2 
WBP11                 0.059   WW domain binding protein 11 
TAF4                  0.056   TBP-associated factor 4 
LOC729993             0.054   hypothetical protein LOC729993 isoform 2 
LOC729993             0.054   hypothetical protein LOC729993 isoform 1 
ENAH                  0.054   enabled homolog isoform a 
ENAH                  0.054   enabled homolog isoform b 
SHISA2                0.054   shisa homolog 2 
ZFPM1                 0.051   zinc finger protein, multitype 1 
WASL                  0.051   Wiskott-Aldrich syndrome gene-like protein 
FMNL1                 0.051   formin-like 1 
ANXA11                0.049   annexin A11 
ANXA11                0.049   annexin A11 
ANXA11                0.049   annexin A11 
MAPK7                 0.049   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.049   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.049   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.049   mitogen-activated protein kinase 7 isoform 2 
PRR12                 0.049   proline rich 12 
FMN1                  0.049   formin 1 
FMN2                  0.046   formin 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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