Guide to the Human Genome
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Name: SLC30A2 Sequence: fasta or formatted (372aa) NCBI GI: 52352805
Description:

solute carrier family 30, member 2 isoform 1

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [323aa] solute carrier family 30, member 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         36           2
 C cysteine            1.9          7           1
 D aspartate           4.8         18           1
 E glutamate           4.3         16           2
 F phenylalanine       3.2         12           1
 G glycine             7.5         28           2
 H histidine           4.6         17           2
 I isoleucine          6.7         25           2
 K lysine              3.5         13           2
 L leucine            11.6         43           3
 M methionine          3.2         12           1
 N asparagine          1.6          6           1
 P proline             3.5         13           1
 Q glutamine           5.1         19           2
 R arginine            3.0         11           1
 S serine              7.3         27           2
 T threonine           5.9         22           2
 V valine              8.3         31           2
 W tryptophan          1.6          6           1
 Y tyrosine            2.7         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 30, member 2 isoform 1 
SLC30A2               0.832   solute carrier family 30, member 2 isoform 2 
SLC30A3               0.486   solute carrier family 30 (zinc transporter), member ...
SLC30A8               0.456   solute carrier family 30 member 8 
SLC30A4               0.349   solute carrier family 30 (zinc transporter), member ...
SLC30A5               0.106   solute carrier family 30 (zinc transporter), member ...
SLC30A10              0.082   solute carrier family 30 (zinc transporter), member ...
SLC30A7               0.081   zinc transporter like 2 
SLC30A7               0.081   zinc transporter like 2 
SLC30A1               0.071   solute carrier family 30 (zinc transporter), member ...
SLC30A6               0.046   solute carrier family 30 (zinc transporter), member ...
LOC728528             0.031   PREDICTED: similar to hCG1985805 
LOC728528             0.031   PREDICTED: similar to hCG1985805 
LOC728528             0.031   PREDICTED: similar to hCG1985805 
OR52E2                0.008   olfactory receptor, family 52, subfamily E, member 2...
SLC39A7               0.007   solute carrier family 39, member 7 
SLC39A7               0.007   solute carrier family 39, member 7 
ORM1                  0.007   orosomucoid 1 precursor 
ORM2                  0.007   orosomucoid 2 
AVPR1B                0.006   arginine vasopressin receptor 1B 
VKORC1L1              0.006   vitamin K epoxide reductase complex, subunit 1-like ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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