Guide to the Human Genome
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Name: SLC30A2 Sequence: fasta or formatted (323aa) NCBI GI: 14210520
Description:

solute carrier family 30, member 2 isoform 2

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [372aa] solute carrier family 30, member 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         29           2
 C cysteine            2.2          7           1
 D aspartate           5.0         16           1
 E glutamate           5.0         16           2
 F phenylalanine       2.8          9           1
 G glycine             7.7         25           2
 H histidine           4.6         15           2
 I isoleucine          7.4         24           2
 K lysine              3.7         12           2
 L leucine            11.1         36           3
 M methionine          2.5          8           1
 N asparagine          1.5          5           1
 P proline             3.7         12           1
 Q glutamine           5.6         18           2
 R arginine            2.8          9           1
 S serine              6.5         21           2
 T threonine           5.6         18           2
 V valine              9.3         30           2
 W tryptophan          1.2          4           1
 Y tyrosine            2.8          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 30, member 2 isoform 2 
SLC30A2               0.963   solute carrier family 30, member 2 isoform 1 
SLC30A3               0.399   solute carrier family 30 (zinc transporter), member ...
SLC30A8               0.381   solute carrier family 30 member 8 
SLC30A4               0.275   solute carrier family 30 (zinc transporter), member ...
SLC30A10              0.095   solute carrier family 30 (zinc transporter), member ...
SLC30A1               0.071   solute carrier family 30 (zinc transporter), member ...
SLC30A7               0.066   zinc transporter like 2 
SLC30A7               0.066   zinc transporter like 2 
SLC30A5               0.063   solute carrier family 30 (zinc transporter), member ...
SLC30A6               0.019   solute carrier family 30 (zinc transporter), member ...
OR52E2                0.010   olfactory receptor, family 52, subfamily E, member 2...
SLC39A7               0.008   solute carrier family 39, member 7 
SLC39A7               0.008   solute carrier family 39, member 7 
ORM1                  0.008   orosomucoid 1 precursor 
ORM2                  0.008   orosomucoid 2 
SLC29A1               0.006   equilibrative nucleoside transporter 1 
SLC29A1               0.006   equilibrative nucleoside transporter 1 
SLC29A1               0.006   equilibrative nucleoside transporter 1 
SLC29A1               0.006   equilibrative nucleoside transporter 1 
SLC29A1               0.006   equilibrative nucleoside transporter 1 
VKORC1L1              0.006   vitamin K epoxide reductase complex, subunit 1-like ...
MTNR1A                0.005   melatonin receptor 1A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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