Guide to the Human Genome
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Name: LOC728528 Sequence: fasta or formatted (214aa) NCBI GI: 169162025
Description:

PREDICTED: similar to hCG1985805

Not currently referenced in the text

Other entries for this name:
alt mRNA {214aa} PREDICTED: similar to hCG1985805
alt mRNA {214aa} PREDICTED: similar to hCG1985805
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         16           2
 C cysteine            2.3          5           2
 D aspartate           2.3          5           1
 E glutamate           3.7          8           2
 F phenylalanine       7.5         16           2
 G glycine             8.4         18           1
 H histidine           1.4          3           1
 I isoleucine          8.4         18           2
 K lysine              6.5         14           2
 L leucine             9.8         21           2
 M methionine          3.3          7           1
 N asparagine          4.2          9           1
 P proline             4.7         10           1
 Q glutamine           2.3          5           1
 R arginine            4.2          9           1
 S serine              9.3         20           1
 T threonine           2.8          6           1
 V valine              7.9         17           2
 W tryptophan          0.5          1           1
 Y tyrosine            2.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1985805 
LOC728528             1.000   PREDICTED: similar to hCG1985805 
LOC728528             1.000   PREDICTED: similar to hCG1985805 
SLC30A10              0.247   solute carrier family 30 (zinc transporter), member ...
SLC30A1               0.185   solute carrier family 30 (zinc transporter), member ...
SLC30A4               0.085   solute carrier family 30 (zinc transporter), member ...
SLC30A5               0.085   solute carrier family 30 (zinc transporter), member ...
SLC30A7               0.065   zinc transporter like 2 
SLC30A7               0.065   zinc transporter like 2 
SLC30A2               0.055   solute carrier family 30, member 2 isoform 1 
SLC30A8               0.048   solute carrier family 30 member 8 
SLC30A3               0.035   solute carrier family 30 (zinc transporter), member ...
ANKZF1                0.018   ankyrin repeat and zinc finger domain containing 1 ...
ANKZF1                0.018   ankyrin repeat and zinc finger domain containing 1 ...
SHISA3                0.010   shisa homolog 3 
OTOL1                 0.010   hypothetical protein LOC131149 
COL4A5                0.007   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.007   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.007   type IV collagen alpha 5 isoform 3 precursor 
COL27A1               0.007   collagen, type XXVII, alpha 1 
SLC36A3               0.007   solute carrier family 36, member 3 isoform 1 
SLC36A3               0.007   solute carrier family 36, member 3 isoform 2 
ANO7                  0.005   transmembrane protein 16G isoform NGEP long 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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