Guide to the Human Genome
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Name: UBTFL3 Sequence: fasta or formatted (457aa) NCBI GI: 239741668
Description:

PREDICTED: upstream binding transcription factor, RNA polymerase I-like 3

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         19           2
 C cysteine            1.5          7           1
 D aspartate           5.0         23           2
 E glutamate           9.8         45           4
 F phenylalanine       3.3         15           2
 G glycine             4.8         22           2
 H histidine           3.3         15           2
 I isoleucine          3.5         16           1
 K lysine             12.0         55           2
 L leucine             7.7         35           2
 M methionine          3.7         17           2
 N asparagine          3.5         16           2
 P proline             4.4         20           2
 Q glutamine           7.2         33           1
 R arginine            4.6         21           2
 S serine              9.2         42           3
 T threonine           3.1         14           1
 V valine              4.4         20           1
 W tryptophan          2.2         10           1
 Y tyrosine            2.6         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: upstream binding transcription factor, R... 
UBTFL5                0.915   PREDICTED: upstream binding transcription factor, R...
UBTFL6                0.847   PREDICTED: upstream binding transcription factor, R...
UBTFL6                0.842   PREDICTED: upstream binding transcription factor, R...
UBTFL6                0.842   PREDICTED: upstream binding transcription factor, R...
UBTFL1                0.766   upstream binding transcription factor, RNA polymera...
UBTF                  0.294   upstream binding transcription factor, RNA polymera...
UBTF                  0.294   upstream binding transcription factor, RNA polymera...
UBTF                  0.264   upstream binding transcription factor, RNA polymerase...
TFAM                  0.051   transcription factor A, mitochondrial 
HMG20B                0.036   high-mobility group 20B 
HMG20A                0.033   high-mobility group 20A 
HMGB1                 0.031   high-mobility group box 1 
LOC729595             0.030   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.030   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.030   PREDICTED: similar to high mobility group box 3 iso...
TRIM53                0.030   tripartite motif-containing 53 
LOC642425             0.030   tripartite motif-containing 53-like 
LOC340970             0.030   PREDICTED: similar to tripartite motif-containing 5...
LOC340970             0.030   PREDICTED: similar to tripartite motif-containing 5...
LOC642425             0.030   PREDICTED: tripartite motif-containing 53-like [Hom...
LOC340970             0.030   PREDICTED: similar to tripartite motif-containing 5...
LOC441795             0.030   PREDICTED: high mobility group protein B3-like prot...
LOC441795             0.030   PREDICTED: high mobility group protein B3-like prot...
SMARCE1               0.030   SWI/SNF-related matrix-associated actin-dependent re...
LOC729595             0.027   PREDICTED: similar to high mobility group box 3 iso...
HMGB2                 0.027   high-mobility group box 2 
HMGB2                 0.027   high-mobility group box 2 
HMGB2                 0.027   high-mobility group box 2 
LOC283116             0.027   PREDICTED: similar to ring finger protein 18 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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