Guide to the Human Genome
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Name: SLC30A4 Sequence: fasta or formatted (429aa) NCBI GI: 21359890
Description:

solute carrier family 30 (zinc transporter), member 4

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         34           2
 C cysteine            1.6          7           1
 D aspartate           6.1         26           3
 E glutamate           4.2         18           2
 F phenylalanine       3.7         16           1
 G glycine             5.6         24           2
 H histidine           3.0         13           1
 I isoleucine          7.0         30           2
 K lysine              4.2         18           1
 L leucine            12.8         55           3
 M methionine          2.8         12           1
 N asparagine          4.0         17           1
 P proline             3.0         13           1
 Q glutamine           3.5         15           1
 R arginine            4.7         20           1
 S serine              9.6         41           3
 T threonine           4.9         21           2
 V valine              7.5         32           3
 W tryptophan          1.2          5           1
 Y tyrosine            2.8         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 30 (zinc transporter), member ... 
SLC30A2               0.306   solute carrier family 30, member 2 isoform 1 
SLC30A8               0.272   solute carrier family 30 member 8 
SLC30A3               0.260   solute carrier family 30 (zinc transporter), member ...
SLC30A2               0.209   solute carrier family 30, member 2 isoform 2 
SLC30A5               0.109   solute carrier family 30 (zinc transporter), member ...
SLC30A7               0.100   zinc transporter like 2 
SLC30A7               0.100   zinc transporter like 2 
SLC30A1               0.057   solute carrier family 30 (zinc transporter), member ...
SLC30A10              0.056   solute carrier family 30 (zinc transporter), member ...
LOC728528             0.041   PREDICTED: similar to hCG1985805 
LOC728528             0.041   PREDICTED: similar to hCG1985805 
LOC728528             0.041   PREDICTED: similar to hCG1985805 
SLC30A6               0.041   solute carrier family 30 (zinc transporter), member ...
CLSTN3                0.010   calsyntenin 3 
OR4F5                 0.010   olfactory receptor, family 4, subfamily F, member 5 ...
BECN1                 0.009   beclin 1 
SLC30A9               0.009   solute carrier family 30 (zinc transporter), member ...
OR4F4                 0.009   olfactory receptor, family 4, subfamily F, member 4 ...
OR4F17                0.009   olfactory receptor, family 4, subfamily F, member 17...
SLC22A2               0.009   solute carrier family 22 member 2 
LOC100289996          0.007   PREDICTED: hypothetical protein XP_002347212 
LOC100287396          0.007   PREDICTED: hypothetical protein XP_002343076 
ATP7A                 0.007   ATPase, Cu++ transporting, alpha polypeptide 
LARS                  0.006   leucyl-tRNA synthetase 
EPB41L2               0.006   erythrocyte membrane protein band 4.1-like 2 isofor...
EPB41L2               0.006   erythrocyte membrane protein band 4.1-like 2 isofor...
EPB41L2               0.006   erythrocyte membrane protein band 4.1-like 2 isoform ...
SLC39A10              0.006   solute carrier family 39 (zinc transporter), member...
SLC39A10              0.006   solute carrier family 39 (zinc transporter), member ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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