Guide to the Human Genome
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Name: LOC729993 Sequence: fasta or formatted (262aa) NCBI GI: 223633982
Description:

hypothetical protein LOC729993 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {465aa} hypothetical protein LOC729993 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         22           2
 C cysteine            5.0         13           2
 D aspartate           5.0         13           2
 E glutamate           4.6         12           1
 F phenylalanine       5.0         13           1
 G glycine            12.2         32           2
 H histidine           1.5          4           1
 I isoleucine          2.3          6           2
 K lysine              3.1          8           2
 L leucine             9.9         26           3
 M methionine          2.3          6           1
 N asparagine          2.7          7           1
 P proline             6.5         17           2
 Q glutamine           3.4          9           1
 R arginine            8.8         23           2
 S serine              6.1         16           2
 T threonine           5.7         15           1
 V valine              4.6         12           2
 W tryptophan          1.5          4           1
 Y tyrosine            1.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC729993 isoform 2 
LOC729993             0.869   hypothetical protein LOC729993 isoform 1 
LOC440829             0.273   PREDICTED: transmembrane protein 46-like 
LOC440829             0.273   PREDICTED: transmembrane protein 46-like 
FLJ45455              0.209   hypothetical protein LOC388336 
LOC729956             0.173   hypothetical protein LOC729956 
SHISA2                0.057   shisa homolog 2 
SHISA3                0.051   shisa homolog 3 
SHISA4                0.042   shisa homolog 4 
LOC100292082          0.019   PREDICTED: hypothetical protein XP_002345881 
LOC100290709          0.017   PREDICTED: hypothetical protein XP_002346752 
KRT9                  0.017   keratin 9 
LOC100290409          0.015   PREDICTED: hypothetical protein XP_002347745 
LOC100288822          0.015   PREDICTED: hypothetical protein XP_002343515 
LOC284988             0.015   PREDICTED: hypothetical protein 
UBE2Q1                0.015   ubiquitin-conjugating enzyme E2Q 
ZNF318                0.015   zinc finger protein 318 
TCFL5                 0.015   transcription factor-like 5 protein 
NELL1                 0.013   nel-like 1 isoform 2 precursor 
NELL1                 0.013   nel-like 1 isoform 1 precursor 
FBXO45                0.013   F-box protein 45 
PALB2                 0.011   partner and localizer of BRCA2 
LOC100293902          0.011   PREDICTED: similar to hCG1986016 
FAM159B               0.011   PREDICTED: hypothetical protein LOC100132916 
LOC729199             0.011   PREDICTED: hypothetical protein 
LOC100290372          0.011   PREDICTED: hypothetical protein XP_002346788 
FAM159B               0.011   PREDICTED: hypothetical protein LOC100132916 
LOC100288606          0.011   PREDICTED: hypothetical protein XP_002342652 
FAM159B               0.011   PREDICTED: hypothetical protein LOC100132916 
MAPK8IP1              0.009   mitogen-activated protein kinase 8 interacting protei...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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