Guide to the Human Genome
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Name: BECN1 Sequence: fasta or formatted (450aa) NCBI GI: 4502395
Description:

beclin 1

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death
Additional Membrane Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         21           2
 C cysteine            2.0          9           1
 D aspartate           5.3         24           2
 E glutamate          11.3         51           3
 F phenylalanine       4.7         21           2
 G glycine             5.3         24           2
 H histidine           1.3          6           1
 I isoleucine          3.1         14           1
 K lysine              6.4         29           2
 L leucine            10.9         49           3
 M methionine          2.9         13           2
 N asparagine          5.3         24           2
 P proline             2.9         13           2
 Q glutamine           7.1         32           2
 R arginine            4.9         22           2
 S serine              6.4         29           2
 T threonine           6.7         30           2
 V valine              4.7         21           1
 W tryptophan          1.6          7           1
 Y tyrosine            2.4         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   beclin 1 
BECN1L1               0.496   PREDICTED: Beclin-1-like protein 1 
BECN1L1               0.496   PREDICTED: Beclin-1-like protein 1 
BECN1L1               0.495   PREDICTED: Beclin-1-like protein 1 
CCDC88A               0.029   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.029   coiled-coil domain containing 88A isoform 1 
LOC400352             0.027   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.027   PREDICTED: similar to Putative golgin subfamily A m...
HMMR                  0.027   hyaluronan-mediated motility receptor isoform d [Ho...
HMMR                  0.027   hyaluronan-mediated motility receptor isoform a [Ho...
HMMR                  0.027   hyaluronan-mediated motility receptor isoform c [Ho...
HMMR                  0.027   hyaluronan-mediated motility receptor isoform b [Ho...
TCHH                  0.026   trichohyalin 
TPM4                  0.026   tropomyosin 4 isoform 1 
TPM4                  0.026   tropomyosin 4 isoform 2 
C14orf145             0.026   hypothetical protein LOC145508 
TPM1                  0.025   tropomyosin 1 alpha chain isoform 6 
TPM1                  0.025   tropomyosin 1 alpha chain isoform 2 
TPM1                  0.025   tropomyosin 1 alpha chain isoform 1 
TPM1                  0.025   tropomyosin 1 alpha chain isoform 3 
DEF6                  0.025   differentially expressed in FDCP 6 homolog 
LOC100133758          0.025   PREDICTED: hypothetical protein, partial 
SMC6                  0.025   SMC6 protein 
SMC6                  0.025   SMC6 protein 
DNAH9                 0.025   dynein, axonemal, heavy chain 9 isoform 2 
ROCK2                 0.025   Rho-associated, coiled-coil containing protein kinas...
TPM3                  0.025   tropomyosin 3 isoform 5 
TPM3                  0.025   tropomyosin 3 isoform 4 
TPM3                  0.025   tropomyosin 3 isoform 1 
TPM2                  0.025   tropomyosin 2 (beta) isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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