Guide to the Human Genome
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Name: FLJ45455 Sequence: fasta or formatted (551aa) NCBI GI: 211904177
Description:

hypothetical protein LOC388336

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         48           4
 C cysteine            2.0         11           2
 D aspartate           4.4         24           1
 E glutamate           4.9         27           1
 F phenylalanine       2.4         13           1
 G glycine             6.2         34           2
 H histidine           4.2         23           2
 I isoleucine          3.4         19           1
 K lysine              4.4         24           2
 L leucine             8.2         45           7
 M methionine          1.6          9           1
 N asparagine          3.6         20           2
 P proline             7.4         41           2
 Q glutamine           4.0         22           2
 R arginine            8.5         47           3
 S serine              9.4         52           3
 T threonine           6.5         36           1
 V valine              5.1         28           2
 W tryptophan          0.4          2           1
 Y tyrosine            4.7         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC388336 
LOC729956             0.193   hypothetical protein LOC729956 
LOC729993             0.136   hypothetical protein LOC729993 isoform 1 
LOC729993             0.100   hypothetical protein LOC729993 isoform 2 
LOC440829             0.097   PREDICTED: transmembrane protein 46-like 
LOC440829             0.097   PREDICTED: transmembrane protein 46-like 
SHISA4                0.026   shisa homolog 4 
SHISA2                0.023   shisa homolog 2 
SHISA3                0.022   shisa homolog 3 
XYLT1                 0.010   xylosyltransferase I 
DNAJC9                0.009   DnaJ homolog, subfamily C, member 9 
MLL                   0.009   myeloid/lymphoid or mixed-lineage leukemia protein [...
ZFYVE19               0.009   zinc finger, FYVE domain containing 19 
FAM159B               0.008   PREDICTED: hypothetical protein LOC100132916 
FAM159B               0.008   PREDICTED: hypothetical protein LOC100132916 
FAM159B               0.008   PREDICTED: hypothetical protein LOC100132916 
CDC2L6                0.008   cell division cycle 2-like 6 (CDK8-like) 
ZSWIM6                0.008   zinc finger, SWIM-type containing 6 
LOC728767             0.007   PREDICTED: hypothetical protein 
LOC728767             0.007   PREDICTED: hypothetical protein 
HECA                  0.007   headcase 
LOC100293107          0.007   PREDICTED: hypothetical protein 
LOC729204             0.007   PREDICTED: similar to hCG2045644 
LOC100290679          0.007   PREDICTED: hypothetical protein XP_002347834 
LOC100288571          0.007   PREDICTED: hypothetical protein XP_002343612 
SH3KBP1               0.007   SH3-domain kinase binding protein 1 isoform b 
SH3KBP1               0.007   SH3-domain kinase binding protein 1 isoform a 
PHOX2B                0.007   paired-like homeobox 2b 
LOC100293776          0.006   PREDICTED: hypothetical protein 
LOC100288658          0.006   PREDICTED: hypothetical protein XP_002342750 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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