Guide to the Human Genome
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Name: LOC100289996 Sequence: fasta or formatted (391aa) NCBI GI: 239749916
Description:

PREDICTED: hypothetical protein XP_002347212

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8         15           1
 C cysteine            1.0          4           1
 D aspartate           1.3          5           1
 E glutamate           0.0          0           0
 F phenylalanine       1.5          6           1
 G glycine             1.5          6           1
 H histidine           0.8          3           1
 I isoleucine         14.8         58           2
 K lysine              0.5          2           1
 L leucine            14.1         55           2
 M methionine          1.8          7           1
 N asparagine          1.0          4           1
 P proline             5.4         21           3
 Q glutamine           0.5          2           1
 R arginine            0.3          1           1
 S serine             11.8         46           2
 T threonine          12.3         48           2
 V valine             26.9        105           3
 W tryptophan          0.5          2           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347212 
LOC100287396          0.989   PREDICTED: hypothetical protein XP_002343076 
LOC100293520          0.116   PREDICTED: hypothetical protein 
LOC100287207          0.116   PREDICTED: hypothetical protein XP_002342660 
LOC100294237          0.116   PREDICTED: hypothetical protein 
LOC100294174          0.116   PREDICTED: hypothetical protein 
LOC100294124          0.116   PREDICTED: hypothetical protein 
LOC100294292          0.104   PREDICTED: hypothetical protein XP_002344066 
LOC100291351          0.102   PREDICTED: hypothetical protein XP_002347312 
LOC388849             0.098   PREDICTED: similar to hCG1732289 
LOC730474             0.051   PREDICTED: hypothetical protein, partial 
LOC730474             0.035   PREDICTED: hypothetical protein 
ABCA5                 0.029   ATP-binding cassette, sub-family A , member 5 
ABCA5                 0.029   ATP-binding cassette, sub-family A , member 5 
LOC100131552          0.027   PREDICTED: hypothetical protein 
LOC100131552          0.027   PREDICTED: hypothetical protein 
LOC100131552          0.027   PREDICTED: hypothetical protein 
LOC100294470          0.024   PREDICTED: hypothetical protein, partial 
OR4K2                 0.024   olfactory receptor, family 4, subfamily K, member 2 ...
GPR115                0.023   G-protein coupled receptor 115 
LOC388849             0.020   PREDICTED: similar to hCG1732289 
OR10J5                0.018   olfactory receptor, family 10, subfamily J, member 5...
OPRK1                 0.018   opioid receptor, kappa 1 
HAVCR1                0.017   hepatitis A virus cellular receptor 1 
HAVCR1                0.017   hepatitis A virus cellular receptor 1 
ABCA6                 0.017   ATP-binding cassette, sub-family A, member 6 
IFI27                 0.017   interferon, alpha-inducible protein 27 isoform 2 [Ho...
ATP6                  0.017   ATP synthase F0 subunit 6 
MUC16                 0.017   mucin 16 
LOC100292299          0.017   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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