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Search of human proteins with 21361411
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21361411 HMG-box transcription factor 1 [Homo sapiens]
(514 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21361411 HMG-box transcription factor 1 [Homo sapiens] 1077 0.0
gi|112421108 capicua homolog [Homo sapiens] 64 3e-10
gi|41406089 SRY-box 13 [Homo sapiens] 61 3e-09
gi|30061558 SRY (sex determining region Y)-box 5 isoform c [Homo... 60 5e-09
gi|23308715 SRY (sex determining region Y)-box 5 isoform b [Homo... 60 5e-09
gi|23308713 SRY (sex determining region Y)-box 5 isoform a [Homo... 60 5e-09
gi|224967054 SRY (sex determining region Y)-box 6 isoform 4 [Hom... 59 1e-08
gi|224967050 SRY (sex determining region Y)-box 6 isoform 3 [Hom... 59 1e-08
gi|70909338 SRY (sex determining region Y)-box 6 isoform 1 [Homo... 59 1e-08
gi|71037389 SRY (sex determining region Y)-box 6 isoform 2 [Homo... 59 1e-08
gi|5902106 SRY-box 15 [Homo sapiens] 57 3e-08
gi|28195386 sex-determining region Y-box 2 [Homo sapiens] 55 1e-07
gi|4557853 transcription factor SOX9 [Homo sapiens] 55 2e-07
gi|8924248 SRY-box 18 [Homo sapiens] 54 3e-07
gi|30179903 SRY (sex determining region Y)-box 8 [Homo sapiens] 54 3e-07
gi|217035121 HMG-BOX transcription factor BBX isoform 1 [Homo sa... 54 3e-07
gi|18378731 HMG-BOX transcription factor BBX isoform 2 [Homo sap... 54 3e-07
gi|4759162 SRY-box 14 [Homo sapiens] 52 1e-06
gi|5902112 SRY (sex determining region Y)-box 30 isoform b [Homo... 52 1e-06
gi|30581117 SRY (sex determining region Y)-box 30 isoform a [Hom... 52 1e-06
gi|5902104 SRY (sex determining region Y)-box 10 [Homo sapiens] 52 2e-06
gi|189491748 ataxin 1 [Homo sapiens] 51 2e-06
gi|51479158 ataxin 1 [Homo sapiens] 51 2e-06
gi|30179900 SRY (sex determining region Y)-box 1 [Homo sapiens] 51 2e-06
gi|30061556 SRY (sex determining region Y)-box 3 [Homo sapiens] 51 3e-06
gi|11967991 SRY-box 17 [Homo sapiens] 50 5e-06
gi|4507161 SRY-box 11 [Homo sapiens] 50 6e-06
gi|5902108 SRY-box 21 [Homo sapiens] 50 6e-06
gi|239741668 PREDICTED: upstream binding transcription factor, R... 47 4e-05
gi|169163306 PREDICTED: upstream binding transcription factor, R... 47 4e-05
>gi|21361411 HMG-box transcription factor 1 [Homo sapiens]
Length = 514
Score = 1077 bits (2786), Expect = 0.0
Identities = 514/514 (100%), Positives = 514/514 (100%)
Query: 1 MVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP 60
MVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP
Sbjct: 1 MVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP 60
Query: 61 ELQAVQSDPTQSGMYQLSSDVSHQEYPRSSWNQNTSDIPETTYRENEVDWLTELANIATS 120
ELQAVQSDPTQSGMYQLSSDVSHQEYPRSSWNQNTSDIPETTYRENEVDWLTELANIATS
Sbjct: 61 ELQAVQSDPTQSGMYQLSSDVSHQEYPRSSWNQNTSDIPETTYRENEVDWLTELANIATS 120
Query: 121 PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSEPAFPHHHWKEETPVRHER 180
PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSEPAFPHHHWKEETPVRHER
Sbjct: 121 PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSEPAFPHHHWKEETPVRHER 180
Query: 181 ANSESESGIFCMSSLSDDDDLGWCNSWPSTVWHCFLKGTRLCFHKGSNKEWQDVEDFARA 240
ANSESESGIFCMSSLSDDDDLGWCNSWPSTVWHCFLKGTRLCFHKGSNKEWQDVEDFARA
Sbjct: 181 ANSESESGIFCMSSLSDDDDLGWCNSWPSTVWHCFLKGTRLCFHKGSNKEWQDVEDFARA 240
Query: 241 EGCDNEEDLQMGIHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDH 300
EGCDNEEDLQMGIHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDH
Sbjct: 241 EGCDNEEDLQMGIHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDH 300
Query: 301 PFYVKNKGWSSFYPSLTVVQHGIPCCEVHIGDVCLPPGHPDAINFDDSGVFDTFKSYDFT 360
PFYVKNKGWSSFYPSLTVVQHGIPCCEVHIGDVCLPPGHPDAINFDDSGVFDTFKSYDFT
Sbjct: 301 PFYVKNKGWSSFYPSLTVVQHGIPCCEVHIGDVCLPPGHPDAINFDDSGVFDTFKSYDFT 360
Query: 361 PMDSSAVYVLSSMARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKN 420
PMDSSAVYVLSSMARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKN
Sbjct: 361 PMDSSAVYVLSSMARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKN 420
Query: 421 HSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEER 480
HSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEER
Sbjct: 421 HSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEER 480
Query: 481 RMYTLEAKALAEEQKRLNPDCWKRKRTNSGSQQH 514
RMYTLEAKALAEEQKRLNPDCWKRKRTNSGSQQH
Sbjct: 481 RMYTLEAKALAEEQKRLNPDCWKRKRTNSGSQQH 514
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 64.3 bits (155), Expect = 3e-10
Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 11/110 (10%)
Query: 410 SNSLYAKAVKNHSSGTVSATSPNK-----CKRPMNAFMLFAKKYRVEYTQMYPGKDNRAI 464
+ SL A + SS SPNK +RPMNAFM+F+K++R Q +P +DNR +
Sbjct: 171 TQSLSALPKERDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTV 230
Query: 465 SVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCWK-----RKRTNS 509
S ILG+ W + +E++ Y A + E + +PD WK RK+++S
Sbjct: 231 SKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPD-WKWCNKDRKKSSS 279
>gi|41406089 SRY-box 13 [Homo sapiens]
Length = 622
Score = 60.8 bits (146), Expect = 3e-09
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 435 KRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQ 494
KRPMNAFM++AK R + Q +P N +IS ILG RWK M N+E++ Y E L+ +
Sbjct: 425 KRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPYYEEQARLSRQH 484
Query: 495 KRLNPD 500
PD
Sbjct: 485 LEKYPD 490
>gi|30061558 SRY (sex determining region Y)-box 5 isoform c [Homo
sapiens]
Length = 377
Score = 60.1 bits (144), Expect = 5e-09
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 392 ARSGFSKNCGSPGSSQLSSNSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVE 451
A F+ + S GS+ +S + +Y ++ S+ P+ KRPMNAFM++AK R +
Sbjct: 135 AMMDFNLSGDSDGSAGVSESRIYRESRGRGSN------EPH-IKRPMNAFMVWAKDERRK 187
Query: 452 YTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPD 500
Q +P N IS ILG RWK M N E++ Y E L+++ PD
Sbjct: 188 ILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPD 236
>gi|23308715 SRY (sex determining region Y)-box 5 isoform b [Homo
sapiens]
Length = 750
Score = 60.1 bits (144), Expect = 5e-09
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 392 ARSGFSKNCGSPGSSQLSSNSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVE 451
A F+ + S GS+ +S + +Y ++ S+ P+ KRPMNAFM++AK R +
Sbjct: 508 AMMDFNLSGDSDGSAGVSESRIYRESRGRGSN------EPH-IKRPMNAFMVWAKDERRK 560
Query: 452 YTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPD 500
Q +P N IS ILG RWK M N E++ Y E L+++ PD
Sbjct: 561 ILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPD 609
>gi|23308713 SRY (sex determining region Y)-box 5 isoform a [Homo
sapiens]
Length = 763
Score = 60.1 bits (144), Expect = 5e-09
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 392 ARSGFSKNCGSPGSSQLSSNSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVE 451
A F+ + S GS+ +S + +Y ++ S+ P+ KRPMNAFM++AK R +
Sbjct: 521 AMMDFNLSGDSDGSAGVSESRIYRESRGRGSN------EPH-IKRPMNAFMVWAKDERRK 573
Query: 452 YTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPD 500
Q +P N IS ILG RWK M N E++ Y E L+++ PD
Sbjct: 574 ILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPD 622
>gi|224967054 SRY (sex determining region Y)-box 6 isoform 4 [Homo
sapiens]
Length = 841
Score = 58.9 bits (141), Expect = 1e-08
Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 428 ATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEA 487
A+S KRPMNAFM++AK R + Q +P N IS ILG RWK M N+E++ Y
Sbjct: 628 ASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPY---- 683
Query: 488 KALAEEQKRLN 498
EEQ RL+
Sbjct: 684 ---YEEQARLS 691
>gi|224967050 SRY (sex determining region Y)-box 6 isoform 3 [Homo
sapiens]
Length = 801
Score = 58.9 bits (141), Expect = 1e-08
Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 428 ATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEA 487
A+S KRPMNAFM++AK R + Q +P N IS ILG RWK M N+E++ Y
Sbjct: 588 ASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPY---- 643
Query: 488 KALAEEQKRLN 498
EEQ RL+
Sbjct: 644 ---YEEQARLS 651
>gi|70909338 SRY (sex determining region Y)-box 6 isoform 1 [Homo
sapiens]
Length = 804
Score = 58.9 bits (141), Expect = 1e-08
Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 428 ATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEA 487
A+S KRPMNAFM++AK R + Q +P N IS ILG RWK M N+E++ Y
Sbjct: 591 ASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPY---- 646
Query: 488 KALAEEQKRLN 498
EEQ RL+
Sbjct: 647 ---YEEQARLS 654
>gi|71037389 SRY (sex determining region Y)-box 6 isoform 2 [Homo
sapiens]
Length = 808
Score = 58.9 bits (141), Expect = 1e-08
Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 428 ATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEA 487
A+S KRPMNAFM++AK R + Q +P N IS ILG RWK M N+E++ Y
Sbjct: 595 ASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPY---- 650
Query: 488 KALAEEQKRLN 498
EEQ RL+
Sbjct: 651 ---YEEQARLS 658
>gi|5902106 SRY-box 15 [Homo sapiens]
Length = 233
Score = 57.4 bits (137), Expect = 3e-08
Identities = 46/123 (37%), Positives = 58/123 (47%), Gaps = 14/123 (11%)
Query: 403 PGSSQLSSNSLY---AKAVKNHSSGTVS---ATSP--------NKCKRPMNAFMLFAKKY 448
PGSSQ + SL A A + SSG A SP K KRPMNAFM+++
Sbjct: 4 PGSSQDQAWSLEPPAATAAASSSSGPQEREGAGSPAAPGTLPLEKVKRPMNAFMVWSSAQ 63
Query: 449 RVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCWKRKRTN 508
R + Q P N IS LG +WK + +E+R + EAK L R PD R R
Sbjct: 64 RRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRRK 123
Query: 509 SGS 511
+ S
Sbjct: 124 AKS 126
>gi|28195386 sex-determining region Y-box 2 [Homo sapiens]
Length = 317
Score = 55.5 bits (132), Expect = 1e-07
Identities = 39/108 (36%), Positives = 52/108 (48%), Gaps = 10/108 (9%)
Query: 403 PGSSQLSS----NSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPG 458
PG Q S NS A A N + SP++ KRPMNAFM++++ R + Q P
Sbjct: 12 PGPQQTSGGGGGNSTAAAAGGNQKN------SPDRVKRPMNAFMVWSRGQRRKMAQENPK 65
Query: 459 KDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCWKRKR 506
N IS LG WK + E+R + EAK L + +PD R R
Sbjct: 66 MHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPR 113
>gi|4557853 transcription factor SOX9 [Homo sapiens]
Length = 509
Score = 54.7 bits (130), Expect = 2e-07
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 426 VSATSPNK--CKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMY 483
V+ +S NK KRPMNAFM++A+ R + YP N +S LG W+ + E+R +
Sbjct: 95 VNGSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPF 154
Query: 484 TLEAKALAEEQKRLNPD 500
EA+ L + K+ +PD
Sbjct: 155 VEEAERLRVQHKKDHPD 171
>gi|8924248 SRY-box 18 [Homo sapiens]
Length = 384
Score = 54.3 bits (129), Expect = 3e-07
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 424 GTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMY 483
G A ++ +RPMNAFM++AK R Q P N +S +LG WK++ E+R +
Sbjct: 75 GERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNAAEKRPF 134
Query: 484 TLEAKALAEEQKRLNPDCWKRKR 506
EA+ L + R +P+ R R
Sbjct: 135 VEEAERLRVQHLRDHPNYKYRPR 157
>gi|30179903 SRY (sex determining region Y)-box 8 [Homo sapiens]
Length = 446
Score = 53.9 bits (128), Expect = 3e-07
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 412 SLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDR 471
SL V+ G + A KRPMNAFM++A+ R + YP N +S LG
Sbjct: 82 SLVPMPVRGGGGGALKAKP--HVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKL 139
Query: 472 WKKMKNEERRMYTLEAKALAEEQKRLNPDC-WKRKRTNSGSQQH 514
W+ + E+R + EA+ L + K+ +PD ++ +R S H
Sbjct: 140 WRLLSESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSAKAGH 183
>gi|217035121 HMG-BOX transcription factor BBX isoform 1 [Homo
sapiens]
Length = 941
Score = 53.9 bits (128), Expect = 3e-07
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 433 KCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAE 492
+ +RPMNAF+LF K++R Q +P DNR + IL D W + +E++ YT AK +
Sbjct: 79 RARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKD 138
Query: 493 EQKRLNP 499
+ NP
Sbjct: 139 AFMKANP 145
>gi|18378731 HMG-BOX transcription factor BBX isoform 2 [Homo
sapiens]
Length = 911
Score = 53.9 bits (128), Expect = 3e-07
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 433 KCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAE 492
+ +RPMNAF+LF K++R Q +P DNR + IL D W + +E++ YT AK +
Sbjct: 79 RARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKD 138
Query: 493 EQKRLNP 499
+ NP
Sbjct: 139 AFMKANP 145
>gi|4759162 SRY-box 14 [Homo sapiens]
Length = 240
Score = 52.4 bits (124), Expect = 1e-06
Identities = 29/72 (40%), Positives = 39/72 (54%)
Query: 435 KRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQ 494
KRPMNAFM++++ R + Q P N IS LG WK + E+R Y EAK L +
Sbjct: 9 KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQH 68
Query: 495 KRLNPDCWKRKR 506
+ +PD R R
Sbjct: 69 MKEHPDYKYRPR 80
>gi|5902112 SRY (sex determining region Y)-box 30 isoform b [Homo
sapiens]
Length = 501
Score = 52.0 bits (123), Expect = 1e-06
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 435 KRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQ 494
KRPMNAFM++A+ +R + P +N ISV LG W K+ E+++ Y EA+ + E+
Sbjct: 338 KRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEKH 397
Query: 495 KR------LNPDCWKRKR 506
+ P KRKR
Sbjct: 398 REEFPGWVYQPRPGKRKR 415
>gi|30581117 SRY (sex determining region Y)-box 30 isoform a [Homo
sapiens]
Length = 753
Score = 52.0 bits (123), Expect = 1e-06
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 435 KRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQ 494
KRPMNAFM++A+ +R + P +N ISV LG W K+ E+++ Y EA+ + E+
Sbjct: 338 KRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEKH 397
Query: 495 KR------LNPDCWKRKR 506
+ P KRKR
Sbjct: 398 REEFPGWVYQPRPGKRKR 415
>gi|5902104 SRY (sex determining region Y)-box 10 [Homo sapiens]
Length = 466
Score = 51.6 bits (122), Expect = 2e-06
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 435 KRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQ 494
KRPMNAFM++A+ R + YP N +S LG W+ + ++R + EA+ L +
Sbjct: 105 KRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRMQH 164
Query: 495 KRLNPD--CWKRKRTNSGSQQ 513
K+ +PD R+R N + Q
Sbjct: 165 KKDHPDYKYQPRRRKNGKAAQ 185
>gi|189491748 ataxin 1 [Homo sapiens]
Length = 815
Score = 51.2 bits (121), Expect = 2e-06
Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 15/130 (11%)
Query: 208 PSTVWHCFLKGTRLCFHKGSNKEWQDV--EDFARAEGCDNEEDLQMGIHKGYGSDGLKLL 265
P T+ F+KG+ + G K+ +D+ EDF ++ N DL++ D +
Sbjct: 567 PPTLPPYFMKGSIIQLANGELKKVEDLKTEDFIQSAEISN--DLKI--------DSSTVE 616
Query: 266 SHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDHPFYVKNKGWSSFYPSLTVVQHGIPC 325
E+S S G +V++ + ++VE +++PF+V +GWSS P T +PC
Sbjct: 617 RIEDSHSPGVAVIQFAVGEHRAQ---VSVEVLVEYPFFVFGQGWSSCCPERTSQLFDLPC 673
Query: 326 CEVHIGDVCL 335
++ +GDVC+
Sbjct: 674 SKLSVGDVCI 683
>gi|51479158 ataxin 1 [Homo sapiens]
Length = 815
Score = 51.2 bits (121), Expect = 2e-06
Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 15/130 (11%)
Query: 208 PSTVWHCFLKGTRLCFHKGSNKEWQDV--EDFARAEGCDNEEDLQMGIHKGYGSDGLKLL 265
P T+ F+KG+ + G K+ +D+ EDF ++ N DL++ D +
Sbjct: 567 PPTLPPYFMKGSIIQLANGELKKVEDLKTEDFIQSAEISN--DLKI--------DSSTVE 616
Query: 266 SHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDHPFYVKNKGWSSFYPSLTVVQHGIPC 325
E+S S G +V++ + ++VE +++PF+V +GWSS P T +PC
Sbjct: 617 RIEDSHSPGVAVIQFAVGEHRAQ---VSVEVLVEYPFFVFGQGWSSCCPERTSQLFDLPC 673
Query: 326 CEVHIGDVCL 335
++ +GDVC+
Sbjct: 674 SKLSVGDVCI 683
>gi|30179900 SRY (sex determining region Y)-box 1 [Homo sapiens]
Length = 391
Score = 51.2 bits (121), Expect = 2e-06
Identities = 30/83 (36%), Positives = 43/83 (51%)
Query: 424 GTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMY 483
G + + ++ KRPMNAFM++++ R + Q P N IS LG WK M E+R +
Sbjct: 41 GGGAKANQDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPF 100
Query: 484 TLEAKALAEEQKRLNPDCWKRKR 506
EAK L + +PD R R
Sbjct: 101 IDEAKRLRALHMKEHPDYKYRPR 123
>gi|30061556 SRY (sex determining region Y)-box 3 [Homo sapiens]
Length = 446
Score = 50.8 bits (120), Expect = 3e-06
Identities = 38/123 (30%), Positives = 52/123 (42%), Gaps = 9/123 (7%)
Query: 384 GGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKNHSSGTVSATSPNKCKRPMNAFML 443
GGP A + G S SS +SG T ++ KRPMNAFM+
Sbjct: 98 GGPAAPGGAGKSSANAAGGANSGGGSSGG---------ASGGGGGTDQDRVKRPMNAFMV 148
Query: 444 FAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCWK 503
+++ R + P N IS LG WK + + E+R + EAK L + PD
Sbjct: 149 WSRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFIDEAKRLRAVHMKEYPDYKY 208
Query: 504 RKR 506
R R
Sbjct: 209 RPR 211
>gi|11967991 SRY-box 17 [Homo sapiens]
Length = 414
Score = 50.1 bits (118), Expect = 5e-06
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 428 ATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEA 487
A ++ +RPMNAFM++AK R Q P N +S +LG WK + E+R + EA
Sbjct: 62 AKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEA 121
Query: 488 KALAEEQKRLNPDCWKRKR 506
+ L + + +P+ R R
Sbjct: 122 ERLRVQHMQDHPNYKYRPR 140
>gi|4507161 SRY-box 11 [Homo sapiens]
Length = 441
Score = 49.7 bits (117), Expect = 6e-06
Identities = 29/78 (37%), Positives = 41/78 (52%)
Query: 429 TSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAK 488
T+ KRPMNAFM+++K R + + P N IS LG RWK +K+ E+ + EA+
Sbjct: 44 TASGHIKRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAE 103
Query: 489 ALAEEQKRLNPDCWKRKR 506
L + PD R R
Sbjct: 104 RLRLKHMADYPDYKYRPR 121
>gi|5902108 SRY-box 21 [Homo sapiens]
Length = 276
Score = 49.7 bits (117), Expect = 6e-06
Identities = 28/72 (38%), Positives = 38/72 (52%)
Query: 435 KRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQ 494
KRPMNAFM++++ R + Q P N IS LG WK + E+R + EAK L
Sbjct: 9 KRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEAKRLRAMH 68
Query: 495 KRLNPDCWKRKR 506
+ +PD R R
Sbjct: 69 MKEHPDYKYRPR 80
>gi|239741668 PREDICTED: upstream binding transcription factor, RNA
polymerase I-like 3 [Homo sapiens]
Length = 457
Score = 47.0 bits (110), Expect = 4e-05
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 416 KAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKM 475
K VKN + P+ KRP+ A++ F K+ +Y+QMYPG ++ ++ IL ++K++
Sbjct: 146 KCVKNTNKSQKGRNHPDFPKRPLTAYIRFFKENWPQYSQMYPGMRSQELTKILSKKYKEL 205
Query: 476 KNEERRMY 483
+ ++ Y
Sbjct: 206 PEQMKQKY 213
>gi|169163306 PREDICTED: upstream binding transcription factor, RNA
polymerase I-like 5 [Homo sapiens]
Length = 471
Score = 47.0 bits (110), Expect = 4e-05
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 416 KAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKM 475
K VKN + P+ KRP+ A++ F K+ +Y+QMYPG ++ ++ IL ++K++
Sbjct: 160 KCVKNTNKSQKGRNHPDFPKRPLTAYIRFFKENWPQYSQMYPGMRSQELTKILSKKYKEL 219
Query: 476 KNEERRMY 483
+ ++ Y
Sbjct: 220 PEQMKQKY 227
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.129 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,649,337
Number of Sequences: 37866
Number of extensions: 1073093
Number of successful extensions: 2730
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 2596
Number of HSP's gapped (non-prelim): 157
length of query: 514
length of database: 18,247,518
effective HSP length: 107
effective length of query: 407
effective length of database: 14,195,856
effective search space: 5777713392
effective search space used: 5777713392
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.