Guide to the Human Genome
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Name: LOC728503 Sequence: fasta or formatted (499aa) NCBI GI: 239750310
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {536aa} PREDICTED: hypothetical protein
alt mRNA {499aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         49           3
 C cysteine            1.6          8           1
 D aspartate           1.6          8           1
 E glutamate           2.8         14           1
 F phenylalanine       1.0          5           2
 G glycine            12.6         63           3
 H histidine           4.0         20           2
 I isoleucine          1.2          6           1
 K lysine              1.6          8           1
 L leucine             9.8         49           2
 M methionine          0.6          3           1
 N asparagine          1.6          8           1
 P proline            15.0         75           3
 Q glutamine           3.4         17           1
 R arginine           11.2         56           2
 S serine             10.4         52           3
 T threonine           6.2         31           2
 V valine              4.2         21           1
 W tryptophan          0.8          4           1
 Y tyrosine            0.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728503             1.000   PREDICTED: hypothetical protein 
LOC728503             1.000   PREDICTED: hypothetical protein 
NACA                  0.038   nascent polypeptide-associated complex alpha subuni...
WIPF1                 0.036   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.036   WAS/WASL interacting protein family, member 1 
SHANK1                0.034   SH3 and multiple ankyrin repeat domains 1 
FLJ22184              0.032   PREDICTED: hypothetical protein FLJ22184 
TAF4                  0.030   TBP-associated factor 4 
FLJ22184              0.030   PREDICTED: hypothetical protein FLJ22184 
KDM6B                 0.030   lysine (K)-specific demethylase 6B 
BAT3                  0.029   HLA-B associated transcript-3 isoform b 
BAT3                  0.029   HLA-B associated transcript-3 isoform b 
BAT3                  0.029   HLA-B associated transcript-3 isoform b 
BAT3                  0.029   HLA-B associated transcript-3 isoform a 
CIC                   0.029   capicua homolog 
FLJ22184              0.029   PREDICTED: hypothetical protein LOC80164 
GLTSCR1               0.027   glioma tumor suppressor candidate region gene 1 [Ho...
OGFR                  0.026   opioid growth factor receptor 
LOC440829             0.026   PREDICTED: transmembrane protein 46-like 
LOC100293604          0.024   PREDICTED: hypothetical protein 
LOC100131102          0.024   PREDICTED: hypothetical protein 
LOC100287837          0.024   PREDICTED: hypothetical protein XP_002343157 
LOC100131102          0.024   PREDICTED: hypothetical protein 
SH3BP1                0.024   SH3-domain binding protein 1 
PRR12                 0.024   proline rich 12 
LOC100287499          0.023   PREDICTED: hypothetical protein 
LOC100287499          0.023   PREDICTED: hypothetical protein XP_002343643 
ATN1                  0.023   atrophin-1 
ATN1                  0.023   atrophin-1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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